Alpine plant species are particularly vulnerable to climate change. Temperature fluctuations are projected to be most severe at high elevations. Even small shifts in temperature have major consequences on phenology, reproduction, and community composition. Early life stages are arguably the most important processes in the fitness of an individual plant and the dynamics and persistence of plant populations. These initial developmental stages are expected to be more vulnerable to changes in climate than adult life stages. To understand how early life stages of alpine plant species will respond to warming temperatures, seeds and seedlings of two species were exposed to three different temperature regimes. Temperatures were based on current and projected conditions under low and high emission scenarios. Two rare alpine species performed better under warmer temperatures at both the germination and seedling stages. The results show that early life stages of alpine plants may not be at high risk from warming temperatures; however, there are many other shifting climatic factors to consider, resulting from climate change beyond temperature alone.

Boswellia papyrifera (Del.) Hochst is a flagship species of semi-arid areas of the East African region with substantial economic, ecological and cultural values. However, its persistence is currently threatened by both anthropogenic and natural pressures. This calls for an immediate conservation action. Planting seedlings of B. papyrifera in natural habitats using nursery-grown seedlings from seed and cuttings has been little successful. Fencing of naturally regenerated seedlings (wildlings) established under the parent trees could be used as an alternative option. The objective of this study was to examine the effect of fencing on the seedling establishment and growth of B. papyrifera wildlings. The experiment was conducted using 36 plots in fenced and open conditions. The results showed that fencing significantly enhances the establishment and growth of B. papyrifera wildlings compared to the open areas. Fenced wildlings exhibited higher survival rates, increased height, greater leaf numbers, larger root collar diameters, larger leaf areas and higher leaf biomass compared to non-fenced wildlings. Therefore, the protection of B. papyrifera seedlings using a fencing intervention can improve the overall establishment and development of B. papyrifera seedlings, thereby contributing to the sustainable conservation and restoration of this valuable species.

The Brazilian Cerrado, a Neotropical savanna, is a fire-prone ecosystem where the ground layer biomass consists mainly of graminoids. However, as for other savannas, the effects of fire cues (such as smoke) on Cerrado grasses do not present a clear pattern, either for germination or seedling development. Smoke can stimulate different stages of the plant life cycle, which can alter the community and invasion processes. So far, most research on the subject focuses on germination, not addressing post-germinative phases, a sensitive stage of plant development. Here, we investigated the effect of smoke on a native (Echinolaena inflexa) and an invasive (Urochloa decumbens) grass species common in the Cerrado. We analysed germinative parameters and seedling mass and length after exposing the seeds to dry smoke for 5, 10, 15 or 20 min. Seedling development was assessed by measuring shoot and root systems after cultivating germinated seeds for 3, 7 or 15 d. Smoke did not affect germination percentages. However, fumigation reduced the mean germination time of both species and the germination onset of E. inflexa. U. decumbens had higher length values in all periods of cultivation, whereas mass values only surpassed that of E. inflexa at 15 d. Smoke exposure reduced the aboveground length of 7-d seedlings of U. decumbens, and mass of 15-d plants of both species. Also, smoke enhanced the root investment of the native and invasive species in different cultivation periods. Therefore, studying post-germinative parameters on seedling development may bring further insights into the smoke effects.

Seed germination, the first and critical step of the plant's life cycle, is affected by salt stress. However, the underlying mechanism of salt tolerance during early seed germination remains elusive. Here, a comparative RNA-seq analysis was performed using early germinating seeds either under normal conditions or in 100 and 150 mM sodium chloride. A total of 575 genes were up-regulated and 913 genes were down-regulated in the presence of 100 mM NaCl. Under the 150 mM NaCl treatment 1921 genes were up-regulated and 3501 genes were down-regulated. A total of 379 or 863 genes were up-regulated or down-regulated in both 100 and 150mM NaCl. These co-regulated genes were further analysed by GO enrichment. Genes in the categories abscisic acid signaling and synthesis and nutrient reservoir activity were significantly enriched in the up-regulated genes. Transcription factors responsive to gibberellin and auxin were significantly down-regulated by salinity stress. Genes related to anti-oxidant activity were significantly enriched in the down-regulated gene clusters by NaCl treatment. Our results suggest that salt stress inhibits seed germination by activating ABA synthesis and signalling, and depressing GA and auxin signalling, while preserving nutrition and down-regulated anti-oxidant activity. Our study provides more insight into the molecular mechanism of salt tolerance during early seed germination.

Yield loss was related to weed species composition and density in permanent plots, recorded several weeks after sowing of spring cereals in southern Sweden. A range of agronomic situations was included by experimentally varying fertilizer application and sowing density in 33 field trials in different locations during 3 yr. Direct gradient analysis, using yield loss as the sole predictor, arranged weed community composition in the spring along a gradient of small to large yield losses. Yield loss could be explained, to some extent, by the species composition in the spring. Species associated with situations with large losses were hempnettle and wild radish, whereas several benign species were identified based on their association with lack of yield loss. The results suggest that possible predictive tools using spring species composition would be improved if they also considered soil type and seed rate. Some agronomically important weed species were not identified as associated with yield loss when assessed in terms of their abundance in the spring, which may limit the possibilities of basing management decisions on weed plant density in the spring.

Mulches on the soil surface are known to suppress weed emergence, but the quantitative relationships between emergence and mulch properties have not been clearly defined. A theoretical framework for describing the relationships among mulch mass, area index, height, cover, light extinction, and weed emergence is introduced. This theory is applied to data from experiments on emergence of four annual weed species through mulches of selected materials applied at six rates. Mulch materials, in order from lowest to highest surface-area-to-mass ratio, were bark chips, Zea mays stalks, Secale cereale, Trifolium incarnatum, Vicia villosa, Quercus leaves, and landscape fabric strips. The order of weed species' sensitivity to mulches was Amaranthus retroflexus > Chenopodium album > Setaria faberi > Abutilon theophrasti, regardless of mulch material. The success of emergence through mulches was related to the capacity of seedlings to grow around obstructing mulch elements under limiting light conditions. Mulch area index was a pivotal property for quantitatively defining mulch properties and understanding weed emergence through mulches. A two-parameter model of emergence as a function of mulch area index and fraction of mulch volume that was solid reasonably predicted emergence across the range of mulches investigated.

Effects of cogongrass foliage and rhizome plus root residues on germination and shoot and root growth of barnyardgrass, bermudagrass, browntop millet, hemp sesbania, Italian ryegrass, and prickly sida were investigated in greenhouse experiments. Ground residues of dried cogongrass foliage and rhizomes plus roots were mixed separately with sterilized sand to obtain residue concentrations of 0, 0.25, 0.5, 1, 2, 4, and 8%. These residue concentrations were investigated on bermudagrass and Italian ryegrass, and the 8% residue concentrations were also evaluated on hemp sesbania, prickly sida, barnyardgrass, and browntop millet. Foliage and rhizome plus root residues at concentrations as low as 0.25% inhibited seed germination and shoot and root growth of all species except hemp sesbania. Germination of bermudagrass and Italian ryegrass was reduced by as much as 97% and shoot and root growth by as much as 94% at the highest residue concentrations. Rhizome plus root residues reduced germination and shoot and root growth of bermudagrass and Italian ryegrass more than foliage residues. Foliage and rhizome plus root residues reduced germination and shoot and root biomass of prickly sida, barnyardgrass, and browntop millet at similar levels. Results indicate that cogongrass tissue may contain allelochemicals that contribute to its invasiveness and extreme competitiveness.

To assess the effectiveness of interrow cultivation, counts were taken before and after cultivation of corn and soybean during the first two crop rotations in a corn–soybean–spelt organic grain cropping systems experiment. Overall control per cultivation event in soybean was 73%, about equal to the 67% of the interrow area actually covered by cultivator tools. Weed control per cultivation event in corn was higher, and exceeded 91% at later cultivations. The greater weed control in corn relative to soybean, particularly at later cultivations, was probably due to more soil being thrown into the corn row, burying a greater proportion of the weeds. Perennial weeds emerging from roots and rhizomes were less controlled by cultivation events than weeds emerging from seeds. Relatively poor control of perennials was due both to rapid resprouting during the few days between cultivation and assessment and to a lower probability of death in the zone indirectly disturbed by cultivator tools. Seedlings of perennial species suffered greater mortality from cultivation than annual weeds, probably because the low relative growth rate of perennials resulted in small seedlings that were susceptible to cultivation. Common ragweed was less controlled by cultivation than other annual weeds, probably because its heavier seeds produced larger seedlings at the time of cultivation. These larger seedlings were less likely to be buried during hilling-up operations at later cultivations. Counts of weeds before and after individual cultivation events provide insight into the processes affecting weed mortality during mechanical management.

Although seed dispersal plays a critical role for plant regeneration, the long-term benefits of frugivores for recruitment success have been poorly explored. We evaluated the relative importance of tree species abundance and of frugivore-related factors for successful plant recruitment on 18 tree species in a lowland Colombian rain forest. We combined census data from four 1-ha plots of trees (>10 cm dbh), saplings (1–5 cm dbh) and seedlings (<1.7 m) with a dataset describing tree–frugivore interactions. Seedling abundance was higher for large-seeded species dispersed by the spider monkey, while sapling abundance was higher for large-seeded species dispersed by birds. The identity of the dispersal agent and its interaction with seed size explained 20–30% of the total variance in seedling and sapling abundance across scales. Seed size consistently influenced the species abundance of seedlings and saplings across scales, but in opposite ways. These developmental changes suggest that what is beneficial to seedlings is not necessarily beneficial to saplings. Species identity explained 10–50% of the total variance in seedling and sapling abundance among and within 1-ha plots. Overall, our findings suggest that recruitment success is context-dependent as the relative importance of the different variables addressed may shift along spatial and temporal scales.

In Iropical seasonal forests, mass seedling death may incidentally occur early in the rainy season following untimely germination provoked by an isolated heavy rainfall. We hypothesized that, in a soil with little moisture retention capacity, irregular rainfall patterns would result in large fluctuations of water supply and, in the early wet season, drought episodes could cause seedling death. This hypothesis was tested in a seasonal tropical forest in Mexico where seedling density is low and the soil consists of almost pure sand with a low water retention capacity. Various patterns of simulated rainfall were applied in the forest to seeds and seedlings of three common tree species. Overall very little difference in germination and seedling survival was observed between the various rainfall treatments. The results showed that rainfall patterns and the soil texture may interact in a much more complex way than was initially hypothesized, and that water availability to seeds and seedlings is not necessarily predictable. The absence of seedlings of the three tree species might be better explained by high seed predation and low light level in the understorey.

The effects of forest habitat, canopy light condition, vertebrate herbivory and species mean seed size on growth of tree seedlings were evaluated for six widely different species of North Queensland tropical rain forests. Two forest localities differing in size and rainfall intensity were used for the trial. In each forest, seedlings were transplanted three weeks after germination into small to medium-sized canopy gaps and into the forest interiors, with half protected by cages and the other half unprotected. Growth measurements were made over a period of 16 months. All growth parameters examined differed significantly between the six species. At the end of the study period, for most species, forest site and protection from vertebrates did not affect seedling biomass. For all species, growth was higher in gaps than in forest interior, but most biomass allocation patterns did not differ between the two habitats. This was attributed to the small difference in photosynthetically active radiation (PAR) levels between the two habitats (interior, 0.48–2.53% PAR; gap, 3.58–7.09% PAR). Between species, seedling growth in the forest interior and sensitivity to increasing light were significantly correlated with initial mean seed size. The growth ability of the six species in and out of canopy gaps is discussed in terms of regeneration status of forest tree species.

Forests are being converted to grasslands and croplands across Africa and natural regeneration of forests is typically poor. In Serengeti National Park, Tanzania, the savanna tree species Acacia polyacantha established in riparian grasslands and forest trees subsequently established within these stands. We examined the conditions for establishment of: (1) A. polyacantha and (2) riparian (non-Acacia) forests. Fire was excluded from three grassland areas for 5 y allowing A. polyacantha to establish during 1999 when dry-season rainfall was high. The seedlings of forest tree species did not establish in grasslands, but were found in large A. polyacantha stands (> 0.3 ha) with reduced grass cover (< 10%), higher cover of herbs (> 80%) and thorny shrubs (> 90%). Seeding survival was high in large stands (0.87 y−1), but declined in artificial canopy gaps due to the ingrowth of grasses (0.21 y−1) and subsequent fires (0.07 y−1). Shrub removal also reduced seedling survival (0.46 y−1) due to browsing by antelope. We propose that: (1) A. polyacantha establishes in pulses perhaps as infrequently as twice per century, and (2) riparian forests in Serengeti have established via facilitation under larger stands where shade excludes grass, and therefore fires and thorny shrubs exclude browsers.

By means of direct manipulation, this study showed that the testa protects the germinating seed and germinant from decay (an advantage in moist soils) and desiccation (an advantage in periodically dry soils) in four species, all of which retain their testas until the cotyledons are lifted above the soil. Furthermore, the testa prevents early spreading of the cotyledons (an advantage when elongating through soil and litter). Almost all germinants of Banksia hookeriana and Leucadendron eucalyptifolium, with their testas removed, died and rotted away after being sown on the soil surface or at a range of depths. Hakea cyclocarpa and H. strumosa showed only minor losses compared with the intact germinants. All naked germinants were smaller than the controls at any depth, except among H. cyclocarpa. Absence of the testa did not differentially affect the length of the hypocotyl in the dark or light, but lateral spread of the cotyledons was accelerated, especially in the dark. Removal of a small fraction of the testa was sufficient to cause general mortality of B. hookeriana germinants but not of H. cyclocarpa or H. strumosa. After imbibition, water content of the naked embryos of B. hookeriana reverted to the air-dry state within 24 h of sowing in air-dry sand, while intact seeds were still moist even after 7 days of drying. Compared with intact seeds, drying periods of 3–7 days decreased the amount of germination and root growth of naked embryos after rewetting, and increased microbial infection of the survivors. Removal of the testa from germinants was sufficient to cause general mortality after only 6 h in air-dry sand. In contrast, most intact germinants with short radicles recovered after drying for 2 days.

Computer software called WeedCast was developed to simulate weed seed dormancy, timing of seedling emergence, and seedling height growth in crop environments in real-time and using actual or forecasted weather data. Weather data include daily rainfall and minimum and maximum air temperatures. Air temperatures are converted to average daily soil temperature at 5-cm soil depth using a series of equations that are specific for soil type, tillage system and previous year's crop-residue type. Daily rainfall and soil temperature estimates are combined to determine soil water potential (in megapascals) at 5-cm depth. Daily estimated soil water potential or soil temperatures are matched to empirically-derived threshold values that induce secondary dormancy in seeds of certain species. Soil growing degree days (GDD), calculated from soil temperatures, are used to project maximum emergence rates of weed seedlings. Emergence ceases on days when soil water potential falls below threshold values specific to each species. GDD based on air temperatures are used to estimate post-emergence seedling height growth. All three types of simulation provide information that allows users to answer important weed management questions in real-time. These types of questions include but are not limited to the following: (1) Are soil-applied treatments necessary? (2) How late can pre-emergence herbicides be applied? (3) When should mechanical control be implemented? (4) When should field-scouting commence and end? (5) When should post-emergence herbicides be applied?

Although herbivores may account for a significant source of seed and seedling mortality in many tropical tree species, plant species differ in their response to seed damage. Here we investigate the relative effects of seed predation on the regeneration of five tree species in a mid-elevation Papua New Guinean rain forest. Exclosure treatments and shade-house experiments were monitored from November 2004 to March 2006 to assess the differential effects of seed predation on seed viability and seedling growth. Results indicate that although seed predators attack all five focal species, they influence the seedling populations in two, Cerbera floribunda and Microcos grandiflora, and minimally affect the seedling populations of Terminalia impediens, Pandanus penicillus and Endiandra latifolia in the years measured. Predation and germination frequencies were compared to the abundance of focal species at several life stage classes to explore potential correlations between species-specific seed mortality patterns and life stage distributions. We found that the species-specific influence of mammalian seed predators correlated with abundance distributions in three life stages. Species with high survivorship after seed predator attacks displayed a significant decrease in abundance from the seedling-to-sapling transition, while those species with high seed mortality demonstrated relatively even distributions of seedlings, saplings and adults (> 10 cm dbh). These contrasting patterns suggest that differential seed predation effects on regeneration may play a key role in the recruitment of individuals to the sapling stage.

Maintenance of high plant diversity in tropical rain forests has been hypothesized to be related to intense seed predation, and studies have shown that the impact of seed-eaters varies according to seed size, forest type and level of disturbance. The hypothesis that seed survival and seedling recruitment depending on seed size, are related to forest type and the intensity of harvesting and stand refinement was therefore tested at Paracou, French Guiana, for three animal-dispersed tree species. Two forest areas, corresponding to two forest types, were selected based on the occurrence of a dominant species, Eperua falcata (Caesalpiniaceae). Two factors were tested: forest type (E. falcata-rich and E. falcata-poor) and level of harvesting (unlogged, low intensity of logging, low intensity of logging and thinning liberation by tree-poison girdling) within each forest type. Overall, there was no effect of species nor of logging treatment within forest type after 6 wk. There was only a significant effect of forest type on seed survival in the large-seeded Carapa procera, a rodent-dispersed species in the Meliaceae. In the two medium-sized seed species, Pradosia cochlearia and Manilkara bidentata, two frugivore-dispersed Sapotaceae, the effect of treatment was overall significant but was also highly variable between plots within treatments. After 1 y, C. procera showed little seedling recruitment due to low seed removal and dispersal, and high seed-seedling predation under all conditions. Neither forest type, nor treatment nested within forest type, affected seedling recruitment in P. cochlearia whereas M. bidentata seedlings were favoured in unlogged conditions at the E. falcata-poor forest type. These results suggest that species characteristics (such as seed size and palatability), or local tree diversity and resources for granivores select for contrasting patterns in tree recruitment between forest type in the rodent-dispersed tree species, and these interact with level of tree harvesting and stand refinement in the other frugivore-dispersed tree species.

The spatial and temporal variation in litter disturbance by a medium-sized bird, the chowchilla (Orthonyx spaldingii Ramsay, Orthonychidae) was documented, and its potential impacts on tree seed germination and early seedling survival in an Australian tropical rain forest experimentally investigated. Chowchilla disturbances occurred on ridges, slopes and drainages in all four seasons surveyed. In some areas litter was completely turned over as frequently as every 5 wk. Tethered seeds exposed to disturbance were moved farther and experienced significantly greater variation in litter cover than those protected from disturbance. When seeds of two canopy trees were placed in litter environments simulating those created by chowchillas, the seeds of one species showed significant effects of litter treatment on germination while those of the other showed no significant effects. Seedling cohorts of four tree species were followed for 6 wk soon after germination and all showed higher survival in vertebrate exclosures. The two most abundant species suffered 68% and 35% mortality in six wks, with the majority of that unambiguously due to chowchillas. It is argued that litter-disturbing birds increase litter heterogeneity and significantly impact early seedling mortality. These effects could be important in maintaining evenness and diversity of the seedling community.