Fresh fruits and vegetables have a short post-harvest life and are prone to post-harvest losses due to mechanical injury, physiological causes and decay. Low-temperature storage is widely used as post-harvest treatment applied for delaying senescence in vegetables and ornamentals and ripening in fruits, upholding their post-harvest quality. But the refrigerated storage of tropical and subtropical crop plant species provokes a set of physiological alterations known as chilling injury that negatively affect their quality and frequently renders the product not saleable. Membrane damage and reactive oxygen species (ROS) accumulation are the main adverse effects of chilling injury impact in sensitive horticultural products. The chilling injury tolerance of certain plant species is attributed to their ability to accumulate heat-shock proteins (HSP). The beneficial action of HSP in chilling tolerance is due to their chaperone activity but, besides this biological function, small HSP (sHSP) are able to function as membrane stabilizers and ROS scavengers, or synergistically with cell antioxidant systems. Also, biosynthesis of osmolytes such as raffinose and proline is under the regulation of heat-shock transcription factors (HSTF). These molecules are critical for osmotic adjustment since low temperatures also provoke a secondary osmotic stress. The use of biotechnological strategies can be envisaged, with the aim of generating engineered crop plants of horticultural interest to induce the production and action of HSP and HSTF, in order to assure the beneficial effects of these proteins in promoting chilling injury tolerance during their post-harvest refrigerated storage. In particular, induction of HSTF expression using biotechnology has significant potential and interest for reducing the impact of chilling injury on sensitive produce, avoiding the practical difficulties of applying the classic post-harvest technologies based on heat treatment.

The fertilizer-nitrogen (N) requirement for wheat grown in the UK varies from field to field. Differences in the soil type, climate and cropping history result in differences in (i) the crops’ demands for N, (ii) the supply of N from the soil (SNS) and (iii) the recovery of the fertilizer by the crops. These three components generally form the basis of systems for N recommendation. Three field experiments were set out to investigate the variation of the N requirement for wheat within fields and to explore the importance of variation in the crops’ demands for N, SNS and fertilizer recovery in explaining the differences in the economic optima for N. The N optima were found to vary by >100 kg N/ha at two of the sites. At the other site, the yield response to N was small. Yields at the optimum rate of N varied spatially by c. 4 t/ha at each site. Soil N supply, which was estimated by the unfertilized crops’ harvested N, varied spatially by 120, 75 and 60 kg/ha in the three experiments. Fertilizer recovery varied spatially from 30% to >100% at each of the sites. There were clear relationships between the SNS and the N optima at all the three sites. The expected relationship between the crop's demand for N and N optima was evident at only one of the three sites. There was no consistent relationship between the N recovery and the N optima. A consistent relationship emerged, however, between the optimal yield and SNS; areas with a greater yield potential tending to also supply more N from the soil. This moderated the expected effect of the SNS and the crop's demand for N on the N optima.

The aim of the present study was to evaluate the effects on yield, oil concentration and nitrogen (N) uptake efficiency of N fertilizer applied to the foliage of oilseed rape during and soon after flowering. Four field experiments were conducted in the UK during the 2008/09 and 2009/10 seasons which investigated six rates of soil-applied N (ammonium nitrate) ranging from 0 to 280 or 320 kg N/ha with each treatment followed by 0 or 40 kg/ha of foliar N applied as a solution of urea at the end of flowering. Each experiment also investigated five rates of foliar N ranging from 0 to 120 kg N/ha applied at the end of flowering and five timings of foliar N (40 kg N/ha) from mid-flowering to 2 weeks after the end of flowering.

Foliar N at 40 kg N/ha applied at the end of flowering significantly increased the seed yield in three of the four experiments. The seed yield increase across all four experiments was 0·25 t/ha (range of 0–0·41 t/ha). In two experiments, the increase in seed yield in response to foliar N occurred irrespective of whether it followed sub-optimal or super-optimal rates of soil-applied N; in one experiment there was a greater response at sub-optimal soil-applied N rates. The foliar N treatment reduced the seed oil concentration by 11 g/kg and increased seed protein concentration by 11 g/kg. Similar yield responses were observed for foliar N applications between mid-flowering and 2 weeks after the end of flowering. The efficiency with which foliar N was taken up into the plant varied between 0 and 100% with an average uptake efficiency across the four experiments of 61%.

The extent to which markers have been used in chickpea breeding programmes has not been clearly determined. In the current study, phenotypic and marker-assisted selection (MAS) were employed to select blight resistant genotypes, comparing the effectiveness of both methods. The phenotypic evaluation showed that the resistance could be recessive in the material employed. However, the high distorted segregation towards the susceptible parent detected on linkage group four (LG4) could also explain the phenotype distribution of resistance. Phenotypic selection in F2:4 and F2:5 generations lead to an increase in the frequency of the allele associated with the resistance of the markers CaETR and GAA47, indicating the usefulness of these markers for MAS. The markers TA72 and SCY17 could be also useful for MAS but the high distorted segregation towards the susceptible parent in the region where these markers are located could explain their low effectiveness. The costs associated with phenotypic selection and MAS for ascochyta blight resistance during three cycles of selection are presented in the current study, showing that MAS was more expensive than phenotypic selection. Nevertheless, the use of markers reduced the time taken to select resistant lines. The markers analysed in the current study were useful to select genotypes resistant to ascochyta blight in chickpea breeding programmes, allowing pyramiding genes or quantitative trait loci (QTL) related to different pathotypes. It is recommended that MAS should be employed in early generations of chickpea breeding programmes for the four QTL analysed because this makes it possible to develop populations with a high frequency of the favourable alleles conferring resistance to blight.

Modern agriculture is based on the control of in-field variability, which is determined by the interactions of numerous factors such as soil, climate and crop. For this reason, the use of remote sensing is becoming increasingly important, thanks to the technological development of satellites able to supply information with high spatial resolution and revisit frequency. Despite the large number of studies on the use of remote sensing for crop monitoring, very few have addressed the problem of spatial variability at field scale or the early prediction of crop yield and grain quality. The aim of the current research was to assess the potential use of high resolution satellite imagery for monitoring durum wheat growth and development, addressing forecast grain yield and protein content, through vegetation indices at two stages of crop development. To best represent the natural variability of agricultural production, the study was conducted in wheat fields managed by local farmers. As regards dry weight, leaf area index and nitrogen (N) content, the possibility of describing the crop state is evident at stem elongation, while at anthesis this potential is completely lost. However, satellites seem to be unable to estimate the N concentration. Aboveground biomass accumulated from emergence to stem elongation is strictly related to the final yield, while it has been confirmed that the crop parameters observed at anthesis are less informative, despite approaching harvesting time.

Tomato leaf curl virus (TLCV) is a major viral disease in tomato that causes quantitative and qualitative losses to the crop. One hundred and fifty three tomato genotypes were screened for three consecutive years (2006–09) under glasshouse and field conditions for TLCV resistance. The incidence of disease was higher during the Rabi season as compared to the Kharif season trials. The reactions of different genotypes were studied by artificial inoculation. Based on the coefficient of infection, nine genotypes (viz. EC-520049 (Solanum chmielewskii), EC-520058, EC-520060 and EC-520061 (S. habrochaites), EC-520070, EC-520071, EC-520077, EC-520079 (S. pimpinellifolium) and H-88-78-1(S. lycopersicum; a derivative of S. habrochaites f. glabratum) were found to be highly resistant in both environments. H-88-78-1 was used for inheritance studies during 2008–10. Using F2 Mendelian segregation, populations showed a 3 (resistant):1 (susceptible) ratio for TLCV disease and were proposed to have both additive and dominant non-allelic gene interactions for various traits.

Productivity and water resource usage efficiency are crucial issues in sustainable agriculture. The aims of the present research were to compare and evaluate the soil moisture content (SMC), evapotranspiration (ETa), yield, water-use efficiency (WUE), and net return of winter wheat (Triticum aestivum L.) and soybean [Glycine max (L.) Merr.] under different plant population distribution patterns and to identify the possible ways to improve water utilization. Using the same plant population for a given crop, the experiments consisted of four spacings between rows (row spacings) for winter wheat (cvar Shannong 919) under both rainfed and irrigated conditions and five row spacings for summer soybean (cvar Ludou 4) under rainfed conditions. For winter wheat, the stem number with row spacing of 49 cm was the lowest in all treatments. The SMC was enhanced by irrigation, particularly at the 10–40 cm depth. The yield and WUE were negatively correlated with row spacing and were greater with narrower row spacing than with wider rows. For soybean, SMC in uniform distribution (spacing between plants) treatments was greater at lower depths than at shallower depths for each row spacing treatment. A high yield, WUE and net return of winter wheat and soybean can be achieved with narrower row spacing. Combining winter wheat row spacing of 14 cm with soybean row spacing of 18 cm and soybean row spacing of 27 cm is a highly suitable planting system for the plains of Northern China.

The morphological (using International Union for the Protection of New Varieties of Plants (UPOV) descriptors) and field performance of five clones selected from the globe artichoke landrace Spinoso di Palermo were determined over two seasons, and their amplified fragment length polymorphism (AFLP) profiles detected using seven primer combinations (PCs). The number of heads produced averaged 13·8 per plant (equivalent to a fresh weight yield of 2·1 kg/plant), but two of the clones produced 15·6 heads per plant (2·4 kg/plant). Three clones produced noticeably larger second-order heads (mean of 156 g), and so were considered to be suitable for the production of desirable heads over a prolonged harvesting period. Head yield and the number of heads per plant were associated with a moderate level of broad sense heritability (0·29–0·46), implying that these traits could be viewed as primary selection criteria. From the list of 51 UPOV descriptors, 18 varied among the five clones, but variation at just six, simply scored, descriptors was sufficient to discriminate completely between the examined clones. Full discrimination was also achieved by applying only three of the seven selected AFLP PCs. According to the AFLP profiles, two of the clones were highly similar. The similarity matrices calculated from the UPOV descriptors and the AFLP profiles were highly correlated with one another. The data are optimistic and indicate that the performance of Spinoso di Palermo could be much improved via clonal selection.

A mechanistic model (COWPOLL) was used to estimate enteric methane (CH4) emissions from beef production systems in Chile. The results expressed as a proportion of gross energy intake (GEI) were compared with enteric fermentation data reported in the last Chilean greenhouse gases inventory, which utilized an earlier the Intergovernmental Panel on Climate Change Tier 2 approach. The simulation analysis was based on information from feedstuffs, dry matter intake (DMI), body weight (BW) and average daily gain (ADG) of steers raised and finished at two research facilities located in Central and Southern Chile, as well as three simulated scenarios for grass-based finishing systems in Southern Chile. Data for feedlot production systems in the central region were assessed by considering steers fed a forage : concentrate ratio of 23 : 77 using maize silage and wheat straw as roughage sources during the stages of backgrounding and fattening. Average DMI were 7·3±0·62 and 9·2±0·55 kg/day per steer for backgrounding and fattening, respectively, whereas ADG were 1·1±0·22 and 1·3±0·37 kg/day for backgrounding and fattening. For the Southern Chilean fattening production systems, the forage : concentrate ratio was 56 : 44 with ryegrass pasture as the sole forage source. In this case, average DMI was 9·97±0·51 and ADG was 1·1±0·24 kg/day per steer. Two of the grass-based scenarios used the same initial BW information as that used for the Central and Southern Chilean systems, but feedlot diets were replaced by ryegrass pasture. The third grass-based scenario used an initial BW of 390 kg. In all the grass-based scenarios an ADG of 0·90 kg/day, with maximum DMI estimated as a proportion of BW (0·01 of NDF, kg/kg BW), was assumed. The results of the simulation analysis showed that emission factors (Ym; fraction of GEI) ranged from 0·062 to 0·079 of GEI. Smaller values were associated with finishing systems that included a lower proportion of forage in the diet due to higher propionate production, which serves as a sink for hydrogen in the rumen. Cattle finished in feedlot systems had an average of 0·062 of GEI lost as CH4, whereas grass-based cattle had losses of 0·079 of GEI. Enteric CH4 emissions for the systems using grass-based and concentrate diets were 261 and 159 g/kg weight gain, respectively. The Chilean CH4 inventory employs a fixed Ym of 0·060 to estimate enteric fermentation for all cattle. This value is lower than the average Ym obtained in the current simulation analysis (0·071 of GEI), which results in underestimation of enteric CH4 emissions from beef cattle. However, these results need to be checked against field measurements of CH4 emissions. Implementation of mechanistic models in the preparation of national greenhouse gas inventories is feasible if appropriate information is provided, allowing dietary characteristics and regional particularities to be taken into consideration.

Chicory (Cichorium intybus L.) crops can increase milk production on New Zealand dairy farms through providing high-quality feed in late lactation. Non-linear optimization models of three Waikato dairy farms, differing in the degree to which imported supplement is used, were employed to evaluate chicory crops in this environment. At a baseline milk price of $NZ 7/kg milk solids, it was only profitable for chicory to be used on a farm where no imported supplement was fed. However, even then, only 0·04 of the farm area was planted and profit only increased by $NZ 30/ha (0·006 of baseline profit), relative to where it was not used. It was not optimal to plant any chicory on farms where imported feed was available, at the baseline milk price and cost of establishment considered here. This was evident because imported feed is more flexible than chicory for filling temporary feed gaps; also its use does not displace pasture production. Sensitivity analysis indicated that the unprofitability of chicory is robust to broad variation in calving date and the relative growth of chicory and pasture. Overall, results indicate that farmers are unlikely to receive adequate reward for the additional complexity arising from the utilization of chicory crops, especially when imported supplement provides more flexibility.

The aim of the present study was to compare the effect of changing a range of biological traits on farm profit and greenhouse gas (GHG) emissions (expressed as carbon dioxide equivalent, CO2-eq.) in the UK dairy cow population. A Markov chain approach was used to describe the steady-state herd structure of the average milk-recorded UK dairy herd, as well as to estimate the CO2-eq. emissions per cow, and per kilogram of milk solids (MS). Effects of changing each herd production and fitness trait by one unit (e.g. 1 kg milk; 1% mastitis incidence) were assessed, with derived values for change in profit (economic values) being used in a multi-trait selection index. Of the traits studied, an increase in survival and reductions in milk volume, live weight, residual feed intake, somatic cell count, mastitis incidence, lameness incidence and calving interval were traits that would be both profitable and reduce CO2-eq. emissions per cow and per kg MS of a dairy herd. A multi-trait selection index was used to estimate the annual response in production and fitness traits and the economic response, with an estimate of annual profit per cow from selection on multiple traits. Milk volume, milk fat and protein yield, live weight, survival and dry matter intake were estimated to increase each year and body condition score, residual feed intake, somatic cell count, mastitis incidence, lameness incidence and calving interval were estimated to decrease, with selection on these traits estimated to result in an annual increase of 1% per year in GHG emissions per cow, but a reduction of 0·9% per unit product. Improved efficiencies of production associated with a reduction in milk volume (and increasing fat and protein content), live weight and feed intake (gross and metabolic efficiency, respectively), and increase in health, fertility and overall survival will increase farm annual profit of UK dairy systems and reduce their environmental impact.

Focusing on cattle (Bos taurus, Bos indicus), the present paper discusses the concept of the breed in the context of the dynamic history of livestock domestication. A breed categorization is proposed on the basis of how the breeds came into existence. The online Appendix (available at http://journals.cambridge.org/AGS) presents a survey of the cattle breeds of the world consisting of: (1) a list of breeds per country and then subdivided according to the proposed categories; (2) a list of breed names, including synonyms and translations, ordered according to a comprehensive breed classification; and (3) an alphabetical list of these names. The commonly accepted perceptions of breeds and how these are influenced by the nomenclature are described. Considering the history of breeds, it is argued that conservation of genetic diversity does not necessarily imply conservation of breeds. However, breeds are instrumental for the conservation of genetic diversity as independent genetic management units. These considerations may very well be extrapolated to other domestic species.

Moulds belonging to Penicillium section roqueforti are common contaminants of feedstuffs and produce several mycotoxins that can cause health hazards when ingested by farm animals. Among these, PR toxin (PR), mycophenolic acid (MY) and roquefortine C (RC) have been frequently detected in forages, particularly silages. The aims of the current trials were to study the effects of the presence of pure mycotoxins on in vitro rumen fermentation parameters and to assess their stability in the rumen environment. Two successive in vitro gas production experiments were carried out: a central composite design with four replications of central point (CCD) and a completely randomized design with a fully factorial arrangement of treatments (FFD). In CCD, the effects of PR, MY and RC concentrations in diluted rumen fluid (i.e. 0·01, 0·30, 1·01, 1·71 and 2·00 μg of each mycotoxin/ml) were tested. Gas volume produced after 48 h of incubation (Vf) decreased linearly as concentrations of RC and MY in diluted rumen fluid increased, with marginal effects similar for two mycotoxins, being respectively −14·6 and −13·4 ml/g organic matter (OM) for each 1·0 μg/ml of increment in mycotoxin concentration. Similarly, total volatile fatty acid (VFA) production decreased quadratically as concentrations of RC and MY increased, with marginal effects about two times higher for MY than RC, being −4·22 and −2·62 mmol/l for each 1·0 μg/ml of increment in mycotoxin concentration. With respect to maximum Vf (i.e. 410·6 ml/g OM) and VFA (98·06 mmol/l) values estimated by the model, decreases of 13·6 and 15·2% were obtained when incubating the highest RC and MY concentrations, respectively. The PR did not interfere with rumen fermentation pattern and it was not recovered after 48 h of incubation, whereas the stabilities of MY and RC in rumen fluid were similar and on average equal to about 50%. On the basis of CCD results, a second experiment (FFD) was carried out in which only effects of MY and RC concentrations (i.e. 0, 0·67, 1·33 and 2·00 μg of each mycotoxin/ml of diluted rumen fluid) were tested. Data from FFD showed Vf decreased linearly when concentrations of MY and RC increased, with marginal effect two-folds higher for MY than for RC (−11·1 ml/g OM and −6·7 ml/g OM, respectively). Similar marginal effects of MY and RC in decreasing VFA production were recorded: −2·38 and −2·86 mmol/l for each 1·0 μg/ml of increment in mycotoxin concentration, respectively. At the highest RC and MY tested concentrations, Vf and VFA decreased by 8·7 and 10·7%, respectively, over maximum estimated values. In FFD, the average amounts of MY and RC recovered in rumen fluid after 48 h of incubation were 79·0 and 40·6%, respectively. In conclusion, the MY and RC from standards interfered with rumen microorganisms at relatively low levels and were partially stable in the rumen environment after 48 h of incubation. These findings suggested that MY and RC could interfere with digestive processes and might represent a potential risk for ruminants fed diets containing feeds contaminated by mycotoxins produced by P. roqueforti.

Animal slurry is separated in order to avoid excessive nitrogen, phosphorus and potassium (NPK) fertilization of crops in the field. To enhance fertilizer efficiency further, slurry and its separation products may be acidified, for instance in animal houses. The current study quantified the effects of these treatments, both individually and in combination, on fertilizer efficiency, energy production and heavy metal accumulation as a result of manure management. Acidification increased the availability of N to plants in the manure applied, and provided a better match between plant-available NPK in the manure and separation fraction applied to fields and crop need. Total biogas production was not affected by separation, whereas acidification reduced biogas production because the process was inhibited by a low pH and a high sulphur concentration. The amount of copper applied per hectare in the liquid manure to the wheat field was lower than the amount taken up and more zink and copper was applied in the solid fraction to maize field than taken up. The transportation and field application of solids and liquids did not increase management costs when compared to the transportation of slurry alone, but the investment and running costs of separators and manure acidification increased overall management costs.