Spreading of pruning waste over the soil surface may increase soil organic carbon, thus improving soil physical properties and serving as a source of nutrients and energy for microbial populations. The aim of this study was to test the effect of the environmental conditions and the biochemical composition of pruning waste from avocado, cherimoya, mango and gardens on their decomposition process in a Mediterranean subtropical climate. Bagged pruning and garden waste were placed on the ground at a distance of 1 m around the trunk of the three trees from each crop. The concentrations in C, N, lignin, cellulose, hemicellulose, other extracts and ash were determined at the beginning of the experiment (T0), after six (T6) and 24 (T24) months in the field. Initially, significant differences were detected for all types of waste, especially in lignin, hemicellulose, cellulose and other extracts. No significant differences were found in the N content and the C content in mango pruning waste was significantly lower than that in avocado. The greatest weight loss recorded at T24 (63.2%) was related to the lower content in lignin, cellulose and other extracts. Weight losses and C concentrations showed negative correlations with lignin content. Despite the intense decomposition of all the waste, between 55 and 36.8% of the original weights were recorded at the end of the experiment. Recalcitrant C could be the result of the lignin concentrating in the case of the garden waste applied to the different crops.

Common vetch (Vicia sativa) is an important forage and green manure crop that is widely cultivated around the world. However, the large number of subspecies and accessions of common vetch has made taxonomic research on this species difficult. Pollen morphology data can provide important evidence in the study of plant phylogeny. Therefore, in this research, light microscopy and scanning electron microscopy were used to observe seven morphological traits of pollens from 22 common vetch accessions, and residual maximum likelihood and pattern analysis was conducted. The results showed that the pollen grains of the 22 accessions were all monad pollen and the polar view revealed three-lobed circular and triangular shapes, while the equatorial view mainly revealed an oblate shape; only one accession showed an oblate spherical shape. All accessions were 3-zonocolporate and the colpus length extended close to the poles. The polar axis length was (19.39 ± 0.97)–(42.12 ± 0.76) μm and the equatorial axis length was (35.97 ± 1.27)–(45.25 ± 0.81) μm. We found that qualitative traits of pollen shape, aperture polar view and ornamentation were highly stable. Among them, polar axis length, equatorial axis length and colpus length and width had significant differences among the accessions. The ratios of the equatorial and polar axes had significant differences among the subspecies. This trait information could be used for the classification and identification of common vetch accessions and subspecies.

One of the major challenges in agriculture is how climate change influences crop production, for different environmental (soil type, topography, groundwater depth, etc.) and agronomic management conditions. Through systems modelling, this study aims to quantify the impact of future climate on yield risk of winter wheat for two common soil types of Eastern Denmark. The agro-ecosystem model DAISY was used to simulate arable, conventional cropping systems (CSs) and the study focused on the three main management factors: cropping sequence, usage of catch crops and cereal straw management. For the case region of Eastern Denmark, the future yield risk of wheat does not necessarily increase under climate change mainly due to lower water stress in the projections; rather, it depends on appropriate management and each CS design. Major management factors affecting the yield risk of wheat were N supply and the amount of organic material added during rotations. If a CS is characterized by straw removal and no catch crop within the rotation, an increased wheat yield risk must be expected in the future. In contrast, more favourable CSs, including catch crops and straw incorporation, maintain their capacity and result in a decreasing yield risk over time. Higher soil organic matter content, higher net nitrogen mineralization rate and higher soil organic nitrogen content were the main underlying causes for these positive effects. Furthermore, the simulation results showed better N recycling and reduced nitrate leaching for the more favourable CSs, which provide benefits for environment-friendly and sustainable crop production.

The characteristic traits of maize (Zea mays L.) leaves affect light interception and photosynthesis. Measurement or estimation of individual leaf area has been described using discontinuous equations or bell-shaped functions. However, new maize hybrids show different canopy architecture, such as leaf angle in modern maize which is more upright and ear leaf and adjacent leaves which are longer than older hybrids. The original equations and their parameters, which have been used for older maize hybrids and grown at low plant densities, will not accurately represent modern hybrids. Therefore, the aim of this paper was to develop a new empirical equation that captures vertical leaf distribution. To characterize the vertical leaf profile, we conducted a field experiment in Jilin province, Northeast China from 2015 to 2018. Our new equation for the vertical distribution of leaf profile describes leaf length, width or leaf area as a function of leaf rank, using parameters for the maximum value for leaf length, width or area, the leaf rank at which the maximum value is obtained, and the width of the curve. It thus involves one parameter less than the previously used equations. By analysing the characteristics of this new equation, we identified four key leaf ranks (4, 8, 14 and 20) for which leaf parameter values need to be quantified in order to have a good estimation of leaf length, width and area. Together, the method of leaf area estimation proposed here adds versatility for use in modern maize hybrids and simplifies the field measurements by using the four key leaf ranks to estimate vertical leaf distribution in maize canopy instead of all leaf ranks.

Shaded coffee systems can mitigate climate change by fixation of atmospheric carbon dioxide (CO2) in soil. Understanding soil organic carbon (SOC) storage and the factors influencing SOC in coffee plantations are necessary for the development of sound land management practices to prevent land degradation and minimize SOC losses. This study was conducted in the main coffee-growing regions of Yunnan; SOC concentrations and storage of shaded and unshaded coffee systems were assessed in the top 40 cm of soil. Relationships between SOC concentration and factors affecting SOC were analysed using multiple linear regression based on the forward and backward stepwise regression method. Factors analysed were soil bulk density (ρb), soil pH, total nitrogen of soil (N), mean annual temperature (MAT), mean annual moisture (MAM), mean annual precipitation (MAP) and elevations (E). Akaike's information criterion (AIC), coefficient of determination (R2), root mean square error (RMSE) and residual sum of squares (RSS) were used to describe the accuracy of multiple linear regression models. Results showed that mean SOC concentration and storage decreased significantly with depth under unshaded coffee systems. Mean SOC concentration and storage were higher in shaded than unshaded coffee systems at 20–40 cm depth. The correlations between SOC concentration and ρb, pH and N were significant. Evidence from the multiple linear regression model showed that soil bulk density (ρb), soil pH, total nitrogen of soil (N) and climatic variables had the greatest impact on soil carbon storage in the coffee system.

Oat (Avena spp. L.) intercropped with common vetch (Vicia sativa L.) has shown high forage yield and crude protein content (CP) in rainfed Mediterranean environments of Greece. The objective was to study the oat genotypic interactions for yield, quality and agronomic traits of four oat accessions (cv. Flega and lines B2, B3 and B4) grown as intercrops with a common vetch cultivar (Pegasus) and as monocrops without or with nitrogen (N) supplementation (100 kg N/ha). In all mixtures, the land equivalent ratio exceeded the unit indicating that there was a yield advantage. Intercrops produced, on average, 5.0% less dry matter (DM) and 38.9% more crude protein yield (CPY) compared to monocropped oats with N fertilization and 3.4% more DM and 75.5% more CPY compared to monocropped oats without N fertilization. The DM, CP and quality differences between the intercropped and monocropped oats were attributed to oats by vetch cultivar interactions. The oat B2 intercropped was the shortest, the latest flowering and the less vigorous early in the season, a trait that allowed common vetch to dominate in the intercrop (vetch participation 770 g/kg). The high vetch fragment in the intercrop contributed to high CP, CPY, acid detergent lignin, total digestible nutrients, relative feeding value, relative forage quality, net energy for lactation and to low neutral detergent fibre, acid detergent fibre and hemicellulose. The replacement value index indicated that the intercrop was 21% more economically viable in comparison to the fertilized monocrop.

The plant availability of manure nitrogen (N) is influenced by manure composition in the year of application whereas some studies indicate that the legacy effect in following years is independent of the composition. The plant availability of N in pig and cattle slurries with variable contents of particulate matter was determined in a 3-year field study. We separated cattle and a pig slurry into liquid and solid fractions by centrifugation. Slurry mixtures with varying proportions of solid and liquid fraction were applied to a loamy sand soil at similar NH4+-N rates in the first year. Yields and N offtake of spring barley and undersown perennial ryegrass were compared to plots receiving mineral N fertilizer. The first year N fertilizer replacement value (NFRV) of total N in slurry mixtures decreased with increasing proportion of solid fraction. The second and third season NFRV averaged 6.5% and 3.8% of total N, respectively, for cattle slurries, and 18% and 7.5% for pig slurries and was not related to the proportion of solid fraction. The estimated net N mineralization of residual organic N increased nearly linearly with growing degree days (GDD) with a rate of 0.0058%/GDD for cattle and 0.0116%/GDD for pig slurries at 2000–5000 GDD after application. In conclusion NFRV of slurry decreased with increasing proportion of solid fraction in the first year. In the second year, NFRV of pig slurry N was significantly higher than that of cattle slurry N and unaffected by proportion between solid and liquid fraction.

The Global Yield Gap Atlas (GYGA) is an international project that addresses global food production capacity in the form of yield gaps (Yg). The GYGA project is unique in employing its original Climate Zonation Scheme (CZS) composed of three indexed factors, i.e. Growing Degree Days (GDD) related to temperature, Aridity Index (AI) related to available water and Temperature Seasonality (TS) related to annual temperature range, creating 300 Climate Zones (CZs) theoretically across the globe. In the present study, the GYGA CZs were identified for Japan on a municipality basis and analysis of variance (ANOVA) was performed on irrigated rice yield data sets, equating to actual yields (Ya) in the GYGA context, from long-term government statistics. The ANOVA was conducted for the data sets over two decades between 1994 and 2016 by assigning the GDD score of 6 levels and the TS score of 2 levels as fixed factors. Significant interactions with respect to Ya were observed between GDD score and TS score for 13 years out of 21 years implying the existence of favourable combinations of the GDD score and the TS score for rice cultivation. The implication was also supported by the observation with Yg. The lower values of coefficient of variance obtained from the CZs characterized by medium GDD scores indicated the stability over time of rice yields in these areas. These findings suggest a possibility that the GYGA-CZS can be recognized as a tool suitable to identify favourable CZs for growing crops.

Soil organic matter (SOM) and its fractions play an important role in maintaining or improving soil quality and soil fertility. Therefore, the effects of a 34-year long-term fertilizer regime on six functional SOM fractions under a double-cropping rice paddy field of southern China were studied in the current paper. The field experiment included four different fertilizer treatments: chemical fertilizer alone (MF), rice straw residue and chemical fertilizer (RF), 30% organic manure and 70% chemical fertilizer (OM) and without fertilizer input as control (CK). The results showed that coarse unprotected particulate organic matter (cPOM), biochemically, physically–biochemically and chemically protected silt-sized fractions (NH-dSilt, NH-μSilt and H-dSilt) were the main carbon (C) storage fractions under long-term fertilization conditions, accounting for 16.7–26.5, 31.1–35.6, 16.2–17.3 and 7.5–8.2% of the total soil organic carbon (SOC) content in paddy soil, respectively. Compared with control, OM treatment increased the SOC content in the cPOM, fine unprotected POM fraction, pure physically protected fraction and physico-chemically protected fractions by 58.9, 106.7, 117.6 and 28.3%, respectively. The largest proportion of SOC to total SOC in the different fractions was biochemically protected, followed by chemically and unprotected, and physically protected were the smallest. These results suggested that a physical protection mechanism plays an important role in stabilizing C of paddy soil. In summary, the results showed that higher functional SOM fractions and physical protection mechanism play an important role in SOM cycling in terms of C sequestration under the double-cropping rice paddy field.

Soybean is one of the key oil crops in global food security. The objective of the current study was to determine the magnitude of soybean yield and yield gaps (Yg) in the main producing regions in Iran, the main causes and possible solutions to reduce these gaps and improve yields. This study uses an integrated approach of crop simulation and on-farm information. The SSM-iCrop2 model was used to calculate the potential yield (Yp). Furthermore, management information of soybean farms (the number of monitored farms was 224) was collected and analysed with two methods, including stepwise regression (a production model was created and based on it, the yield-limiting factors were determined) and boundary line analysis (show the optimum level of crop management and simultaneously the percentage of farms that were out of the optimal range of a specific management procedure). The results showed a Yp of 4681 kg/ha while actual yield (Ya) was around 2257 kg/ha. The main factors causing Yg of soybean in Iran were irrigation, nitrogen fertilizer, phosphorus fertilizer and sowing date. Altering soybean sowing date to late June or early July, irrigating at least five times during the growing season, applying at least 50 kg/ha nitrogen and 45 kg/ha phosphorus base application are foremost management practices that could shrink the soybean yield gap in Iran. The results presented in this study can bring relevant transferable information to other soybean production areas sharing the same latitudes and climate, and the approach can be used for other crops worldwide.

The effects of different barley grain preservation techniques on intake, growth and carcase traits of dairy bulls were determined in a feeding trial using 52 Holstein and 48 Nordic Red bulls which were allotted to four feeding treatments (five pens and 25 bulls per treatment). Spring barley was harvested with a conventional combine harvester and four different preservation techniques formed the four experimental treatments. Dry grain (DG) was dried to the targeted dry matter (DM) concentration of 870–880 g/kg and rolled within 7 days prior to feeding. High moisture grain treated with a formic acid-based additive (FA) was harvested and crimped on the targeted DM content of 700 g/kg. Low moisture grain treated with a urea-based additive (UR) and low moisture grain treated with a propionic acid-based additive (PA) were harvested and crimped on the targeted DM content of 800 g/kg. The bulls were fed with total mixed ration ad libitum. On DM basis, the diets included grass silage (500 g/kg), barley grain (485 g/kg) and a mineral–vitamin mixture (15 g/kg). Daily DM intake (DMI) and live weight gain were 6% higher when crimped grains were used instead of DG (P < 0.05). There were no observed significant differences in DMI, gain or carcase traits between high moisture and low moisture crimped grain treatments or between UR and PA. The current results show that producers have the option to vary grain preservation system without major changes to growth performance or carcase traits.

This study aimed to (1) evaluate the effects of flint maize processing methods on the estimation of the readily soluble fraction (a), the potentially degradable fraction (b) and the rate of degradation of b (c) for dry matter (DM), organic matter (OM) and starch in the rumen; and (2) verify whether two different applications of in situ technique can be used to estimate in vivo DM, OM and starch digestibilities. Five ruminally cannulated Nellore bulls (265 ± 18.2 kg; 8 ± 1.0 mo) were distributed in a 5 × 5 Latin square. Three experimental diets were composed of 0.30 whole-plant maize silage, 0.10 supplement and 0.60 of one of the following processing methods: dry ground maize grain (DMG); high-moisture maize (HMM); reconstituted maize grain silage (RMG). Two additional diets were composed of 0.10 supplement, 0.80 snaplage and 0.10 stalklage (SNAP-80); or 0.10 supplement and 0.90 snaplage (SNAP-90). Digestibilities were estimated using in vivo procedure or predicted from in situ technique using a single 24 h incubation point or an equation proposed in previous literature. Diets based on ensiled grains presented greater (P < 0.05) fraction a and c and lower (P < 0.05) fraction b of DM, OM and starch compared to DMG. Both alternative use of in situ technique accurately estimated (P > 0.05) in vivo DM, OM and starch digestibilities. The results suggest that ensilage process may increase the availability of nutrients. The two different applications of in situ technique showed precision and accuracy to estimate in vivo digestibility.

This study investigated whether the interaction of protein level and grain type can affect milk production, nutrient digestibility and rumen fermentation in primiparous Holstein cows. Four dietary treatments were used: high-protein with barley as the only grain source, HP-B; (2) high-protein with an equal mix of barley and maize, HP-BM; (3) low-protein with barley as the only grain source, LP-B and (4) low-protein with equal proportions of barley and maize, LP-BM. High-protein diets showed no improvement in milk or protein yield compared with low-protein, but barley and maize mix diets increased energy-corrected milk yield and fat yield compared with barley-only diets. The highest total apparent digestibility of dry matter, organic matter and neutral detergent fibre was observed for LP-BM whereas HP-BM showed the greatest crude protein digestibility. Treatment had no effect on total volatile fatty acid concentrations, molar proportion of acetate and propionate and acetate to propionate ratio. The lowest ruminal pH was observed for LP-B. High-protein diets resulted in greater concentrations of ammonia nitrogen (N), urinary N, blood and milk urea nitrogen compared with low-protein diets, whereas low-protein diets showed better nitrogen utilization efficiency. This study showed that primiparous lactating cows do not benefit from high-protein diets with different fermentation rates of grain sources, but barley and maize diets may improve milk production performance, ruminal fermentation and pH under the present dietary conditions. The current results on milk production performance should be interpreted with caution due to the small number of cows used (eight in each treatment).

The current study investigated associations between variation in the bovine perilipin-2 gene (PLIN2) and milk traits (milk fat content, milk protein content, milk yield and milk fatty acid (FA) component levels) in 409 New Zealand pasture-grazed Holstein-Friesian × Jersey-cross (HF × J-cross or Kiwicross™) cows. Five nucleotide sequence variants were found in three regions of the gene, including c.17C>T in exon 2, c.53A>G in exon 3, c.595+23G>A and c.595+104_595+108del in intron 5, and c.*302T>C in the 3′-untranslated region. The c.*302T>C substitution produces two nucleotide sequence variants (A5 and B5), and this variation was associated with variation in milk protein content and milkfat composition for C10:0, C11:0, C12:0, C13:0 and C16:0 FA and medium-chain fatty acid (MCFA) and long-chain fatty acid (LCFA) groups. After correcting for the effect of variation in the diacylglycerol acyl-CoA acyltransferase 1 gene (DGAT1) that results in the amino acid substitution p.K232A, variation in the FA binding protein 4 gene (FABP4) and variation in the stearoyl-CoA desaturase (Δ-9-desaturase) gene (SCD) that results in the amino acids substitution p.A293V, significant differences between A5A5 and B5B5 cows were found for C10:0, C11:0, C12:0, C13:0, C16:0, and the MCFA, LCFA, total saturated FA and C10:1 index groups. This suggests that nucleotide sequence variation in PLIN2 may be affecting milk FA component levels.

The current study assessed ruminal fermentation parameters and bacterial community, nutrient intake, nutrient digestibility and nitrogen balance of goats fed diets containing buffel grass hay and ruminal ammonia nitrogen (N-NH3). Five rumen-cannulated mixed-breed castrated adult goats (45 ± 2.3 kg) were used in a 5 × 5 Latin square design represented by five N-NH3 levels (3.43, 9.95, 17.2, 23.0 and 33.7 mg/dl). Control animals were fed hay exclusively. Other treatments were represented by ruminal infusion composed of a mixture containing urea, ammonium sulphate and casein. The increasing N-NH3 concentrations did not affect rumen fluid pH, which averaged 6.43. Rumen ammoniacal nitrogen increased linearly in response to N-NH3. Volatile fatty acids were not affected by increasing N-NH3 concentrations. A higher abundance of Ruminococcaceae (Ruminococcus 1, Ruminococcaceae UCG-014 and Ruminococcaceae NK4A214 group) was observed in the rumen of goats infused with higher concentrations of N-NH3 (17.2 and 33.7 mg/dl N-NH3). There was a quadratic effect (P < 0.050) of N-NH3 levels on neutral detergent fibre intake with maximum values estimated at 13.7 mg/dl N-NH3. Nutrient intake, nitrogen excretion and nitrogen balance presented a positive linear effect (P < 0.050). In conclusion, 3.43 mg/dl of N-NH3 is the minimum level to maintain microbial activity, whereas the recommended level to optimize the microbial community is 14.5 mg/dl of N-NH3 in the rumen of goats fed buffel grass.