Corals live in close association with bacterial communities, but the nature of the relationship is still poorly understood. In this study, three scleractinian coral species, Galaxea fascicularis, Pavona cactus and Turbinaria reniformis were incubated under different laboratory conditions, and the composition of the bacterial community associated with their tissue or skeleton was compared between species or between species and seawater using denaturing gradient gel electrophoresis (DGGE). The amount of dissolved organic carbon (DOC) excreted and the mucus glycoconjugate composition were also determined for each species. The aim of the study was to assess if the bacterial community composition was species-specific or linked either to the seawater composition, or to the quality and quantity of carbon released by each coral. Results obtained showed that DOC release was significantly different (P < 0.0001) for the three species, with the highest excretion rate for G. fascicularis. Also, the mucus of G. fascicularis and P. cactus mainly contained galactose and glucose whereas the mucus of T. reniformis contained more glucose and xylose. Cluster analyses of microbial community composition showed that the bacterial community was species-specific in the coral tissue but not in the skeleton, in all conditions. It remained specific when corals were incubated in the same or in different aquaria, and under different seawater renewal rates. Since DOC release rates and bacterial composition were both different according to the coral species considered, a link might be suggested between the two parameters. Sequencing of DGGE bands indicated that some bacterial phylotypes were consistently retrieved in all samples of a given species.

Scavengers are common in marine environments and provide an essential ecosystem service, helping to return nutrients and energy contained in carrion to the system. Knowledge of the prevalence of scavenging is required to fully understand marine food webs. As most scavengers are also predators it is usually unclear what proportion of their diet is derived from carrion, and if this proportion varies in time. In this study we set out to determine whether the input of seabird or other carrion could be detected in the stable isotope composition of the shore crab (Carcinus maenas). Shore crabs were captured in the intertidal zone of the Isle of May (Scotland) before and after the peak fledging of Atlantic puffins (Fratercula arctica). The stable isotope (δ15N and δ13C) compositions of crabs and the proposed carrion source were determined. Fifty crabs were selected (25 from before (IOM1) and 25 after the fledging period (IOM2)). IOM1 had a mean δ15N value of +13.85‰ and IOM2 a mean of +13.53‰. The mean δ13C values were –15.46‰ for IOM1 and –15.87‰ for IOM2. In contrast to our expectations, there was no evidence that shore crabs were feeding on seabird carrion following the post-fledging period of Atlantic puffins. Future sampling in autumn months following the grey seal (Halichoerus grypus) breeding season may be useful in establishing if there is another route for nutrient and energy cycling between higher predators and marine scavengers at this location.

The feeding ecology of the Brazilian silverside, Atherinella brasiliensis, in a sub-tropical estuary of Brazil was investigated through the gut analysis of 1431 individuals. We described dietary composition and analysed seasonal, estuarine habitat, and body size variations in the diet; trophic level; feeding diversity; and gut fullness indices. Results reveal that A. brasiliensis is a typical, generalistic and opportunistic predator that makes use of a wide array of prey types (at least 89 different types), with zooplankton (mainly calanoids), diatoms, terrestrial insects, and plant detritus making up the bulk of the overall diet. The exotic calanoid Temora turbinata ranked as the primary prey. A wide feeding diversity (mean H′ = 2.26), low trophic level (mean TROPH = 2.57), and high gut replenishment were persistent across seasons and habitats. Diet composition varied largely and significantly with respect to habitat, season, and body size. A closer assessment showed that habitat and season had a stronger effect on diet than fish size.

A detailed account is given for the first time of the biological morphology of pinnid larvae taken from the north-west Atlantic. Three species were present in plankton samples taken from depths of 150–200 m. These were maintained in small aquaria and details of their anatomy, development and metamorphosis recorded and illustrated as far as the young adult stage.

In order to determine the changes in the relative importance of different kinds of preys as larval anchoveta Engralis ringens grows, the present study reports information about feeding incidence, type, size, and carbon content estimates of preys, at the beginning of the main spawning season in mid-winter off central Chile. Our results show a mixed diet initially dominated by phytoplankton and later switching to zooplankton in older larvae. While larval anchoveta grows, they feed on preys whose widths do not vary much compared to their body length and volume. These preys might be different taxa or a single species whose body widths vary little among life stages (i.e. nauplii and copepodites). Differences in estimated carbon content were observed among food items and a marked increase in carbon consumption was observed in the larger larval sizes (>9 mm standard length). These ontogenetic changes in feeding are coincident with the increased proportion of larger preys and also with the number of preys consumed by larger larvae.

To reveal the annual patterns of planktonic ciliate communities, planktonic ciliate species composition, abundance and biomass, and responses to environmental conditions, were investigated during an annual cycle in Jiaozhou Bay, Qingdao, northern China. A total of 64 species belonging to five orders (Oligotrichida, Haptorida, Cyrtophorida, Hypotrichida and Tintinnida) were identified, 9 of which were dominant. Ciliate communities presented a clear seasonal pattern in terms of both abundance and biomass. A single peak of ciliate abundance and biomass occurred in late August, mainly due to the oligotrichids, tintinnids and haptorids. The 9 dominant species showed a distinct temporal distribution with seasonal successions of ciliate communities. Multivariate analyses revealed that ciliate abundance was significantly correlated with water temperature, dissolved oxygen and nutrients, especially nitrate nitrogen and soluble reactive phosphate (P < 0.05). These findings provided basic data on annual cycle of planktonic ciliate communities in a semi-enclosed bay of Yellow Sea, northern China.

The distribution and ecology of scleractinian corals on reef ecosystems along the coast of the State of Alagoas, north-east Brazil, were characterized. The scleractinians comprised 13 species in nine families, with five endemic corals, on the Alagoas coast. All of these species were found on reef ecosystems of two distinct geological origins. Coral reefs are predominant on the northern and central coast with banks near the beach line and distributed along the coast line, with many platform surfaces emerging during low tide. Sandstone reefs are more common along the south coast of Maceió city and the southern coast of Alagoas. These reefs were formed by old sand banks solidified through sedimentation starting from chemical reactions with calcium carbonate or iron oxide from the Quaternary period, and are generally in rows parallel to the coastline and near the outlets of rivers and estuaries. A few species including Favia gravida and Siderastrea stellata were found in the intertidal zone on top of the reef platform of both types of reefs. The other scleractinian species were observed on the reef borders where there were some inlets and channels. A larger number of coral species occur on the northern coast where the seawater is clearer throughout the year.

This study is the first work on the reproductive biology of lessepsian bivalve Fulvia fragilis. Monthly and bimonthly samplings were made in the period from April 2006 to October 2007, at the Bay of Tunis (northern Tunisia). From histological preparations of gonad, a gametogenic scale was drawn up based on eight stages: sexual rest; initiation of gametogenesis; advanced gametogenesis; ripe; partial spawning; advanced spawning; restoration; and spent. After examination of gonad preparations, F. fragilis appeared to be a simultaneous hermaphrodite species. Spawning was continuous all along the year, scarce in winter and with peaks during the rest of the year. The spawning peaks were positively correlated with the rise of the sea surface temperature and the nutrient availability. Furthermore, the presence of oocytes surrounded by spermatozoa in female and male follicles and in male gonoducts was observed. Self-fertilization may occur in this species. High summer mortalities probably due to the combination of vulnerability of the bivalve in response to the reproductive effort and high temperature stress were recorded. The F. fragilis reproduction strategy explains the success of its installation on the Tunisian coast.

Hamel et al. (2008) reported that veliger larvae of the nudibranch gastropod Palio dubia settled 1 to 3 days after hatching and that metamorphosis commenced shortly thereafter. This is an anomalously short larval period for a nudibranch described as having planktotrophic development. I examined the embryonic development and hatching larvae of P. dubia collected intertidally from Maine, USA. Veliger larvae with shells 120 μm long and lacking eyespots and propodia developed in 7 days at 20°C from eggs averaging 69 μm in diameter. Their size and morphology were typical of planktotrophic nudibranchs known to have minimum larval periods of weeks to months, and the available evidence does not suggest any other mode of development exists in P. dubia. The larval period of P. dubia is likely an order of magnitude longer than reported by Hamel et al. (2008).

Lophelia pertusa, a cosmopolitan cold-water coral, offers potential for new palaeoclimate proxies. This study investigated its skeletal growth patterns to aid in this development. Corallite characteristics (calyx diameter, height, thecal width and banding) of L. pertusa sampled from oil platforms in the northern North Sea were examined. The mean distance between daughter polyps along a growth axis (27.4 ± 5 mm, SD) was equivalent to the estimated annual growth rate; hence, the polyps bud once a year. The majority of growth occurred in the first year when the characteristic trumpet shape of a corallite was formed, while the thecal wall thickened more consistently. Further examination of two polyps showed a dark growth band and centres of calcification along the full length of the inner theca, which represents early skeletal growth. Skeletal sampling adjacent to this area along sequential polyps shows promise as an annual chronology in these North Sea corals.

Many crustaceans with spatial segregation may present differential body coloration depending on the habitat they inhabit. Since crustaceans are unable to synthesize carotenoids, individuals must acquire them from their diet, so diet changes can modify individual coloration. The burrowing crab Neohelice (=Chasmagnathus) granulata inhabits the intertidal, from the uppermost parts of salt marshes to the lowest mudflat zones with a spatial segregation of different size-classes. They are primarily deposit feeders in mud flats and herbivorous–detritivorous in the salt marsh. We analysed the effect of intermoult length on the carapace colour of N. granulata, and the changes in carapace colour with crab size and zone. Crab colour varied between unvegetated and vegetated areas. Some of these differences were in part caused by colour changes related to crab size. Larger crabs show less intensive colours, and given that they inhabit the upper part of the intertidal a differential coloration pattern occurred between zones. In field experiments intermoult duration affected crab colour and some body regions analysed showed differences between zones unrelated to size.

Two new species belonging to the precious coral genus Corallium were collected during a series of exploratory cruises to the New England and Corner Rise Seamounts in 2003–2005. One red species, Corallium bathyrubrum sp. nov., and one white species, C. bayeri sp. nov., are described. Corallium bathyrubrum is the first red Corallium to be reported from the western Atlantic. An additional species, C. niobe Bayer, 1964 originally described from the Straits of Florida, was also collected and its description augmented.

The morphostructures of larval and juvenile shells of two common species of bivalves of the north-western Sea of Japan, Mytilus trossulus and Crenomytilus grayanus have been examinated. Two types of morphological features were identified on the basis of the results obtained and comparison with materials of other species of the subfamily Mytilinae. One group of morphological features (absence or presence of the nepioconch; form and size of posterior lateral teeth) characterizes the higher taxonomic categories, while the other one (morphological details of general outline of the secondary prodissoconch and juvenile shell; ratio shell height/length; form, size and number of provincular and additional teeth; number of posterior lateral teeth, and others) serves to separate taxa of the generic or specific ranks.

The dominant intertidal algal species from Tarifa Island, Strait of Gibraltar, together with the associated peracarid crustacean community, were studied over a two-year period (December 2005–December 2007). Gelidium corneum and Gymnogongrus patens were dominant at the lower levels, close to the subtidal. Valonia utricularis, Osmundea pinnatifida, a turf of Caulacanthus ustulatus and Gelidium spp., Corallina elongata and Jania rubens were distributed in intermediate levels, while Ulva rigida, Chaetomorpha aerea and Fucus spiralis were collected from upper levels. The main intertidal seaweeds of Tarifa Island showed a perennial behaviour, but maximum values of biomass were registered during late spring and beginning of summer for most of species while the highest seawater temperatures were measured in late summer and beginning of autumn. Corallina elongata and Jania rubens, the dominant species which shared a niche at platforms of intermediate levels, showed an opposite behaviour, probably to avoid competence: C. elongata showed higher biomass in April–June and lower values in August–October–December, while biomass of J. rubens was higher in December–February and lower in April–August. Associated crustaceans, including mainly amphipods (gammarids and caprellids) were also present throughout the whole year with similar seasonality to seaweeds. However, crustacean density in the intertidal was not only influenced by distribution of algae as substrate, but also by external factors, such as hydrodynamism, oxygen, weather conditions, competition or predation. The present study constitutes the first baseline study dealing with seasonal fluctuations of algae and associated crustaceans in a protected area of the Strait of Gibraltar, an important biogeographical zone between Europe and Africa and the Mediterranean and Atlantic.

Normal females of the mud shrimp, Upogebia major, have a pair of pleopods on the first abdominal segment, while normal males do not. We have investigated nine populations in the Seto-Inland Sea, Japan, and found morphological disorders on the first abdominal segments of both males and females. In males, the first pleopods occurred. Morphology and arrangement of these additional pleopods were classified into four types. The pleopods of Types M-1 and M-2 were similar in structure to those of normal females. These males could be considered as de-masculinized individuals, and the occurrence of males with these morphological disorders showed local variation: while their frequency was high in two specific sites in Kasaoka Inlet (11.5% in Site 6 and 5.5% in Site 7), it was less than 3.5% in other sites. Other types had abnormal additional appendages similar to the walking legs (pereiopods) (Type M-3) or biramous leaf-like pleopods (Type M-4), but their frequency was extremely low (only 3 out of 1558 males inspected). Morphological disorders in males (Types M-1 and M-2) occurred independently of gonadal development, and did not affect the sexual characteristics as revealed by analyses of allometric growth and gonadal index. In females, morphological disorders were classified into five types: incomplete first pleopods (Type F-1); lack of the first pleopods (Type F-2 and F-3); transformation into the pereiopod-like pleopods (Type F-4); and biramous leaf-like pleopods (Type F-5). The frequency of Types 1–3 was especially high in Site 6 in Kasaoka Inlet (24.4%), but was less than 9.4% in other sites. A feature was that cuticular lesions often co-occurred with the morphological disorders. Possible causal factors of these abnormalities are discussed.

Morphometric and gonad maturity of Libinia spinosa on the coast of Mar del Plata, Argentina, were assessed. In both sexes various morphometric features were measured to determine the morphometric maturity, and through macroscopic inspection of gonads and analysis of its content, different stages of gonad maturity were described and the physiological maturity was estimated. In females, the carapace width ranged from 8 to 56.5 mm while in males from 4.6 to 81.97 mm. The size at which 50% of females were morphometrically mature was calculated at 40.6 mm. Based on the allometric growth of the abdomen, two morphometric groups of females were recognized as juvenile and adult phases. In males, results of principal component analysis showed that the most suitable variables that efficiently represent the size and sexual differentiation factor were the carapace width and cheliped length respectively. The size at which 50% of males were morphometrically mature was estimated at 58.9 mm. Based on the allometry of the cheliped growth, two morphometric groups were recognized as immature and mature phases. Males maintained under laboratory conditions moulted and growth was related to regular and terminal moults. Males reached their terminal moult at a wide size-range, from 48.5 mm to 61.4 mm of carapace width. This terminal moult coincided with the size of morphometric maturity. In both sexes four stages of gonad development were described, two corresponded to immature phases and two to mature phases. The size at which 50% of females and males reached gonad maturity was LC50 = 40.33 mm and LC50 = 33.6 mm, respectively. In females, both morphometric and gonad maturity occurred at a similar size. In males, gonad maturity is acquired prior to morphometric maturity, thus three different types of males were characterized: (1) those with small carapace width and cheliped, without spermatophores in their vas deferens; (2) those with large carapace width and small cheliped, bearing spermatophores in their vas deferens; and (3) those with large carapace width and cheliped, bearing spermatophores in their vas deferens.

A new species, Philosyrtis aegusae sp. nov., collected in the ‘Otoplanen-Zone’ of the sands of western Sicily, is described. The specimens show the typical morphological peculiarities of the subfamily Parotoplaninae (‘Turbellaria’: Otoplanidae), but differ clearly from the species already described. The body length of the sexually mature animals reaches 0.9–1.1 mm and they appear to belong to the genus Philosyrtis because of the general arrangement of testes and germo-vitellaria, and of the sclerotic apparatus. The vesicula granulorum is clearly distinct from the sclerotic apparatus unlike the other ten species belonging to the same genus. The male copulatory organ consists of a dorsal group of 7–8 spines similar in shape and length (33–40 mm), and a ventral group of at least 6 long thin spines with curved pointed tips. The new species differs from the already described species above all in its body dimensions, the shorter path of the vitellaries and especially the characteristics of the male sclerotic apparatus.

Macroscopic maturity staging data are widely used to distinguish between reproductive and non-reproductive individuals. The implicit assumption is that these data are accurate. The accuracy of macroscopic maturity staging of North Sea herring (Clupea harengus) has not been checked since the macroscopic scale was produced in 1961. The aim of this study was to assess the accuracy of macroscopic maturity staging of female North Sea herring by comparison to histological staging and the gonadosomatic index (GSI). Ovary samples were collected during the North Sea Herring Acoustic Survey in 2006 on-board FRV ‘Scotia’ (Scotland) and in 2007 on-board FRV ‘Scotia’ and RV ‘Johan Hjort’ (Norway). Commercial samples were also collected by Marine Scotland, Aberdeen in both years. The maturity staging error was relatively low in 2006 (21% error) but was much higher on-board FRV ‘Scotia’ (57%) and RV ‘Johan Hjort’ (47%) in 2007. There was estimated to be a 27% under-estimation of the spawning stock biomass (SSB) in 2007 due to the differences in the proportion mature but no change in SSB estimates in 2006. GSI cut-off scores, estimated by means of multinomial regression models were successfully able to separate immature females from both mature-active and recovering females; however, there was some overlap between the mature-active and recovering individuals. We conclude that an effective and low-cost means of reducing error in herring maturity studies is the combined use of a four-point macroscopic maturity scale with routinely collected GSI data, the latter acting to validate and fine tune macroscopic staging.

Characterization of suitable habitat for settlement of juvenile flatfish is important for the management of nursery areas. Food availability is one important determinant of habitat quality that can affect the condition and growth, and thus survival, of flatfish. Spatial and temporal variation in diet has been widely studied for several species of flatfish. However, levels of intraspecific variation in diet at small spatial scales are relatively unknown, with most studies focusing only on large scale variability. This study investigates how diet, growth and condition of juvenile plaice, Pleuronectes platessa, varies over two spatial scales (10s of kilometres and 100s of metres). Juvenile plaice were collected from three beaches and from three replicate hauls on each beach using a beach seine in September 2007 and 2008. Gut content analyses of 108 juvenile plaice within the size-range of 70–90 mm were carried out. Diet composition in plaice guts differed among beaches and hauls suggesting that food abundance and availability differed at both spatial scales. A significant positive correlation was observed between a morphological condition index and the prey diversity in the gut. This suggests that fish which specialize on a limited number of prey items (perhaps due to a greater abundance of certain prey) may do better than fish which feed on a wide range of prey types. Significant differences in condition were observed between hauls and between beaches, while recent and total otolith growth varied between beaches but not between hauls. The results highlight the importance of considering small scale variation when attempting to link habitat quality to feeding, growth and condition of juvenile flatfish.

Gametogenesis and reproductive periodicity of the solitary scleractinians Flabellum alabastrum (from the Rockall Trough) and F. angulare (from the Porcupine Seabight) were investigated. Samples were collected between depths from 1370 to 2190 m for F. alabastrum and 2412 to 2467 m for F. angulare. Both species showed gonochorism with a 1:1 sex-ratio and broadcast spawning of gametes is inferred from the lack of brooded planulae. Oocyte sizes were large in both species (925 μm in F. alabastrum and 1015 μm in F. angulare), suggesting lecithotrophic larval development. Fecundity and periodicity of oocyte development differed between the two species. Flabellum alabastrum produced a maximum of 2800 oocytes per polyp quasi-continuously, whereas the deeper species F. angulare produced a maximum of 550 oocytes per polyp either seasonally or periodically. Both species showed size-dependent fecundity. The data show a decrease in oocyte size and fecundity with depth, in concordance with other deep-water scleractinian species.