To determine potential surrogates of littoral macroinvertebrate communities for marine bioassessment and for evaluating biological conservation, the different taxonomic resolutions as surrogates were studied based on six datasets collected from intertidal zones of the Yellow Sea, near Qingdao, northern China, during the period of 1989–1998. Samples were collected yearly at five stations with different bottom types during the summer season (June). The genus- and family-level resolutions maintained sufficient information to analyse the ecological patterns of the macroinvertebrate communities for assessing ecological quality status in littoral ecosystems. The mollusc assemblages, alone or in combination with arthropod assemblages, may be used as a surrogate of littoral macroinvertebrate communities, at both species- and genus-level resolutions. The results suggest that the use of simplifications in macroinvertebrate fauna at genus-level resolutions or using smaller taxonomic assemblages (e.g. molluscs and arthropods) are time-efficient and would allow improving sampling strategies of large spatial/temporal scale bioassessment programmes and biological conservation researches in littoral ecosystems.

This study monitors the spatial and temporal variability of sea ambient noise (SAN) in the Cres-Lošinj archipelago from 2007 to 2009 (north-eastern Adriatic Sea, Croatia). The archipelago is an important marine habitat for many protected species, including the bottlenose dolphin (Tursiops truncatus) that is considered as vulnerable to disturbance from intense local vessel traffic. Systematic monthly sampling of SAN was carried out at ten predefined acoustic stations. Data on the presence, type and distance of vessels from these stations was also collected during sampling and vessels were allocated into four main classes. A sample of noise produced by a representative vessel of each vessel class was collected and the noise levels were extracted on the 1/3 octave band standard centre frequencies. All the recordings were analysed in terms of instantaneous sound pressure level (LLSP, L-weighted, 63 Hz–20 kHz, root mean square fast). The equivalent continuous sound pressure levels (LLeq) for vessel and SAN were calculated averaging the LLSP of vessel and SAN samples. Results indicate an increase of SAN levels particularly in the range of low frequencies (63 Hz–1 kHz) during the tourist season. A positive relationship was found between the spatial and temporal distribution of SAN and seasonal changes in anthropogenic pressure, in terms of vessel traffic. Potential implications for local marine life, with particular reference to bottlenose dolphins, are discussed.

It has been amply demonstrated that trawl fishing affects overall biomass, size and species structure of demersal fish communities, and an increasing number of studies are proving that this could have even greater unexpected effects on biological diversity. The aims of this study are: (1) to examine the temporal trends of several ecological diversity indices for middle-slope communities in specific locations within the Sardinian seas, which have been recently subject to increasing fishing capacity; and (2) to simulate the Shannon's entropy (H′) temporal trend, using a multiple linear regression, in order to investigate about the relationships between fishing effort and species diversity. The data come from 11 MEDITS trawl surveys (1994 to 2004). Temporal trends in fishing effort were analysed and ecological diversity indices were measured. Analysis was conducted for four areas (NW, NE, SE, SSW). Significant variations over time in both fishing pressure and ecological diversity indices were found for the southern zones. More precisely, the SE zone showed an increase in fishing effort (+120% in 2004), and a decrease of Shannon–Weiner's diversity. The SSW zone exhibited a 22.6% increase of fishing effort and a decrease of species richness. The best model of H′ incorporates species richness and fishing effort expressed as number of boats per trawling area. Our results seem to indicate that fishing pressure affected the species richness and the abundance of middle-slope species and that variation in ecological diversity indices differed with different levels of fishing effort.

Establishing baseline data on the abundance of threatened shark species is critical for monitoring site- and region-specific population tends over time. This is of particular importance for monitoring sharks at remote locations or in regions where there are no reliable data on shark numbers, fishing effort and current population status. Through establishing a standardized recreational SCUBA diver observation programme, this study examined the number, size and sex-composition of grey reef sharks, Carcharhinus amblyrhynchos, on a remote coral reef system off the Red Sea coast of Sudan. In addition, placard tags were attached to individual sharks to examine coarse scale residency and movement patterns and to determine the effectiveness of this technique. Over a 4.5 month period (December 2007–April 2008), a mean (±SE) of 5.9 ± 0.3 grey reef sharks were observed per diving day with peak numbers of sharks associated with temperatures of 26–26.9°C and strong currents. Estimated mean (±SE) total length of observed sharks was 1.9 ± 0.03 m identifying that most animals were mature. Female sharks were dominant on the site and pregnant females were recorded. Placard tagged sharks (N = 4) were observed by recreational SCUBA divers throughout the study period (23.1%, 20.0%, 16.9% and 3.1% of total observation diving days) indicating sporadic site attachment. The placard tags remained intact and were free of fouling for a total of 175 days. The numbers of grey reef sharks seen on this Red Sea coral complex suggest a healthy, relatively unexploited population. This study demonstrates that the recreational diver community, which forms a large pool of skilled volunteers, can generate baseline data on shark numbers at regularly dived sites and provide insights into the ecology of the observed species. Modification of placard tags, including attachment to the dorsal fin and time corrodible release systems may provide an inexpensive and accepted tool for monitoring individual shark residency and movement patterns. Engaging the recreational SCUBA diver community in a standardized scientific monitoring programme has the potential to monitor trends in shark populations over large spatial and temporal scales.

The analysis of changes in benthic community structure using multivariate techniques has been successfully applied to the detection and monitoring of impacts caused by oil related activities. A survey to assess the status of the benthos was performed prior to a scheduled exploratory drilling at Banco Sarmiento, a shoal located off the eastern mouth of the Strait of Magellan (south-west Atlantic). The aims of this study are to provide baseline data about the composition and structure of the subtidal macrobenthic assemblages, to analyse the relationships between biodiversity and environmental variables, and to compare its benthic assemblages with those of neighbouring areas. Multivariate analyses classified the stations in two major groups, one composed of relatively shallow stations with coarse sediments dominated by filter-feeders, and the other consisting of stations with a high proportion of sand and mud dominated by deposit-feeders. Poorly sorted sediments had higher species richness than well sorted sediments. Shallow stations showed the lowest taxonomic distinctness due to the occurrence of a high proportion of bryozoans encrusting hard substrata. A five-fold increase in biodiversity can occur at scales of tens of km, suggesting that generalizations on regional biodiversity patterns should be made with caution because of the different gears used during the collection of samples, and should be based on a thorough knowledge about the physical environment.

To enable the study of population dynamics of wild animals the determination of the age, growth rate and maturity status of a sample of the individuals present is required; consequently, obtaining repeated accurate and precise total length (TL) measurements for individuals over time can be especially valuable. However, there are limited easily applied methods to ascertain the TL of large free-swimming fish, especially the largest extant species of fish, the whale shark (Rhincodon typus). This study expands on previous work and presents the results of a robust laser photogrammetry system developed to achieve accurate TL, pre-caudal length (PCL) and further morphometric measurements of whale sharks observed between 2009 and 2011 in seasonal feeding aggregations located in the Seychelles and Djibouti. Calculations for repeatability (r) indicated a high level of precision for the system with r approaching 1 for both TL and PCL, increasing further with the use of morphometric measurements. TL measurements of ‘straight sample sharks’ also provided geometric mean linear regression equations to enable the prediction of TL from defined morphological indices. Continuous validation of the system against objects of a fixed length also indicated a high level of accuracy for the method of measurement. We concluded that the laser photogrammetry system can be confidently employed to obtain accurate in-water TL, PCL and morphometric measurements for R. typus, with wide ranging implications and applications for the study of R. typus, and other large marine fauna.

The relationship between the ciliate community and the environmental variables in Ushuaia and Golondrina bays (54°79′S 68°22′W and 54°85′S 68°36′W, respectively) in the Beagle Channel, Argentina was investigated. The study was performed in three zones within the bays, previously delimited on the basis of their water quality. The most perturbed sites were located inshore. In order to analyse the contribution of each species to the similarity or dissimilarity between zones, similarity percentages analysis was undertaken using the Bray–Curtis similarity index. The variations in species composition and dominance in the selected zones were examined by the abundance–biomass comparison plot. We also studied the relationship between environmental and ciliates variability. The ciliate community comprised a total of 43 species belonging to 15 genera. Ciliate abundance and biomass varied temporally and spatially. A more diverse community dominated by small and opportunistic species tolerant to environmental changes was found in the most perturbed zone, while in the less stressed zone the community comprised bigger species, probably adapted to more stable environmental conditions. A community comprising species from both zones was found in a transitional area. We conclude that the structure of the community varied closely with environmental conditions.

Sponges (phylum Porifera) are important components of the benthic marine fauna known for their interactions with vertebrates and a large number of invertebrates seeking for food, shelter or substrate for attachment. Studies on this subject, however, were restricted only to the macrofauna inhabiting sponges of the class Demospongiae. In the present work, we describe the macrofauna associated with a calcareous sponge in Brazil, Paraleucilla magna. Individuals of this allegedly non-native species were monthly collected during one year in Rio de Janeiro (Brazil). Fifty-one taxa representing ten animal phyla were found associated with P. magna. The most frequent and abundant taxa were Crustacea, Mollusca, Polychaeta and Bryozoa, while echinoderms, cnidarians, ascidians, nemerteans, platyhelminthes and sponges were less frequent or even rare and less abundant. Juveniles of several taxa and pregnant females of Crustacea were found associated with P. magna, but these associations were not exclusive. The macrofauna associated with P. magna did not present a clear seasonality, although it was possible to observe a change in the community composition alongside the year. The volume of the sponges was significantly related to the diversity index (H′) and number of taxa, but not with evenness (J′) and number of individuals. Our results show that P. magna is used as a substrate for attachment and/or shelter by its associates and that most of these associations are just opportunistic. The data presented here reiterate a previous proposal that sponges are important biodiversity reservoirs and that they should be seriously considered in conservation programmes.

Although semi-isolated mangrove lagoons are common in the Caribbean, few studies have surveyed organisms of multiple trophic levels and taxa in these lagoons, which are characterized by a lack of adjacent seagrass and coral-reef habitats. In this study, visual surveys, minnow traps and plankton tows, which were deployed at abutting mangrove prop roots and on macro-algal beds 5 and 15 m away from the prop roots, were used to study assemblages of fish and their potential prey in a semi-isolated lagoon located on Utila, Honduras during the dry season. Assemblages of fish and macro-crustacea differed between the three distances from prop roots, while zooplankton abundances were highly variable and did not follow any distinct distribution patterns. Daytime visual surveys found that large lutjanid (snapper) juveniles, tetraodontid (pufferfish), and some species of brachyurans were more abundant near prop roots. Small lutjanid juveniles were also significantly more numerous near prop roots, but their potential prey, copepods, showed no such difference in abundance. However, 24-hour minnow trap catches found that mean fish abundance (although low) did not differ between near-mangrove transects and transects located in algal beds away from prop roots. Whereas it is well known that mangrove–seagrass habitats play a vital role for fish in open systems, low abundances of organisms in algal beds, particularly in the day time, in this study indicate that algal beds may not be as important to fish in a semi-isolated mangrove lagoon.

Microphytobenthos (MPB) contributes up to half the primary production of estuaries. These microorganisms are sensitive to changes in sediment temperatures, particularly the extreme temperatures during exposure periods. This study investigates the physiological responses of MPB to freezing temperatures at two locations near Hobart, Tasmania during winter. Photosynthetic parameters were measured at 2 mm intervals to a depth of 10 mm. FV/FM values at three different distances from the shoreline at Kings Beach and Browns River in winter were between 0.584 and 0.617. rETRmax values were between 24.696 and 20.773. Maximum α values peaked in the subsurface rather than at the sediment surface. In vitro laboratory experiments (down to −5°C) showed little difference in response between the control and treatment groups, indicating no apparent effects of short term freezing on the MPB. Little change in photosynthetic parameters in response to freezing was probably associated with the resistance of light-harvesting reactions to freezing temperatures, recovery of the plasmalemma integrity or cryoprotection. Sediment composition and species composition were similar at both sampling sites. Therefore, responses of MPB were not due to species and grain size composition.

Although taxonomic sufficiency (TS) was developed for rapid environmental assessments, it has recently been adopted to study the spatial patterns of macrobenthos in relation to natural environmental gradients. To accept TS as a routine approach in wider benthic studies, it needs to be valid for various taxa and geographically different water masses. This study examined the effects of taxonomic resolution on depth-related multivariate patterns of macrobenthic polychaetes on the western Indian continental shelf. An extensive data set based on samples collected from a wide geographical area (7°–22°N latitudes) covering a large depth gradient (30–200 m) has been analysed. Species level polychaete community data had shown a significant variation between shallow and deeper waters. Our results indicated that generic and family level data also can detect community shifts along a depth gradient in a similar way to species level data. The entire western continental margin (200 m depth) is lying in the oxygen minimum zone (dissolved oxygen <0.5 ml l−1). This study indicated that family level results were sufficient to document the correlations of low oxygen on macrobenthic polychaetes. This study also tested the effects of transformations on depth-related patterns of polychaetes. In multivariate analyses, transformations play a role in defining the balance between contributions from common and rare species in the measure of similarity of two samples. Our results showed that the type of transformations did not make any prominent differences in the multivariate analyses.

Understanding the spatial distribution of fish species and fish trophic guilds in reef environments may help improve our knowledge about ecological relationships and therefore favour sound strategies for sampling, coastal management and conservation policy. To verify if small-scale changes are important in forming the fish community structure at a tropical rocky coastal island, we assessed the depth, structural complexity and wave exposure gradients. The community structure changed along all gradients analysed. The trophic guilds found on the sheltered, low and intermediate exposure zones, in the deepest areas and in areas of highest structural complexity showed significant differences when compared with the general assemblage. Rocky reefs, even of narrow (transversal) extension, can show great changes in fish community structure at so small a scale that these changes are generally overlooked. The relationships evidenced between community and environment provide strong support for the importance of considering a wide array of such distinct environmental conditions when determining the structure patterns of the community.

The rocky shore of Punta Este, Golfo Nuevo (Patagonia, Argentina), was sampled by means of the standardized NaGISA (CoML) protocol, that was aimed to generate biodiversity baseline data in six levels, from high intertidal to 10 m depth. Based on the generated data, we analysed the benthic assemblage structure, species richness, mean abundance and the distribution pattern of invertebrate functional groups, typifying species in each intertidal and subtidal level. The intertidal sampled is exposed to extreme physical conditions higher than any other rocky shore system studied, with air temperature variation of 40°C during the year, maximum winds of 90 km/h and semidiurnal tides of 5 m amplitude; on the other hand subtidal presents less thermal variation (ΔT 10°C throughout the year) and more homogeneous physical conditions. We identified 64 taxa represented by six animal phyla: Mollusca, Arthropoda, Annelida (Polychaeta), Echinodermata, Cnidaria and Nemertea; and three algal phyla: Chlorophyta, Rhodophyta and Heterokontophyta (class: Phaeophyceae). Ordination non-metric multidimensional scaling plots showed three different assemblages in terms of species composition (intertidal, subtidal 1 m level and subtidal 5–10 m levels). The intertidal was represented by suspension feeders, mainly Mollusca. The tiny mussels Brachidontes rodriguezii and Brachidontes purpuratus, and the algae Corallina officinalis dominated the intertidal and promote positive interaction (amelioration), preventing other species from the extreme physical stress. The subtidal was mainly represented by grazers. Our results showed a tendency of suspension feeders to decrease and grazers and predators to increase from high intertidal to subtidal, probably driven by decreasing physical stress. The gastropod Tegula patagonica, the sea urchins Arbacia dufresnii and Pseudechinus magellanicus and the invasive algae Undaria pinnatifida were the most abundant species in 1 m–10 m levels. Based on previous work performed in the region, we hypothesize that the differences registered between intertidal and subtidal levels could be explained in part by an increase in physical stress at the intertidal, with low predation pressure that promotes positive interactions, while in the subtidal the increase in consumers and decrease of physical stress could lead to associational defences. Our results could be useful as baseline data to develop a sustainable network for long-term monitoring of benthic community changes due to anthropogenic activities.

An assemblage of cirratulids in a confined marine basin (Mediterranean Sea) was investigated at small spatio-temporal scales in an experiment in which artificial granules of expanded fire-clay were used as a bare substratum for colonization. Analysis of core samples of 3.5 l undisturbed natural sediments (source area) and equal volumes of artificial substratum (new settlement area), plunged into the sea bottom were carried out from May to July 2008 after 0, 15, 30 and 60 days. Caulleriella bioculata showed the highest total mean density of 10.1 ± 5.8 N l−1 in the natural sediment, and the lowest at 0.13 ± 0.08 N l−1in the artificial substratum, with a marked temporal decrease. Individuals were not strongly aggregated and were found in a deeper sediment layer. The density of large Cirriformia tentaculata was 0.5 ± 0.3 N l−1, with individuals more aggregated and confined to shallower sediments, versus 0.10 ± 0.06 N l−1 but found deeper in the artificial substratum; temporal trends were not straightforward for this species. The adult stage of sedentary cirratulids appeared to actively move into the new available substratum from the neighbouring sediments. An early cirratulid juvenile stage was observed in both microhabitats at a comparable density of 1.8 ± 2.8 N l−1 with highly aggregated individuals (cohorts). The peculiar morphology of branchiae, the threadlike body shape and the multivariate morphological differences between two sub-populations settled in the different substrata are reported for these problematic specimens.

Nothria and Anchinothria, two sister genera of onuphid worms were studied from eastern Australian waters. Nothria abyssia, with a wide distribution in Pacific and Antarctic waters is reported from slope depths south-east of Australia, while N. otsuchiensis, described from Japanese waters, was found along the eastern coast of Australia from shallow subtidal to deep slope areas. Anchinothria parvula sp. nov. is described, based on the presence of uni- and bidentate pseudocompound falcigers in the first three pairs of parapodia, absence of branchiae and appearance of limbate chaetae from chaetiger 2, subacicular hooks from chaetigers 6–8 and pectinate chaetae from chaetiger 14. The new species represents the first record of the genus in Australian waters. Ontogenetic variation of chaetal composition and morphology of parapodia was estimated in two Nothria species examined. Three size-related morphotypes with different chaetal composition and morphology of anterior falcigers were revealed in N. abyssia and N. otsuchiensis. The number of chaetigers with pseudocompound falcigers is the only character independent of size of the specimens in both examined species. Distribution of subacicular hooks and postchaetal lobes is shown to be size-dependent. The following characters are considered of diagnostic value only when scored in adults: presence/absence of simple falcigers in anterior parapodia; chaetiger of origin of limbate chaetae, pectinate chaetae, and subacicular hooks; and number of chaetigers with auricular prechaetal lobes and digitiform postchaetal lobes. The use of adult specimens with the final set of definitive morphological structures for diagnoses of Nothria species is suggested.

Vertical distribution of fish larvae can be modified by a series of physical processes occurring in the water column at different time and spatial scales and also by biological processes occurring during larval development. To assess the factors affecting the vertical distribution of larval anchoveta Engraulis ringens during austral spring, meteorological and oceanographic features were measured and stratified ichthyoplankton sampling was carried out in central Chile during active upwelling events. In November 2001, during the upwelling season, southerly winds dominate, and intrusion of low dissolved oxygen occurred in nearshore waters; preflexion larvae of E. ringens were collected in the mixed layer of the water column (the Ekman layer) irrespective of day and night hours. Larvae larger than 10 mm showed an inflated gas bladder during night collections, and non-inflated gas bladder during day hours. Larvae with inflated gas bladders were located significantly at shallower depths during night than at day hours, indicating a direct relationship between gas bladder inflation, diel vertical migration of larval E. ringens and decrease of wind-induced turbulence at night. We discuss the potential implications of larval E. ringens vertical distribution and its variability on the horizontal transport off coastal waters during the upwelling season off central Chile as a biophysical coupling to enhance coastal retention.

Haliclona indistincta has in some respects, a typical reproductive cycle for a marine haplosclerid sponge. We suggest that oocytes originate from archaeocytes and that spermatozoa originate from choanocytes. Oocytes were first seen in November and matured as eggs by May and June. Immature spermatic cysts were identified from February and mature cysts were present in May and June only. Of the individuals surveyed that had reproductive elements present (150/200), reproductive elements from a single sex were reported in over half of the specimens (59%) but there were also many hermaphrodites (41%). Embryos were first seen in June. Larvae were distributed throughout the mesohyl and were released from the end of June to the end of July. Three mobile larval stages and fusing of sibling larvae were observed. Post-settlement stages from early settlement to the development of oscula and excurrent canals are also shown. However, some elements of the larvae (uniform ciliation and no spicules at posterior pole) are not consistent with larvae from this genus.

The distribution and composition of molluscan assemblages of seagrass beds in the Ensenada de O Grove (north-western Spain), are described in this paper. The studied bottoms were mostly muddy and colonized predominantly by Zostera marina L., Z. noltei Hornemann, or by both species. Molluscan fauna was dominated by gastropods and bivalves, in terms of both species richness and abundance. A total of 7641 individuals belonging to 68 taxa was identified. The most abundant species were the gastropods Peringia ulvae, Retusa truncatula and Calyptraea chinensis and the bivalves Abra alba, Loripes lucinalis and Kurtiella bidentata. Cluster and multidimensional scaling analyses based on Bray–Curtis similarity coefficient showed two distinct faunal assemblages. Group A comprised intertidal sites colonized either by Z. noltei or by Z. marina and Z. noltei on muddy sand and sandy mud bottoms and subtidal sites exclusively colonized by Z. marina in the outer part of the inlet on muddy sand with the highest values of species richness and diversity. Group B consisted of sites characterized by low values of species diversity and a species composition typical of a ‘reduced Macoma community’. The sorting coefficient and the combination of gravel, sorting coefficient and carbonates content (BIOENV analyses) and the salinity of bottom water and depth (canonical correspondence analyses) were the most important abiotic variables in explaining the structure of the molluscan assemblage.

There have been recent attempts to improve our knowledge about dinoflagellates of the order Dinophysales either in Mexican marine waters or worldwide, and although new records and even new species have reliable illustrations and descriptions, this group is so diverse that it needs to be studied in more detail. This paper is the product of the analysis of net phytoplankton material collected from coasts of the tropical Mexican Pacific (Gulf of California, Central Mexican Pacific and Gulf of Tehuantepec), and the southern Gulf of Mexico. Material was studied using light microscopy and scanning electron microscopy (SEM). Eleven taxa (10 species and one variety) of the section Hastata were fully identified, with nine species studied for the first time by electron microscopy (only Dinophysis hastata and D. schuettii had been previously studied by SEM), and including seven new records for the Mexican Pacific (Dinophysis monacantha, D. nias, D. phalacromoides, D. pusilla, D. swezyae, D. uracantha var. mediterranea, and D. uracanthoides), and one new record for the Gulf of Mexico (Dinophysis uracanthoides). Two species remain as unidentified, as only one specimen of each was found. Additionally, we studied in detail the new species, Dinophysis conjuncta sp. nov., for which a full description is provided. Descriptions, measurements, illustrations and local distribution data are provided for each species.

The annual variations in body-size spectra of planktonic ciliate communities and their relationships to environmental conditions were studied based on a 12-month dataset (June 2007 to May 2008) from Jiaozhou Bay on the Yellow Sea coast of northern China. Based on the dataset, the body sizes of the ciliates, expressed as equivalent spherical diameters, included five ranks: S1 (5–35 μm); S2 (35–55 μm); S3 (55–75 μm); S4 (75–100 μm); and S5 (100–350 μm). These body-size ranks showed a clear temporal succession of dominance in the order of S2 (January–April) → S1 (May–July) → S4 (August–September) → S3 (October–December). Multivariate analyses showed that the temporal variations in their body-size patterns were significantly correlated with changes in environmental conditions, especially water temperature, salinity, dissolved oxygen concentration (DO) and nutrients. In terms of abundance, rank S2 was significantly correlated with water temperature, DO and nutrients, whereas ranks S4 and S5 were correlated with the salinity and nutrients respectively (P < 0.05). These results suggest that the body-size patterns of planktonic ciliate communities showed a clear temporal pattern during an annual cycle and significantly associated with environmental conditions in marine ecosystems.