The change of mound structure of the fungus growing termite, Macrotermes gilvus, which has no clear air passage system in the mound, was examined in relation to the mound growth in a rubber plantation of southern Thailand. The nest proper consisted of the hive with a royal chamber and nursery, and diffused chambers with fungus combs. The location of the hive became higher with the growth of the mound. Therefore, colonies with a very large mound utilize only the upper mound part and this may be due to the lack of air passage systems in this species. A colony with a very large mound is not in reality commensurately large in colony size and this may be the reason why the density of huge mounds of M. gilvus in Thailand is much higher than that of Macrotermes in Africa.

Knowledge on cheetah population densities across their current range is limited. Therefore, new and efficient assessment tools are needed to gain more knowledge on species distribution, ecology and behaviour. Scat detection dogs have emerged as an efficient and non-invasive method to monitor elusive and vulnerable animal species, like cheetahs, due to the dog’s superior olfactory system. However, the success of locating scat using detection dogs can be significantly improved under suitable weather conditions. We examined the impact of temperature, humidity and wind speed on detection rates of scat from cheetahs during a scat detection dog survey in Northern Kenya. We found that average wind speed positively influences the scat detection rate of detection dogs working on leash. Humidity showed no significant influence. Temperature showed a strong negative correlation with humidity and thus was excluded from our model analyses. While it is likely that wind speed is especially invalid for dogs working off leash, this study did not demonstrate this. Wind speed could thus influence the success of monitoring cheetahs or other target species. Our findings help to improve the survey and thus maximise the coverage of study area and the collection of target samples of elusive and rare species.

Intraspecific synchrony in the phenology of tropical forest trees has implications for satiation of browsers and seed predators, pollination, dispersal and interpreting plant responses to environmental cues and stresses. Community phenological studies have been constrained in their consideration of these issues by the lack of concise quantitative measures of intraspecific synchrony. We propose a novel application of Colwell's predictability indices to overcome this deficiency. Its application is demonstrated by evaluating the leaf and reproductive phenologies of 8–16 individuals of each of 20 monsoon forest tree species from northern Australia monthly for 30 mo. The indices yielded substantial additional information over that provided by summaries averaged amongst conspecifics. Marked intraspecific asynchronies in leaf flush or flowering occurred in five evergreen species and two deciduous fig species, and were associated with prolonged individual commitments to these states. Five partly deciduous species exhibited marked intraspecific variation in the seasonal extent of leaf loss. We interpret the observed variation in intraspecific synchrony in terms of contrasting water-use and pollination strategies. The synchronicity indices are concise and robust to small and variable sample sizes, and may thus enhance studies of species-rich assemblages.

The functional composition of plant communities in montane regions has been studied for decades, and most recent analyses find that environmentally favourable landscapes at lower altitudes tend to be dominated by species with resource-acquisitive traits, while more resource-conservative taxa dominate higher-altitude communities. However, it is unclear the extent to which this pattern is driven by co-gradient variation within clades or changes in clade representation across the gradient. To test for co-gradient variation, species composition, phylogenetic structure and functional traits were quantified for 97 species within the plant family Melastomataceae at five locations across a 2500-m altitudinal gradient along Volcán Barva in Costa Rica. Average melastome leaf force to punch, specific leaf area and leaf size vary with altitude, while four other functional traits do not. Taxonomic dissimilarity between communities was correlated with altitudinal difference, while phylogenetic dissimilarity was correlated with altitudinal dissimilarity only when measured with a metric that emphasizes shallow turnover of the tips of the phylogeny. These results highlight how species turnover may be more pronounced than functional or phylogenetic variation along altitudinal gradients. In addition, these results highlight the conservation value of lowland tropical forests, which here harbour a disproportionate amount of phylogenetic and functional diversity.

Ant gardens (AGs) are specialized ant-plant associations where arboreal ants build their carton nests in association with epiphytes that use the carton as a substrate. Most of the epiphytes are planted by ants; therefore, seed selection by ants is a key driver of the epiphyte composition of AGs. However, deterministic post-dispersal factors, such as the surrounding environmental conditions and plant succession, may also influence epiphyte composition. Here we ask whether epiphyte composition on a local scale is associated with dispersal constraints, local environmental conditions (light availability, number of branches and nest height) or AG successional stage. We sampled all epiphyte species in 18 AGs formed by Camponotus femoratus and Crematogaster levior in Central Amazon, Brazil. AGs were located within a range of 1 km and at a maximum of 20 m from the edges of a dirt road within a primary forest. Epiphytic composition showed strong spatial structure, decreasing in similarity with increasing distance. Environmental conditions and AG successional stage were not related to AG floristic composition, suggesting a key role of stochastic processes related to seed dispersal. A combination of seed abundance and attractiveness in neighbouring AGs seems to drive the higher similarity in epiphyte composition among closer AGs.

Habitat fragmentation may lead to spatial genetic structuring of plant populations, but the magnitude of this effect differs among species. In this study, the effects of fragmentation on spatial genetic structure of Manilkara maxima, an ecologically important tree species endemic to the Atlantic forest of southern Bahia, Brazil, were examined. To address this issue, 222 individuals were sampled across two large-forest sites (200 and 400 ha) and one site comprising eight small fragments (5, 10 and 25 ha) roughly 35 y old. Five microsatellite loci were used. In general, M. maxima exhibited limited genetic structuring within and across the sites examined. At the landscape scale, genetic structure was not shaped by isolation by distance. Within individual sites, weak to moderate genetic structure was observed for both adults and saplings, which represented pre- and post-fragmentation, respectively. Sapling genetic structure did not clearly vary among the study sites, suggesting fragmentation has not affected spatial genetic structure. High levels of migration were observed, which would help maintain genetic connectivity. Taken together, these results suggest M. maxima, a long-lived tree that naturally occurs in low densities, may have limited spatial genetic structuring both within and across forest patches.

Both decreases in compositional similarity with increasing geographic distances between sites (i.e. distance–decay relationship) and vertical stratification of species composition are key issues in ecology. However, the intersection between these two trends has scarcely been investigated. Here we use identical sampling methods in the canopy and at ground level in a tropical rainforest remnant on the coast of the Gulf of Mexico to evaluate, for the first time, a distance–decay relationship within vertical strata in insect assemblages. We found that the ant assemblage was vertically stratified; ant species richness was higher at ground level than in the canopy, and the species composition differed between the two vertical strata. Moreover, we observed that β-diversity increased with geographic distance at ground level, but not in the canopy strata. However, contrary to our prediction, there was less species turnover (lower β-diversity) between vertical strata than between trees. These findings may reflect differences in the dispersal capacity and nest habit of ants from each vertical stratum, and also habitat heterogeneity on the horizontal scale, e.g. the species of sampled trees. Our results illustrate the importance of sampling more than one vertical stratum to understand the spatial distribution patterns of biological diversity in tropical rainforests.

Dung beetles are a well-defined guild within the family Scarabaeidae, with distinctive morphological, ecological and behavioural characteristics (Halffter & Matthews 1966). Although this group has been extensively studied (Hanski & Cambefort 1991) due in part to the important role they fulfil in ecosystems (Nichols et al. 2008), little information exists regarding population size and the scale of their dispersal abilities, especially in the Neotropical region. Moreover, few studies have been devoted to exploring the population dynamics of dung beetles (Roslin 1999, 2000).

A honeydew-producing scale insect, Stigmacoccus garmilleri (Margarodidae), is associated with oak trees (Quercus spp.) in highland forests of Mexico. Although feeding by ants on scale-insect honeydew is more frequently documented in the literature, the honeydew produced by feeding instars of S. garmilleri is sufficient to provide nourishment for birds. This study elucidates bird use of honeydew in the tropical montane forests near Chiconquiaco, Veracruz, Mexico, and uncovers patterns in honeydew foraging. Over a 2-mo period, 40 trees harbouring scale insects, located in both forest and pasture areas, were intensely studied (160 h of bird-foraging observations along with quantitative measurements of honeydew production). Fifteen resident bird species and 18 migrant species were observed visiting observation trees. Approximately 72% of the resident bird species and 83% of the migrant bird species observed were recorded to forage on scale-insect honeydew. Audubon's warbler (Dendroica coronata auduboni) was the most active consumer and defender of the resource. Of 118 aggressive chases observed, only 9.65% occurred in forest observation trees, and 90.3% in pasture trees. Audubon's warbler demonstrated preferential defence and territorial patrolling of scale-insect honeydew in scattered pasture trees.

Sacred groves (SG) of south India are either relics of primary or secondary forests or swamps, worshipped by the local communities, and distributed in the countrysides (CS) and forest landscapes of India. Studies suggest that SGs harbour a biodiversity different from that of adjoining CS and have a structural similarity to protected forests. Studies also suggest a negative effect of structural complexity of forests on predation. Considering these two expectations, we compared the predation of artificial caterpillars inside SGs and CSs with the hypothesis that predation will be less in SG than in CS. Examining the predation marks, we identified the likely predator and scored the intensity of predation. Bite marks of arthropods, birds, lizards and mammals were observed on caterpillars of both habitats. The predation rate and predation intensity were similar for overall predators and for each predator taxon in both habitats, despite the fact that mammal predation was mostly encountered in SGs. Because the proportion of predated caterpillars is not different between habitats and the intensity of predation is high in SGs, we conclude that SGs may not have a quality of the expected standard.

Whole plant form and function vary spectacularly across the seed plants. In recent years, plant evolutionary ecologists have begun to document this diversity on large geographic scales by analysing ‘functional traits’ that are indicative of whole plant performance across environmental gradients (Swenson & Enquist 2007, Wright et al. 2004). Despite the high degree of functional diversity in tropical forests, convergence in function does occur locally along successional or light gradients (Bazzaz & Pickett 1980, Swaine & Whitmore 1988).

Caliochory, or seed dispersal by birds as nest material, has been reported for several species, but its effectiveness remains unclear in most cases. Darwin’s finches are traditionally regarded as seed predators, but the observation of two nests challenges this assumption by demonstrating that they can act as seed dispersers via caliochory. Darwin’s finches incorporate cotton-like materials into their nests, including seeds of Darwin’s cotton (Gossypium darwinii), a shrub endemic to the Galápagos (Ecuador). Bird nests typically break down after intense rainfall, so the seeds incorporated into nests might benefit from suitable conditions for germination. By simulating the germination conditions experienced over a 72-h period by cotton seeds in a naturally fallen nest, this study qualitatively confirms the long-term viability of at least a small fraction of the seeds at the surface of the nest. Darwin’s finches might therefore provide seed-dispersal services to Darwin’s cotton and possibly, other native and exotic plants of the Galápagos commonly incorporated into nests. However, larger confirmatory studies are needed.

Understanding why ecological communities contain the species they do is a long-standing question in ecology. Two common mechanisms that affect the species found within communities are dispersal limitation and environmental filtering. Correctly identifying the relative influences of these mechanisms has important consequences for our understanding of community assembly. Here variable selection was used to identify the environmental variables that best predict tropical forest primate community similarity in four biogeographic regions: the Neotropics, Afrotropics, Madagascar and the island of Borneo in South-East Asia. The environmental variables included net primary productivity and altitude, as well as multiple temperature, precipitation and topsoil variables. Using the best environmental variables in each region, Mantel and partial Mantel tests were used to reanalyse data from a previously published study. The proportion of variance explained increased for each region. Despite increases, much of the variation remained unexplained for all regions (R2: Africa = 0.45, South America = 0.16, Madagascar = 0.28, Borneo = 0.10), likely due to different evolutionary and biogeographic histories within each region. Nonetheless, substantial variation among regions in the environmental variables that best predicted primate community similarity were documented. For example, none of the 14 environmental variables was included for all four regions, yet each variable was included for at least one region. Contrary to prior results, environmental filtering was an important assembly mechanism for primate communities in tropical forests worldwide. Geographic distance more strongly predicted African and South American communities whereas environmental distance more strongly predicted Malagasy and Bornean communities. These results suggest that dispersal limitation structures primate communities more strongly than environmental filtering in Africa and in South America whereas environmental filtering structures primate communities more strongly than dispersal limitation in Madagascar and Borneo. For communities defined by genera, environmental distance more strongly predicted primate communities than geographic distance in all four regions, which suggests that environmental filtering is a more influential assembly mechanism at the genus level. Therefore, a more nuanced consideration of environmental variables affects conclusions about the influences of environmental filtering and dispersal limitation on primate community structure.

Human activities change the biodiversity of ecological communities in at least three dimensions: ecologically, taxonomically and functionally. Gathering information on these three dimensions allows the improvement of biodiversity assessments and the increased understanding of anthropogenic impact on natural communities. In this study, we analysed the spider community associated with the tropical plant Heliconia aurantiaca in two contrasting habitat types: continuous forest and forest fragments in south-eastern Mexico. We examined the foliage, stems and bracts of H. aurantiaca individuals in both habitats. We categorized each spider species according to its behavioural and functional traits. We analysed ecological diversity using Hill numbers, taxonomic distinctness and functional diversity using the FRic index. Overall, we collected a total of 110 spiders, of which 44 individuals from 29 species were found in continuous forests, with 66 individuals from 36 species in forest fragments. We found greater ecological diversity in continuous forest than in fragments. In contrast, we found lower functional diversity in continuous forest than in fragments. Taxonomic diversity showed no significant difference between habitats. Forest fragmentation affected the biodiversity of spiders by disrupting species composition and function, which may lead to other ecological changes such as predator–prey interactions and other aspects of ecosystem functioning.

Vascular epiphytes can be quite abundant in vegetation close to the ocean surf, where they are exposed to a more or less continuous input of salt spray. The ecophysiological basis of their occurrence, i.e. salt tolerance or avoidance, is unresolved, because all previous studies were observational and conclusions thus circumstantial. Here, the effect of varying concentrations of salt water on germination, and growth and survival of seedlings and established plants was investigated in a growth cabinet study under controlled conditions. Seeds (1500), seedlings (750) and small tank plants (336) were from four populations of Werauhia sanguinolenta that were growing either close to the sea or inland in Panama. Changes of Na+ and K+ concentrations in plant tissue were also determined. No differences in the sensitivity to salt were found among populations, nor among life stages. External concentrations (Cext) of up to 15% sea water (c. 0.5% Na+) allowed complete germination as well as positive growth and survival in both seedlings and established plants over short periods (8–10 wk). After longer exposure (12 wk) of established plants visible damage and increased mortality were observed at lower Cext, but critical tissue Na+ levels were similar: c. 50 mg gDW−1. It is concluded that this common epiphyte does not meet the definition of a halophyte, but still possesses a rather high tolerance to sodium.

Primates are important seed dispersers in natural ecosystems and agro-ecosystems, but the latter scenario remains under-studied. The degree to which primates favour plant regeneration greatly depends on post-dispersal processes. The main objective of this study was to compare patterns of seed/seedling fate and seedling recruitment in two habitats of the black howler monkey (Alouatta pigra Lawrence 1933), rustic cocoa and rain forest, and two types of seed-deposition locations, monkey latrines and control locations. Field experiments were carried out within the non-overlapping home ranges of six monkey groups, three in cocoa and three in forest. Seed and seedling fates were assessed for one focal tree species, Brosimum lactescens. The probabilities of seed survival (0.52), germination (0.72), seedling establishment (0.73) and early seedling survival (0.38) were not affected by habitat or seed-deposition location. Late seedling survival was similar in the two habitats but was higher in control locations (0.22) than in latrines (0.09). In cocoa, 4641 seedlings of 59 species were recorded, in forest 3280 seedlings of 68 species. Seedling recruitment was similar in both habitats, but latrines had higher densities than control locations. The importance of agro-ecosystems with low management intensity for the maintenance of ecological processes in anthropogenic landscapes is discussed.

Addressing what affects predation among caterpillars, we conducted an experiment in a Bornean rain forest on 212 clay models of Tortricidae caterpillars (the herbivore) and 53 trees of Kopsia pauciflora (the host), located either in the open or under closed canopies. We predicted that the frequency of predatory attacks towards caterpillars increases (1) in canopy gaps and (2) on leaves damaged by herbivory, but (3) decreases among caterpillars that wrap their body in leaves. Each plant with caterpillar models was consecutively allocated to one of four treatments: caterpillars artificially rolled in leaves vs caterpillars on unrolled leaves, and caterpillars on artificially damaged vs undamaged leaves. Each time, caterpillar models were placed on the plants for 48 h, and then replaced with new models that were subjected to a new treatment. On average, our caterpillar models had a 21% chance of being attacked per 24 h. More attacks were performed by insects (81.6%) than birds. The attack frequency did not depend on the canopy cover or on leaf damage, but decreased among models rolled in leaves. This pattern was mainly attributable to insect attacks, which were also more frequent than bird attacks. Overall, the Tortricidae caterpillars seem to suffer comparable predation rates in the open and under closed canopies irrespective of the herbivory damage of leaves, but their leaf-rolling behaviour might reduce predation.

A prominent hypothesis to account for the maintenance of the woody species diversity in tropical forests is niche differentiation with respect to resources (Ashton 1969, Connell 1978). According to the hypothesis, species can coexist when each species is specialized for a specific set of growth conditions. Spatial and temporal variations in the forest understorey light conditions can be an important niche gradient. If species are adapted to a certain light condition for optimizing growth and share different optimal light conditions with each other, they can coexist by reducing direct competition; i.e. the regeneration niche differentiation sensu Grubb (1977). Species difference in rate of exclusion of trees in suboptimal light conditions due to mortality also contributes to species coexistence. Many scientists have emphasized the importance of the spatial and temporal variations in understorey light conditions on species coexistence in tropical forests (Clark & Clark 1992, Kohyama & Hotta 1990, Poorter & Arets 2003).