The seeds of most Australian acacias have pronounced physical dormancy (PY). While fire and hot water (HW) treatments cause the lens to ‘pop’ almost instantaneously, for many Acacia species the increase in germination percentage can be gradual. If PY is broken instantly by HW treatment, why is germination often an extended process? Control and HW treatments were performed on seeds of 48 species of Acacia. Seeds were placed on a moist substrate and imbibition was assessed by frequently weighing individual seeds. In the two soft-seeded species all control seeds were fully imbibed within 6–24 h, while in hard-seeded species very few control seeds imbibed over several weeks. In 10 species over 50% of the HW-treated seeds imbibed within 30 h, but mostly the percentage of imbibed seeds gradually increased over several weeks. Some seeds in a replicate would imbibe early, while others would remain unimbibed for many days or weeks then, remarkably, become fully imbibed in less than 24 h. While HW treatment broke PY almost instantaneously, it appeared that in many Acacia species some other part of the testa slowed water from reaching the embryo. This process of having staggered imbibition may be a way of ensuring not all seeds in a population germinate after small rain events. Thus it appears the lens acts as a ‘fire gauge’ while some other part of the seed coat acts as a ‘rain gauge’.

Drought and high temperature each damage rice (Oryza sativa L.) crops. Their effect during seed development and maturation on subsequent seed quality development was investigated in Japonica (cv. Gleva) and Indica (cv. Aeron 1) plants grown in controlled environments subjected to drought (irrigation ended) and/or brief high temperature (HT; 3 days at 40/30°C). Ending irrigation early in cv. Gleva (7 or 14 days after anthesis, DAA) resulted in earlier plant senescence, more rapid decline in seed moisture content, more rapid seed quality development initially, but substantial decline later in planta in the ability of seeds to germinate normally. Subsequent seed storage longevity amongst later harvests was greatest with no drought because with drought it declined from 16 or 22 DAA onwards in planta, 9 or 8 days after irrigation ended, respectively. Later drought (14 or 28 DAA) also reduced seed longevity at harvest maturity (42 DAA). Well-irrigated plants provided poorer longevity the earlier during seed development they were exposed to HT (greatest at anthesis and histodifferentiation; no effect during seed maturation). Combining drought and HT damaged seed quality more than each stress alone, and more so in the Japonica cv. Gleva than the Indica cv. Aeron 1. Overall, the earlier plant drought occurred the greater the damage to subsequent seed quality; seed quality was most vulnerable to damage from plant drought and HT at anthesis and histodifferentiation; and seed quality of the Indica rice was more resilient to damage from these stresses than the Japonica.

The long-standing hypothesis that seed quality improves during seed filling, is greatest at the end of seed filling, and declines thereafter (because seed deterioration was assumed to begin then), provided a template for research in seed quality development. It was rejected by investigations where seed quality was shown to improve throughout both seed development and maturation until harvest maturity, before seed deterioration was first observed. Several other temporal patterns of seed quality development and decline have also been reported. These are portrayed and compared. The assessment suggests that the original hypothesis was too simple, because it combined several component hypotheses: (a) the seed improvement (only) phase ends before seed deterioration (only) commences; (b) there is only a brief single point in time during seed development and maturation when, in all circumstances, seed quality is maximal; (c) the seed quality improvement phase coincides perfectly with seed filling, with deterioration only post-seed filling. It is concluded that the search for the single point of maximum seed quality was a false quest because (a) seed improvement and deterioration may cycle (sequentially if not simultaneously) during seed development and maturation; (b) the relative sensitivity of the rates of improvement and deterioration to environment may differ; (c) the period of maximum quality may be brief or extended. Hence, when maximum quality is first attained, and for how long it is maintained, during seed development and maturation varies with genotype and environment. This is pertinent to quality seed production in current and future climates as it will be affected by climate change and a likelihood of more frequent coincidence of brief periods of extreme temperatures with highly sensitive phases of seed development and maturation. This is a possible tipping point for food security and for ecological diversity.

The proteins produced just prior to maturation desiccation in the developing, orthodox seed, are stored in the desiccated state and recruited as the functional proteome upon imbibition. For the resumption of protein function, these stored proteins must be protected from permanent denaturation while dehydrating, throughout desiccation, and during rehydration. For some forms of damage there is the possibility of repair following imbibition potentially coordinated with de-aggregation into monodispersed polypeptides capable of refolding into a functional configuration. While studying aspects of the natural protection and repair mechanism in seeds, evidence has accrued that those proteins directly involved in translation are particular targets of both protection and protein repair. Such a phenomenon was first described by Rajjou et al. (2008) examining the frequency with which proteins involved in translation were identified as differentially abundant between aged and un-aged Arabidopsis seeds and the translational competence of aged versus un-aged seeds. The inference drawn from these observations was that, of all the stored proteins, it is imperative that those involved in translation endure desiccation, quiescence and rehydration in a functional state if the seed is to survive. Proteins involved in any other process other than translation can be replaced from the stored transcriptome or by de novo transcription but no mRNA is of value without the translational machinery. This has become known as ‘Job's rule’ in honour of the laboratory from which this hypothesis was first put forward (Rajjou et al., 2008). We review in this manuscript the evidence accrued to date on which Job's rule is based.

The objective of this study was to evaluate the effect of day length after flowering on pollen tube elongation, embryo formation and seed development. The quinoa varieties used in this study were Amarilla de Marangani (valley type) and NL-6 (sea-level type). After sowing, the quinoa plants were cultivated in growth cabinets. From sowing to flowering, plants were exposed to a 15 h day length regime. After flowering, the plants were grown under either a 15 h or 11 h day length regime. The elongation of the pollen tube and the formation of the early embryo were not inhibited in either Amarilla de Marangani or NL-6 under the 11 or 15 h day length regimes. Although growth of the embryo in NL-6 was not inhibited by the 15 h day length regime after flowering, the same was not observed in the case for Amarilla de Marangani. In Amarilla de Marangani, seed diameter at 8 and 14 days after flowering under the 11 h day length regime was larger than that of seeds grown under the 15 h day length regime. Thus, the decrease in the number of seeds in Amarilla de Marangani grown under the 15 h day length regime may be caused by the suspension of embryo growth after fertilization.

Rapid, non-destructive methods for measuring seed germination and vigour are valuable. Standard germination and seed vigour were determined using 81 soybean seed lots. From these data, seed lots were separated into high and low germinating seed lots as well as high, medium and low vigour seed lots. Near-infrared spectra (950–1650 nm) were collected for training and validation samples for each seed category and used to create partial least squares (PLS) prediction models. For both germination and vigour, qualitative models provided better discrimination of high and low performing seed lots compared with quantitative models. The qualitative germination prediction models correctly identified low and high germination seed lots with an accuracy between 85.7 and 89.7%. For seed vigour, qualitative predictions for the 3-category (low, medium and high vigour) models could not adequately separate high and medium vigour seeds. However, the 2-category (low, medium plus high vigour) prediction models could correctly identify low vigour seed lots between 80 and 100% and the medium plus high vigour seed lots between 96.3 and 96.6%. To our knowledge, the current study is the first to provide near-infrared spectroscopy (NIRS)-based predictive models using agronomically meaningful cut-offs for standard germination and vigour on a commercial scale using over 80 seed lots.

Obtaining corn hybrid seeds (Zea mays L.) with high vigour depends on the parental lines and the direction of the cross, and this relates to seed desiccation tolerance and composition. This research studied reciprocal crosses between pairs of proprietary, elite parent lines (L1 and L5; L2 and L4) producing hybrid seeds with different qualities attempting to correlate vigour with seed composition, focusing on storage proteins, starch and soluble sugar amounts. Four corn hybrid seed lots produced from reciprocal crosses were compared (HS 15 with HS 51, and HS 24 with HS 42) by assessing germination, vigour, and seedling emergence in the field. Seed composition was assessed in mature, dehydrated seeds. Proteins were extracted, quantified, and analysed by electrophoresis and densitometry. Starch amounts were assessed using a kit and soluble sugars were determined using high performance liquid chromatography with pulsed electrochemical detection. The L1 and L2 lineages, used as female parents, provided seeds with lower vigour; however, the quantification of major protein bands, and sucrose, raffinose and stachyose were similar between seed lot pairs. While both total seed protein and starch varied between reciprocal hybrids for one of the two sets of crosses, the amounts of neither correlated with seed vigour. Interestingly, hybrids with low seed vigour (HS 15, HS 24) accumulated greater amounts of fructose relative to their reciprocal; correlation analysis confirmed these results. We demonstrate different effects on seed vigour dependent on the maternal parent in reciprocal crosses producing hybrid corn seeds. We also show that vigour is negatively correlated with seed reducing sugar contents.

Endozoochorous dispersal of seeds by livestock has long attracted the attention of grassland scientists. However, little is known about seed dispersal after ingestion by Kazakh sheep on dry grasslands in the Tianshan Mountains. The objective of this experiment was to learn more about the recovery and germinability of seeds from 17 plant species after either actual or simulated ingestion (i.e. insertion through a rumen fistula) by Kazakh sheep. The passage time of seeds through the sheep gut ranged from 12 to 96 h. More than 80% of all recovered seeds were defecated 24–48 h after ingestion. The mean retention time of seeds in the gut ranged from 27.3 to 42.2 h. Seed recovery percentage ranged between 12.6 and 17.6% for leguminous species and between 0.8 and 3.2% for gramineous species. Seed recovery percentage was positively correlated with seed mass, but negatively correlated with seed shape. The germination percentages of the gramineous species were greater in the non-ingested treatment (66–98%) than in the simulated ingestion treatment (3–10%). In contrast, for leguminous species, seed germination percentages were greater in the simulated ingestion treatment (23–70%) than in the non-ingested one (5–12%). Seed germination percentage after simulated ingestion was positively correlated with seed mass, but negatively correlated with seed shape. In conclusion, leguminous seeds were more likely than gramineous ones to pass through the gut of Kazakh sheep and then germinate. Free-ranging Kazakh sheep can contribute to the spread of plant species, especially leguminous species, in the Tianshan Mountains.

Group-testing regression methods are effective for estimating and classifying binary responses and can substantially reduce the number of required diagnostic tests. However, there is no appropriate methodology when the sampling process is complex and informative. In these cases, researchers often ignore stratification and weights that can severely bias the estimates of the population parameters. In this paper, we develop group-testing regression models for analysing two-stage surveys with unequal selection probabilities and informative sampling. Weights are incorporated into the likelihood function using the pseudo-likelihood approach. A simulation study demonstrates that the proposed model reduces the bias in estimation considerably compared to other methods that ignore the weights. Finally, we apply the model for estimating the presence of transgenic corn in Mexico and we give the SAS code used for the analysis.

In imbibing seeds, resumption of metabolism leads to the unavoidable release of volatile by-products that are perceived as cues by rodent seed predators. The crypsis hypothesis proposes that the primary function of a water-impermeable, hard seed coat is to reduce rodent seed predation by rendering seeds olfactorily cryptic. In an opinion paper, Jayasuriya et al. (2015) find the crypsis hypothesis unscientific and ‘not consistent with Darwin's theory of evolution by natural selection’. It is unfortunate that Jayasuriya et al. (2015) did not appreciate that the crypsis hypothesis offers an alternative explanation for the evolution of water-impermeable seeds: released seed volatiles are cues used by rodents to locate seeds, and variation in seed-coat permeability leading to differences in seed volatile release represents the variable under selection. Furthermore, the sealing of water-impermeable seed coats imposes a cost of increased generation time and, therefore, dormancy-release mechanisms are expected to subsequently evolve in response to local environmental conditions. We also disagree with most other claims by Jayasuriya et al. (2015), who failed to appreciate how species with dimorphic seeds – one morph with permeable and the other with impermeable seed coats – benefit from rodent caching behaviour and population dynamics. We welcome this opportunity to clarify and elaborate on key features and the evolution of water-impermeable seed coats according to the crypsis hypothesis.

Seeds have evolved to be highly efficient environmental sensors that respond not only to their prevailing environment, but also their environmental history, to regulate dormancy and the initiation of germination. In the present work we investigate the combined impact of a number of environmental signals (temperature, nitrate, light) during seed development on the mother plant, during post-shedding imbibition and during prolonged post-shedding exposure in both dry and imbibed states, simulating time in the soil seed bank. The differing response to these environments was observed in contrasting winter (Cvi, Ler) and summer (Bur) annual Arabidopsis ecotypes. Results presented show that environmental signals both pre- and post-shedding determine the depth of physiological dormancy and therefore the germination response to the ambient environment. The ecotype differences in seed response to ambient germination conditions are greatly enhanced by seed maturation in different environments. Further variation in response develops following shedding when seeds do not receive the full complement of environmental signals required for germination and enter the soil seed bank in either dry or imbibed states. Species seed dormancy characteristics cannot therefore be easily defined, as seed dormancy is a dynamic state subject to within-species adaptation to local environments.

Optimal sample sizes under a budget constraint for estimating a proportion in a two-stage sampling process have been derived using individual testing. However, when group testing is used, these optimal sample sizes are not appropriate. In this study, optimal sample sizes at the cluster and individual levels are derived for group testing. First, optimal allocations of clusters and individuals are obtained under the assumption of equal cluster sizes. Second, we obtain the relative efficiency (RE) of unequal versus equal cluster sizes when estimating the average population proportion, $$\tilde {>\pi } $$ $$ . By multiplying the sample of clusters obtained assuming equal cluster size by the inverse of the RE, we adjust the sample size required in the context of unequal cluster sizes. We also show the adjustments that need to be made to allocate clusters and individuals correctly in order to estimate the required budget and achieve a certain power or precision.

Physical seed dormancy is a common attribute among plants, and a wide range of dormancy-release mechanisms have been described, but their ecological significance is rarely tested through comparative study. This study tests whether dormancy-release responses to wet heat in four legume species with physical dormancy are correlated with habitat: two wetland species (Mimosa pigra and Parkinsonia aculeata, both dispersed primarily by water) and two terrestrial species (Acacia nilotica and Prosopis pallida, both dispersed primarily through vertebrate herbivores). Dormancy release was compared at three moisture levels (80% relative humidity, saturated and submerged) at constant (20–45°C) and diurnally fluctuating (20/40°C) temperatures for 14 d. Seed viability was tested by germinating at 25°C. The functional relationship between temperature and dormancy release after 14 d differed between species: submerged seeds of the two wetland species showed a quadratic response, with low rates of imbibition below 20–25°C and complete imbibition at around 40°C; P. pallida seeds showed a linear positive relationship, whereas there was no temperature response for A. nilotica seeds below 45°C. Surprisingly, dormancy release after 14 d was relatively insensitive to moisture levels, although rate of dormancy release was generally slower under drier conditions. Dormancy release was not influenced by fluctuating temperatures. Seed viability was largely unaffected by temperature or moisture regime, although it did differ with species and was lower for non-dormant seeds. Our results suggest that a functional dormancy-release response to wet heat provides important fitness benefits for wetland species, but not for species dispersed through vertebrate herbivores, for which it may be maladaptive.

Winter rape has a life cycle which necessitates rapid testing of seed quality for the seed production sector, namely between July after harvest of the previous crop and August when the next crop establishment begins. As this crop is the fourth most important crop in France, and the most important oilseed crop, the French seed testing station GEVES has managed several research programmes to study seed quality in this species. These collaborative programmes have not only associated seed science with seed technology but also informatics and electronic engineering to provide seed testing tools that are already used by the seed sector, such as conductivity, or innovative tools, such as germination time courses monitored by computer imaging. Forthcoming tools have also been looked at in order to control seed storage potential, which is often used nowadays to anticipate the next season. Biochemical markers have been studied, including seed-specific biotinylated proteins or enzymes involved in free radical (reactive oxygen species) scavenging, such as catalase. Both are well correlated with seed ageing and have been tested to provide an ELISA-like assay for seed testing laboratories. Germination monitoring by computer imaging is now used by research and breeding institutes to phenotype varying seed material, including genotype or mutant collections, primed or ageing seed lots, etc. The next step in seed quality testing in oilseed rape is to characterize variation in germination and seed vigour in order to stabilize optimal yield. This aim constitutes a new international project involving high-throughput phenotyping and genotyping of a large collection of genetically diverse rapeseed genotypes (double haploid populations or diverse cultivars).