The analyses presented in this paper provide evidence that several community metrics and indicators of the inner shelf community in the Cantabrian Sea show response to placement of anti-trawling reefs. Total biomass, species richness, and to a lesser extent, maximum length and percentage of large fish, were sensitive to exclusion of trawling. Density, diversity and average trophic level did not show this sensitivity. The main species profiting from trawl exclusion were seabreams (Sparidae), catsharks and skates (Elasmobranchii), red mullets (Mullidae), gurnards (Triglidae) and John Dory (Zeus faber). Conversely, the main fishery target species (hake, anglerfish and megrim) showed a progressive decrease in abundance during the study period, a pattern which was also shown by their total stock biomass in the totality of the shelf area. Sea urchins, cephalopods and gastropods also increased in relative abundance with trawl exclusion. Reef age was identified as a key factor in reef development. After reef deployments, two periods were identified: (1) a recovery period, in which total biomass increased, mainly as a consequence of the increase in generalist species (e.g. catsharks); and (2) a consolidation period, during which biomass increased again, mainly as a consequence of an increase in specialized stenoic species (e.g. sparids), while biomass of generalist species remained constant or declined.

Functional morphology of the male gonopods, female holding systems and vulvae of Libinia spinosa are described using scanning electron microscopy and histological sections, establishing differences between immature and mature individuals. The first gonopod of mature males, larger than 35.1 mm of carapace width (CW), is long, slender, and ending in two wing-like processes; abdominal, characterized by the presence of a sub-terminal seminal canal, and sternal, closed and where the cuticle holds setae. In immature males, smaller than 29.9 mm CW, both processes are shorter, and the tip of the abdominal process closed. Six different types of setae are described for both gonopods. Internally, the gonopods have rosette glands in immature and mature individuals. The presence of secretions, which may be involved in the moulting process, was observed in immature males towards the external cuticle corresponding to the rosette glands. The rosette glands may be related to reproduction in mature males. Females presented a press-button holding system and a biconcave vulva. In immature females, smaller than 36.1 mm CW, the vulva aperture was closed by integument bulging to the outside. In mature females, larger than 42.6 mm CW, the locking system was almost fused to the cuticle, and the vulvae showed an open biconcave form with a more inner flexible membrane. Morphological characteristics shown by the gonopods of mature males develop synchronously with the acquisition of physiological maturity, not with morphometrical maturity. The mature holding systems and vulvae of females are developed synchronously with physiological and morphometrical maturity.

The patterns of decapod larvae occurrence and abundance were studied from weekly time-series data of 8 years from Stonehaven (north-east Scotland) and 4 years and 8 months from Loch Ewe (north-west Scotland). The annual cycle observed was similar in the two locations and characterized by abundance peaks, the first in spring and another in the summer, extending into autumn. During the coldest months (December to February) decapod larvae were virtually absent in the plankton. Differences in abundance and occurrence of decapod larvae between locations and the influence of temperature, salinity and chlorophyll-a in the patterns observed, were analysed by generalized least-square functions. The results showed significant differences in the abundance of decapod larvae between locations, with higher larval abundances and an earlier appearance in the plankton in Loch Ewe (west coast). In Stonehaven (east coast), from 2003 onwards, a general increasing trend in the abundance of decapod larvae was observed, related to the increasing temperatures recorded at that site. The data demonstrate the high variability of decapod larval abundance on an annual basis and the high importance of temperature and chlorophyll-a to the occurrence and abundance of decapod larvae.

The most frequently caught skate species around Jersey include blonde ray Raja brachyura, undulate ray Raja undulata, small-eyed ray Raja microocellata and thornback ray Raja clavata. Between September 2006 and December 2008, a total of 814 individuals were tagged and released, of which 64% were small-eyed ray, 22.6% blonde ray and 12.4% undulate ray. The size distribution, sex-ratio and maturity of these samples are summarized. There were 138 reported recaptures (return rate = 17.1%), with most fish recaptured from the study area. Indeed, many of the tagged skates were recaptured within the same release area or within 20 km, indicating high site fidelity, with the longest distance travelled only 61 km. Thirteen fish were recaptured on multiple (2–4) occasions. To date the longest time at liberty has been 754 days. These results are discussed in relation to our current knowledge of the stock structure and exploitation of skates in the western English Channel.

Phylogeography and population genetic studies in the Porifera have been limited by the lack of available polymorphic DNA markers. In this paper, we tested four new mitochondrial markers in nine demosponge species from a wide taxonomic range: partial sequences of the ATP synthase 6 (ATP6) and the cytochrome oxidase 2 (CO2) genes and two spacers: one located between ATP6 and CO2 and the other between the NADH dehydrogenase subunit 5 (ND5) and the small subunit ribosomal RNA (rns) genes. The new markers presented levels of nucleotide diversity up to 2.4 times higher (π = 0.015 for CO2) than those observed for the most commonly used mitochondrial marker in sponges, the cytochrome oxidase 1 gene (π = 0.006), making them suitable for alpha-level systematics, phylogeography and population genetics studies. 

The jumbo squid Dosidicus gigas is the only ommastrephid commercially caught in Mexico. Despite the economic and ecological importance of this species, little is known about its early life stages. The relationship between the presence of paralarvae and mesoscale oceanic features was investigated for the first time in the central Gulf of California, Mexico in February, April, June and September of 2008. A total of 86 paralarvae were found only in June and September (summer season), in the well-stratified column water where the thermocline was evident and warm sea surface waters (27.7° to 29.4°C) dominated. The greatest abundance of D. gigas paralarvae was observed within 2.23 to 3.48 km of the main front. The mantle length of the smallest paralarvae corresponded with the mantle length at hatching. The San Pedro Mártir Island–Santa Rosalia transect and Santa Rosalia–Guaymas transect were determined as the main hatching localities in June and September respectively. The number of paralarvae found in this study contrast with the potential fecundity of mature females which are found throughout the year.

This work focuses on the species associations of the Baronie Seamount (north-eastern Sardinia, Italy), according to variations in depth and time of day. The aim was to highlight the potential vertical movements of the species and to compare these results to existing data from a submarine canyon. Twenty-two samples were taken at different depths and times along two trawl lines over the seamount. A total of 94 species were caught; among these, 48 bony fish, 9 cartilaginous fish, 13 molluscs and 24 crustaceans were selected for analysis. Cluster analysis showed 3 groups in which both depth and time of day play an important role in grouping. Nine species showed some daily and nocturnal movement, probably linked to trophic requirements. The daily movements according to size and sex of the shrimps Aristaeomorpha foliacea and Aristeus antennatus were also studied. For these two populations, the analysis showed an uneven distribution and the diel cycle appears to involve only the females. These species seem to adapt their life cycle to the geomorphology of the sea bottom. The diurnal movements from the base of the seamount to the edge of the continental shelf increase the range of the species distribution. In fact, the seamount, due to its geomorphological conformation, offers these species the opportunity to very quickly span a considerable range of depths. These movements are known to occur in the continental shelf and slope, but in the seamount they are broadened and can be studied more easily.

Boring sponge diversity in the area of the Conero Promontory, the most important rocky emergence on the west coast of the Adriatic Sea (Italy), was assessed. Four species were recorded; one of them, Cliona adriatica, is new and is described here. The new species differs from all the other excavating sponge species, characterized by yellow papillae and lacking or scarcity of microscleres, in the large size of the boring chambers and the presence of numerous styles. Cliona adriatica is present on about 12% of the surface of rocky bottoms in the Conero Promontory area. The impact of this highly destructive species on the carbonatic micritic rock of the promontory was evaluated calculating a relationship between the volume of the boring chambers and the surface of the epilithic portions. Consequently, it was estimated that 1 cm2 of epilithic tissue corresponds to 8.5 g of excavated rock. The recorded correlation between the excavated volume and the area of the papillar zone (roughly the area of the substratum affected by the erosion) allows an estimation of the substratum removed by a boring sponge, using only visually oriented, non-destructive, sampling methods.

Halicarcinus planatus is the only species of the genus occurring at the southern tip of South America, in sub-Antarctic, cold-temperate waters. Previously it has been shown that the population from the estuary of the Deseado River presents a spatial segregation by sex, a complete overlapping of sizes among adolescents and adult females. Females go through two reproductive seasons, separated by a resting period during late summer and early autumn, and 7 to 8 spawns are produced following a single mating. The aims of the present work were to evaluate the duration of the embryonic development until hatching during successive spawning, to determine the fecundity and to discuss the adaptive reproductive strategies of this population. Breeding occurs from nearly 2°C to above 16°C. The incubation period lasts nearly 100 days in winter and between 30 and 40 days in summer. The fecundity ranged from 210 to 2150 eggs, it differs between successive spawning and a positive relationship was found between fecundity and carapace width. This population has the highest fecundity compared to other populations, but also compared to other species of the genus. The high number of successive spawns is directly linked to the increase of seawater temperature by the end of spring and during summer. This way, this species would be very well adapted to live in the more temperate waters of Patagonian coasts.

This study analyses the significance of shell morphological variations in the venerid clam Tawera gayi, a typical element of shallow marine soft bottoms in southern South America and the most common species recovered from Late Quaternary marine deposits along the Beagle Channel, Tierra del Fuego. Fossil and modern Tawera shells from different localities around the southern tip of South America were analysed using the Elliptic Fourier Analysis (EFA) method. Taking into account the palaeontological history of this genus in the southern hemisphere, EFA was also performed on shells of Tawera congeners from South Africa (T. philomela) and New Zealand (T. spissa). The use of EFA permitted the distinction between the three Tawera species and geographical differentiation in the T. gayi groups. These morphological variations of T. gayi appear best related to ecophenotypic plasticity as a response to different environmental conditions, although the palaeobiogeographical history of Tawera in South America cannot be ruled out.

The spiny dogfish Squalus acanthias is widely distributed in Atlanto-Mediterranean regions, being captured off the Languedocian coast (southern France, northern Mediterranean), despite a decline of landings. The male and female sexually matured between 635–700 mm and 860–880 mm total length (TL), respectively. The largest male and female were 800 mm and 1110 mm TL, respectively and weighed 2220 g and 8900 g, respectively. There was a significant relationship for total mass versus TL, and liver mass versus TL between males and females. The diameter of the largest yolky oocytes ranged between 43 and 47 mm (mean 45.08 ± 0.98), while the mass ranged between 29.5 and 37.4 g (mean 31.79 ± 2.20). Near- term embryos ranged from 245 to 271 mm TL (mean: 258.85 ± 7.28) and weighed from 47.5 to 55.9 g (mean 53.35 ± 2.26). Ovarian fecundity ranged from 6 to 15 (mean = 10.38 ± 2.66). Uterine fecundity or litter size ranged from 4 to 12 (mean = 8.15 ± 2.07). Both fecundities showed a positive relationship with TL of females. A chemical balance of development based on mean dry masses of yolky oocytes and near-term embryos was 0.87 and suggested that S. acanthias is a pure lecithotrophic species. Hepatosomatic index (HSI) and gonadosomatic index (GSI) significantly increased with size in both males and females. HSI reached the highest values in both sub-adult and adult specimens, reflecting the role of the liver in the gonadal production as well as in buoyancy, while in the GSI the highest values were observed in pregnant females. Vitellogenesis proceeds in parallel with embryonic development. Near-term females were captured in different months of the year while a short period of resting could not be excluded between parturition and the beginning of a new pregnancy, so it appears difficult to delineate the length of gestation. However, a reproductive cycle with a wide range from 18 to 24 months remains a suitable hypothesis.

The nurse shark, Ginglymostoma cirratum, is considered an endangered species in Brazil and its capture by fisheries forbidden. Despite such legislation, nurse sharks continue to be caught as these laws are unenforced and fisheries are not monitored. The goal of the present study was to describe the population structure of nurse sharks caught off Ceará State, north-eastern Brazil, based on the following aspects: abundance and size, sex-ratio, fisheries incidence and seasonality of captures. Landings were monitored weekly during a two-year period. A total of 189 specimens were recorded. Total length (TL) varied between 73 and 274 cm. The male–female ratio did not differ significantly (1.19♀:1♂). TL of individuals landed as carcasses was estimated based on interdorsal length. The following equation was obtained for males and females: TL = 12.606ID + 14.24 (R2 = 0.9505). Most of the landed sharks were juveniles (86.2%). No seasonal pattern of abundance and TL variation was observed. Management of this fishery is required in order to prevent localized over-fishing of nurse sharks.

This work provides information about the fish assemblage structure along the estuarine gradient of Baía da Babitonga, south Brazil. The seasonal and spatial dynamics of fish and their relationship with physical–chemical variables were investigated. A total of 70,085 fish of 70 taxa were collected. Late larva and early juveniles of Engraulidae, Eucinostomus spp. and Mugil spp. dominated in abundance, representing 62% of all fish captured. Permutational multivariate analysis of variance identified distinct fish assemblages within the bay and during the year. The marine straggler species Harengula clupeola, Oligoplites saliens and Trachinotus carolinus and the estuarine migrant Anchoa tricolor were characteristic of the outer-most bay area, while the estuarine resident and migrant species Atherinella brasiliensis, Anchoa januaria, Sphoeroides greeleyi and Citharichthys spilopterus, and the marine migrant Diapterus rhombeus were characteristic of the inner portion of the estuary. The seasonal changes in community structure observed were mainly related to the greater abundance of T. carolinus in the warm/wet season, Micropogonias furnieri in the transition season and Oligoplites saliens in the cold/dry season. Depth, followed by salinity, explained the greater part of the variability in the abundance of dominant species and was found to be important in shaping the assemblages. Nevertheless, the amount of variation unexplained by the measured abiotic variables was relatively high (73%), suggesting the effect of additional regulatory factors. Many fish species use the shallow waters of the bay in transitory or permanent ways, and knowledge about their relationship with the environment is necessary for the success of conservation strategies for this ecosystem.

In the context of the limited information on the ecology of port communities, the present work aims at assessing the small-scale spatial variability of zoobenthos inhabiting hard and soft substrata, in a Mediterranean port with high levels of commercial shipment. Samples were collected in summer from three stations and four depth levels, using core and quadrate samplers. A total of 34,578 individuals were collected, identified to 118 animal species. Soft substratum communities were impoverished and their structure varied spatially according to sediment composition. At a functional level deposit feeders dominated; their abundance decreased at the silty sites. Biotic indices were found inadequate for the assessment of ecological quality, due to the very low abundance of the fauna. Fouling communities varied spatially in vertical scales; diversity indices and the abundance of Bivalvia varied also in horizontal scales. Suspension and deposit feeders dominated showing a decreasing trend with depth. Two animal-dominated communities, serpulid blocks in the lower midlittoral zone and mussel beds in the sublittoral, substituted an algal-dominated community, which has been previously recorded from the same port quays. This substitution may be due to the intensive mussel farming in the nearby area contributing to the rapid expansion of mussels and of their serpulid biofoulers. Despite the existence of biogenic substrata, which enhance habitat complexity, the diversity of the associated fauna decreased and most species were tolerant to organic pollution. Recursive biomonitoring seems necessary to assess the ecological status of communities and to develop integrated management plans for temperate ports.

Settlement is one of the critical points in the development of organisms with complex life cycles. Some marine invertebrates respond to specific cues such as substratum and conspecifics, and the larvae of species presenting gregarious settlement are characterized by a preference for settlement in patches with conspecifics over those without. An evaluation was made in the field of the effect of conspecifics density on the settlement of Petrolisthes laevigatus during two settlement seasons. The size-distribution and density were maintained constant throughout the first settlement season, while in the second year they were adjusted to match those presented in three previously identified periods during the season. The settlement rate of P. laevigatus was higher in the presence than the absence of conspecifics. There was evidence of saturation in the settlement of the higher densities, mainly at the beginning of the settlement season, when approximately 80% of the settlement occurred. We propose that gregarious settlement is an important factor in determining the distribution and abundance of P. laevigatus at different spatial scales, both within and among coastal areas, and could restrict the colonization of new areas and the recovery of populations reduced by disturbances.

In 1996 a sponge was found in a well studied area in the Ria of Etel, Brittany, France, that had never been recorded there before. This sponge was later described as a new species and genus, Celtodoryx girardae by Perez et al. (2006), who concluded that it is probably an invasive species. Over several years C. girardae was found to occur successively in the Gulf of Morbihan, France, and Oosterschelde estuary, Netherlands. This sponge is characterized by an extensive spatial broading and therewith it rates today among the dominant benthic megafauna in the shallow waters of the Gulf of Morbihan and Dutch inshore waters. During our recent survey of the Chinese Yellow Sea sponge fauna, we found an abundant species with close morphological similarities to C. girardae. Further taxonomic studies have revealed that both the Chinese and European sponges are in fact conspecific with Cornulum ciocalyptoides described by Burton (1935) from Posiet Bay, Sea of Japan and later recorded from other localities of the North West Pacific (e.g. Koltun, 1971; Sim & Byeon, 1989). In this paper we transfer the species of Burton from Cornulum to Celtodoryx and consequently it becomes the senior synonym of C. girardae. Furthermore, we conclude that Celtodoryx ciocalyptoides was introduced to the North East Atlantic from the North West Pacific with aquaculture of the Pacific oyster Crassostrea gigas as the probable vector. This is probably the first case recorded so far of a sponge species being transferred from one ocean to another by human activity.

A new record of Crambionella stuhlmanni is reported from the east coast of South Africa. The material is described using quantitative morphological data, and mitochondrial (CO1) and nuclear (ITS-1) sequence data. The species can be diagnosed by a combination of morphological features including the presence of conical projections on velar lappets, the absence of orbicular appendages among mouthlets and the short length of the terminal club on the oral arm. Mitochondrial sequence data unambiguously delineate C. stuhlmanni as a separate species from C. orsini, and phylogenetic analyses support its placement within the monophyletic genus, Crambionella.

This study of the little known north-eastern Atlantic mytilid Modiolarca subpicta suggests a more intimate relationship with ascidians and, especially, Ascidiella aspersa, than has hitherto been appreciated. Both live for ~18 months and the reproductive cycle of both is approximately co-ordinated so that juvenile ascidians become available as hosts to the settling spat of the symbiotically epizoic M. subpicta each summer. Settling spat of M. subpicta are thought to be attracted to the exhalant flow from the ascidian's anal siphon. After the ascidian's death, the liberated mussels may adopt a wandering, free-living, lifestyle they have occasionally been reported to pursue. Anatomically, M. subpicta is of the typical mytilid plan, albeit simplified commensurate upon its normal lifestyle of protective envelopment within the host's tunic. The foot, however, is highly mobile and in addition to being used for locomotion, especially in juveniles, is responsible for the planting of byssal threads, typically dorsally above the shell, so that each individual stimulates the ascidian to produce an epidermal pocket into which it manœuvres itself and reposes, securely attached, but dorsal side down Modiolarca subpicta, epizoic in the tests of ascidians, could have evolved from a more isomyarian, equivalve, ancestor via a nestling, epibyssate, Trichomusculus-like shaped intermediary with ventral flattening and, hence, stability characteristic of the more familiar heteromyarian mytilids of rocky shores and lotic freshwaters being achieved through living dorsal side down.

Corals live in close association with bacterial communities, but the nature of the relationship is still poorly understood. In this study, three scleractinian coral species, Galaxea fascicularis, Pavona cactus and Turbinaria reniformis were incubated under different laboratory conditions, and the composition of the bacterial community associated with their tissue or skeleton was compared between species or between species and seawater using denaturing gradient gel electrophoresis (DGGE). The amount of dissolved organic carbon (DOC) excreted and the mucus glycoconjugate composition were also determined for each species. The aim of the study was to assess if the bacterial community composition was species-specific or linked either to the seawater composition, or to the quality and quantity of carbon released by each coral. Results obtained showed that DOC release was significantly different (P < 0.0001) for the three species, with the highest excretion rate for G. fascicularis. Also, the mucus of G. fascicularis and P. cactus mainly contained galactose and glucose whereas the mucus of T. reniformis contained more glucose and xylose. Cluster analyses of microbial community composition showed that the bacterial community was species-specific in the coral tissue but not in the skeleton, in all conditions. It remained specific when corals were incubated in the same or in different aquaria, and under different seawater renewal rates. Since DOC release rates and bacterial composition were both different according to the coral species considered, a link might be suggested between the two parameters. Sequencing of DGGE bands indicated that some bacterial phylotypes were consistently retrieved in all samples of a given species.

Taxonomic diversity and temporal patterns in abundance of periphytic ciliate communities across taxonomic levels were studied to monitor water quality in Korean coastal waters during April 2007. Specifically we compared two methods based on an artificial substrate (glass slide): the polyurethane foam enveloped slide (PFES) and the conventional slide (CS) systems. The results demonstrated that: (1) the colonization patterns of the ciliate communities at all taxonomic levels showed a lower variability in the PFES system than those of the CS system; (2) The taxonomic diversity (Δ) and taxonomic distinctness (Δ*) were significantly higher in the PFES system than those in the CS system; and (3) all four taxonomic diversity/distinctness indices represented lower variability in the PFES system than those of the CS samples. These findings suggest that the PFES system is more effective than the CS system for measuring the colonization patterns and taxonomic distinctness parameters that are increasingly used as potential indicators of water quality. This conclusion supports our previous suggestion that the PFES system is a better tool than the CS system for monitoring water quality in the marine ecosystem, using periphytic ciliates.