Stripe rust caused by Puccinia striiformis f. sp. tritici (Pst), is a devastating fungal disease of wheat (Triticum aestivum L.). The best economical technique for disease control is breeding for genetic resistance to stripe rust. To find resistance genes in landrace PI388222 from Pakistan, a segregating population was developed by a cross between PI388222 and susceptible Australian spring wheat line Avocet ‘S’. The F2:4 seeds were harvested and seeds were planted in the greenhouse of Washington State University Pullman, to grow F4:5 recombinant inbred lines (RIL). A variable set of seedling reactions were noted when a set of 136 F5 and parental lines were screened with four Puccinia striiformis f. sp. tritici races (PSTv-37, PSTv-40, PSTv-4 and PSTv-51). The great proportion of RILs showed resistant reaction displayed by the RILs was against PSTv-40, for which 85% of the RILs showed resistant reaction, while less resistance to the race PSTv-37 was detected against which the resistance was for only 49% of the RILs. The RIL population was further evaluated at two locations; Palouse Conservation Field Station (PCFS) and Mount Vernon (MV). In MV field, 76% of RILs displayed resistant reaction while 15% of RILs exhibited moderate reaction. About 53% of RILs exhibited resistant reaction to four P. tritici races that were used in glasshouse screening and they were also resistant in field environments at PCFS and MV. This study demonstrates that landrace comprises partial resistance in the range of resistant to moderately resistant lines.

Meloidogyne paranaensis is responsible for considerable losses in coffee production. Because of the distribution of this species in the main Coffea arabica producing regions, there is a need for management practices to ensure the sustainability of coffee production. In this work, we evaluated the agronomic performance of resistant clones of the Conilon coffee cultivar Vitoria Incaper 8142 in areas infested by M. paranaensis in the west region of Minas Gerais, Brazil. Clones 2V, 3V, and 6V presented the lowest number of nematodes per gram of roots and were considered resistant to M. paranaensis. All other clones were considered tolerant to this nematode, and one had good vegetative growth but allowed nematode reproduction. Clones of Vitoria Incaper 8142 of C. canephora represent an alternative to coffee production in areas infested by M. paranaensis including areas traditionally cultivated with C. arabica.

In reproducing ewes, a periparturient breakdown of immunity is often observed to result in increased fecal egg excretion, making them the main source of infection for their immunologically naive lambs. In this study, we expanded a simulation model previously developed for growing lambs to explore the impact of the genotype (performance and resistance traits) and host nutrition on the performance and parasitism of both growing lambs and reproducing ewes naturally infected with Teladorsagia circumcincta. Our model accounted for nutrient-demanding phases, such as gestation and lactation, and included a supplementary module to manage the age structure of the ewe flock. The model was validated by comparison with published data. Because model parameters were unknown or poorly estimated, detailed sensitivity analysis of the model was performed for the sheep mortality and the level of infection, following a preliminary screening step. The parameters with the greatest effect on parasite-related outputs were those driving animal growth and milk yield. Our model enables different parasite-control strategies (host nutrition, breeding for resistance and anthelmintic treatments) to be assessed on the long term in a sheep flock. To optimize in silico exploration, the parameters highlighted by the sensitivity analysis should be refined with real data.

Root-knot nematodes (RKNs), Meloidogyne spp., are considered, worldwide, as one of the main pathogens of solanaceous crops, including pepper (Capsicum spp.). Restrictions on the use of standard nematicides have motivated the development and use of resistant cultivars and rootstocks. Three genes in pepper, called Me1, Me3 and N, confer resistance to the three main RKN species (Meloidogyne incognita, Meloidogyne javanica and Meloidogyne arenaria). However, their effectiveness seems to be limited because nematode populations that have overcome the resistance have been found, leading to a search for new sources of resistance and strategies to preserve their effectiveness. In two greenhouses and over a 7-month growing period, we evaluated the resistance to M. incognita and the agronomic behaviour as rootstocks of nine pepper (Capsicum annuum) accessions – HDA330 (Me1 carrier), Serrano Criollo de Morelos, (Me3 carrier), Yolo Wonder (partially resistant) and another six accessions of unknown resistance originating from cultivars well adapted to the local growing conditions. The resistance conferred by the Me1 gene was more robust than that conferred by Me3. Resistance to M. incognita was found in four new accessions: P13, CTL, CT5, and P14. In P13, the level of resistance was similar to that of HDA330. The resistant accessions showed better agronomic behaviour than the susceptible accessions, which was most noticeable towards the final of the growing period. Some accessions constitute a potential resource for use in the genetic breeding of RKN-resistant rootstocks.

Improving the fowl's natural ability to clear Salmonella from their body is important in reducing disease prevalence in poultry flocks, as recommended by a recent regulation of the European Commission. It may be efficient, as expected from estimation of heritability coefficients : 0.16 in chicks and 0.18 for global contamination of hens. The animal's age has to be considered since the genetic correlation between resistances at the two ages is negative. Selecting two series of divergent lines for increased or decreased resistance, after inoculation at one week of age (chick resistance) or at the peak of lay (adult resistance) confirmed the efficiency at least of selection for the adult resistance. In parallel, genes controlling variations to Salmonella resistance were researched and several QTLs identified in crosses between experimental lines and, for some of them, confirmed in commercial lines. Thanks to the derivation of a model of Salmonella propagation within a flock, it has been shown that a combination of vaccination and genetic selection can result in very low percentage of contamination.

It is more than a century since Marek's disease (MD) was first reported in chickens and since then there have been concerted efforts to better understand this disease, its causative agent and various approaches for control of this disease. Recently, there have been several outbreaks of the disease in various regions, due to the evolving nature of MD virus (MDV), which necessitates the implementation of improved prophylactic approaches. It is therefore essential to better understand the interactions between chickens and the virus. The chicken immune system is directly involved in controlling the entry and the spread of the virus. It employs two distinct but interrelated mechanisms to tackle viral invasion. Innate defense mechanisms comprise secretion of soluble factors as well as cells such as macrophages and natural killer cells as the first line of defense. These innate responses provide the adaptive arm of the immune system including antibody- and cell-mediated immune responses to be tailored more specifically against MDV. In addition to the immune system, genetic and epigenetic mechanisms contribute to the outcome of MDV infection in chickens. This review discusses our current understanding of immune responses elicited against MDV and genetic factors that contribute to the nature of the response.

In sheep, the traditional chemical control of gastrointestinal nematode (GIN) parasites with anthelmintics has led to the widespread development of anthelmintic resistance. The selection of sheep with enhanced resistance to GIN parasites has been suggested as an alternative strategy to develop sustainable control of parasite infections. Most of the estimations of the genetic parameters for sheep resistance to GIN parasites have been obtained from young animals belonging to meat- and/or wool-specialised breeds. We present here the estimated genetic parameters for four parasite resistance traits studied in a commercial population of adult Spanish Churra dairy ewes. These involved two faecal egg counts (FECs) (LFEC0 and LFEC1) and two serum indicator traits, the anti-Teladorsagia circumcincta fourth stage larvae IgA (IgA) and the pepsinogen (Peps) levels. In addition, this study has allowed us to identify the environmental factors influencing parasite resistance in naturally infected Spanish Churra sheep and to quantify the genetic component of this complex phenotype. The heritabilities estimated for the two FECs analysed (0.12 for LFEC0 and 0.09 for LFEC1) were lower than those obtained for the examined serum indicators (0.19 for IgA and 0.21 for Peps). The genetic correlations between the traits ranged from 0.43 (Peps−IgA) to 0.82 (LFEC0−LFEC1) and were higher than their phenotypic counterparts, which ranged between 0.07 and 0.10. The heritabilities estimated for the studied traits were lower than previously reported in lambs. This may be due to the differences in the immune mechanisms controlling the infection in young (antibody reactions) and adult (hypersensitivity reactions) animals/sheep. In summary, this study demonstrates the presence of heritable variation in parasite resistance indicator traits in the Churra population studied, which suggests that genetic improvement is feasible for this complex trait in this population. However, further studies in which the experimental variables are controlled as much as possible are needed to identify the best trait that could be measured routinely in adult sheep as an indicator of parasite resistance.

The peri-parturient period is crucial for controlling worms as the acquired immunity of ewes is disrupted, resulting in an increase in faecal worm egg counts. Two hypotheses were tested in this experiment – that ewes bred for worm resistance would have lower faecal worm egg counts than unselected control ewes, during late pregnancy and lactation, under similar but separate grazing areas; and also that numbers of infective nematode larvae would be lower on pastures grazed by resistant ewes than pastures grazed by unselected control ewes. Faecal samples were collected from resistant and unselected ewes in late pregnancy and early lactation, during the winter rainfall season, and analysed for numbers of Trichostrongylus colubriformis and Teladorsagia circumcincta. Pasture samples were taken 1 week before and 7 weeks after lambing started and analysed for infective larvae. In all sheep, worm egg counts rose 2 weeks prior to lambing and continued into lactation. Worm egg counts were significantly lower in the resistant ewes from 1 week before lambing to 2 weeks after lambing. There were no differences in egg counts between single- and twin-bearing ewes in the resistant line. However, twin-bearing control ewes had significantly higher egg counts than single-bearing control ewes. Following lactation, plots grazed by resistant ewes had substantially less contamination with T. colubriformis larvae, but there were no differences in numbers of T. circumcincta larvae. Our results demonstrate that sheep bred for worm resistance has lower worm burdens during the peri-parturient phase and that lambs born to resistant ewes face a lower larval challenge during their introduction to grazing. In our environment, selection for low worm egg counts has produced sheep highly resistant to T. colubriformis, but has had less impact on resistance towards T. circumcincta.

The pattern of oocyst production of 8 inbred lines of chickens was compared for each of the 7 species of Eimeria which infect this host. Both the overall numbers and the pattern of oocyst production differed in the inbred lines, but there was no evidence of prolonged cycling of schizogenic developmental stages. Comparison of the numbers of oocysts produced by the different lines indicates that there may be common genetic factors affecting susceptibility to 6 of the 7 species. Surprisingly there appears to be an inverse relationship between susceptibility to E. tenella and susceptibility to the other species: lines which produced most oocysts of E. tenella produced least oocysts of the other species and vice-versa.

Red Maasai and Dorper sheep were evaluated for their resistance to gastro-intestinal (GI) nematode parasites (predominantly Haemonchus contortus), productivity and productive efficiency (assessed on a metabolizable energy basis) in experiments undertaken at the Kenyan coast (sub-humid environment) and the Kenya highlands (semi-arid environment). In both ewes and lambs there were few significant genotype by environment (G X E) interactions for either resistance (assessed by faecal egg counts-FEC) or resilience (assessed by blood packed red cell volume-PCV) to GI nematodes. Red Maasai sheep were consistently more resistant (low FEC) and more resilient (high PCV) than Dorper sheep. However, there were significant G X £ interactions for ewe reproductive performance and for ewe and lamb mortality rates and live weights. These interactions were due to very poor performance of the Dorper compared to the Red Maasai in the sub-humid coastal environment and to the much improved performance of the Dorper in the semi-arid environment. When these component traits were combined into estimates of flock productivity and productive efficiency there were highly significant GXE interactions with the Red Maasai sheep being considerably more efficient than Dorper sheep in the sub-humid environment, while in the semi-arid environment there was a negligible breed difference in productive efficiency. The results are discussed in terms of breeding strategies for smallholder farmers and pastoralists managing sheep in low-input systems in sub-humid and semi-arid environments.

The high cost of rearing pathogen-free poultry, coupled with increases in importation from non-European countries where hygienic measures may be less stringent indicates that biological approaches to control of infection with food-borne pathogens will continue to be important. The major measures are dealt with in this review, together with the positive and negative aspects of each of these approaches. They include antibiotic therapy and prophylaxis, competitive exclusion using intestinal flora preparations, live and killed vaccines and the increasing interest in exploiting natural genetic resistance to infection and disease.

Resistance and resilience to naturally acquired gastro-intestinal (GI) nematode parasite infections (predominantly Haemonchus contortus) were studied in 1785 lambs born over six lambings (1991 to 1996) consisting of 212 Red Maasai, 311 Dorper and 1262 crossbred (Red Maasai-Dorper) lambs in the sub-humid coastal region of Kenya. These lambs were the progeny of 41 Dorper and 35 Red Maasai rams. Live weights (LWT), blood packed cell volume (PCV) and faecal egg counts (FEC) were recorded at 1- to 2-monthly intervals from birth until the lambs were about one year of age. Red Maasai were more resistant and resilient post weaning to infections with GI nematodes than Dorper lambs as shown by their significantly lower FEC and their significantly higher PCV, respectively. An increasing proportion of Red Maasai genes in the crossbred lambs was associated with decreased FEC and higher PCV, but there was no heterosis for logarithm-transformed FEC (LFEC) or PCV. From one month of age Red Maasai lambs were significantly lighter than Dorper lambs by about 1 kg, but Red Maasai lambs had significantly lower lamb mortality rate from birth to 12 months of age (proportionately 0·30 and 0·66, respectively). Heritability estimates from a repeated measures analysis for records taken at 6 and 8 months of age were 0·14 (s.e. 0·05) for PCV from an animal model and 0·12 (s.e. 0·05) for LFEC from a sire model. The heritability estimate for LFEC from a repeated measures analysis including the four measurements recorded between 6 and 12 months of age was significantly higher (P < 0·05) for Dorper-sired lambs (0·15, s.e. 0·05 for an animal model and 0·19, s.e. 0·07 for a sire model) than for Red Maasai-sired lambs (0·00 and 0·01, s.e. 0·02). The phenotypic and genetic correlations between PCV and LFEC were moderately to highly negative and averaged –0·34 and –0·81, respectively. None of the genetic correlation estimates between LWT and PCV and LWT and LFEC for lambs post weaning were significantly different from zero. The heritability estimates for PCV and LFEC have important implications for within-breed genetic improvement programmes: for the Red Maasai, improvement should concentrate on resilience (e.g. selection for high PCV); for the Dorper, selection should be feasible for both improved resistance (low FEC) and resilience (high PCV).

A study was carried out from 1992 to 1996 to compare the resistance to naturally acquired gastro-intestinal (GI) nematode parasite infections (predominantly Haemonchus contortus) of Galla and Small East African goats in the sub-humid coastal region of Kenya. A total of 204 Galla and 349 Small East African (SEA) kids were born from five kiddings. These were the progeny of 18 Galla and 17 SEA bucks. Live weights (LWT), blood packed-cell volume (PCV) and faecal egg count (FEC) were recorded at 1- to 2-month intervals from birth to about 14 months of age. The SEA kids were more resistant to GI nematode parasites than Galla kids as shown by their significantly lower FEC (P < 0·001) in the post-weaning period (8- to 14-month-old kids) and lower mortality from birth to 14 months of age (P < 0·05). There was no significant (P > 0·05) breed effect on PCV, but Galla kids were significantly heavier (P < 0·001) at all measurement times between birth and 14 months of age. Heritability estimates for LWT, PCV and FEC at the different sampling times were characterized by high standard errors. Heritability estimates for records taken at 4·5 and 8 months of age from a repeated measures analysis were 0·18 (s.e.0·08) for PCV and 0·13 (s.e.0·07) for logarithm-transformed FEC. The phenotypic and genetic correlation estimates between PCV and LFEC were moderately to highly negative and averaged –0·36 and –0·53, respectively. The results are discussed in relation to the limited evidence for resistance to GI nematode infections in goats and compared with the much stronger evidence for resistance in sheep.

The effects on genetic and economic responses of adding faecal egg count (FEC) in the aggregate genotype of dairy sheep in Greece were investigated. The extra responses obtained in the full aggregate genotype were expressed as a percentage change of the responses in terms of genetic gain, profit and selection response of single traits before adding the trait. The initial aggregate genotype included the traits milk fat yield (FY) and number of lambs weaned per ewe per year (NLW). Inclusion of FEC in the aggregate genotype resulted always in increased genetic gain and profit. The extra responses from adding the FEC in the index selection were variable and often very large, depending on the parameters varied i.e. the economic weight of FEC and the genetic correlation of FEC with the other production traits. For a wide range in the size of the genetic correlations between FEC and other traits, gains of FEC and no appreciable losses of responses for FY and NLW were predicted when FEC accounted proportionately for 0·10 to 0·20 of the total monetary genetic deviation. While FEC showed a wide range of change, selection responses of FY and NLW remained remarkably insensitive under various weightings of FEC and different genetic correlations of FEC with the production traits. The genetic and economic efficiency of alternative selection schemes were also evaluated. A two-stage selection procedure involving preliminary selection of rams on dam’s FEC, FY, NLW and on their own FEC and final culling on progeny’s FEC, FY and NLW was predicted to be the most efficient in both genetic and economic terms. Female replacements should be selected on dam’s FEC, FY and NLW (first stage) and their own FEC, FY and NLW (second stage). When repeated measurements of FEC are taken, the recommended number of FEC measurements was found to be 4.

Resistance to naturally acquired gastro-intestinal (GI) nematode parasite infections (predominantly Haemonchus contortus) was studied in 166 Red Maasai, 230 Dorper and 294 crossbred (Red Maasai Х Dorper) ewes in the sub-humid coastal region of Kenya. Live weights (LWT), blood packed-cell volume (PCV) and faecal egg counts (PEC) were recorded at mating, 3 months post mating, 1 week before lambing and 1, 2 and 3 months post lambing for four separate lambings that took place between 1993 and 1996. The Red Maasai ewes were more resistant to GI nematode infections than Dorper ewes as shown by their significantly lower FEC and significantly higher PCV at most of the sampling times over the reproductive cycle. The breed difference for FEC was significant in the lactating ewes but not in the non-lactating ewes. At most sampling times, the crossbred ewes were as susceptible as the Dorper ewes in terms of both PCV and FEC, particularly at the 1 and 2 month post-lambing samplings. Resistance was also manifested by a lower proportion of ewes having to be treated with an anthelmintic and a lower mortality rate in the Red Maasai than the Dorper. The Red Maasai ewes were significantly lighter by about 1 to 2 kg than the Dorper ewes at all sampling times. There was a significant increase in FEC and decrease in PCV over the first 2 months of lactation in lactating ewes compared with non-lactating ewes. This peri-parturient increase in FEC occurred in both breeds and the crossbreds but was more marked in the susceptible Dorper ewes.

The evidence for both between- and within- breed genetic variation for resistance to gastrointestinal (GI) nematode parasites is reviewed. It is concluded that much of the published research on breed characterisation for resistance suffers from poor experimental design. Prior to the initiation of a 6-year study that has just been completed in coastal Kenya there were no estimates of within-breed genetic variation (i.e. heritabilities) of resistance in sheep or goats in the tropics. This study has confirmed that Red Maasai sheep and Small East African (SEA) goats are more resistant to GI parasites (predominantly Haemonchus contortus) than Dorper sheep and Galla goats. Heritability estimates for logarithm transformed faecal egg counts (an indicator of resistance) in 8-month-old lambs was 0.18±0.08 for all lambs, but higher in the susceptible Dorper-sired lambs (0.35±0.16) than in the resistant Red Maasai-sired lambs (0.06±0.07). This difference in heritability suggests that many centuries of natural selection have fixed most of the genes for resistance in the Red Maasai sheep. The resistant Red Maasai sheep and SEA goats were two to three times more productive than the susceptible Dorper sheep and Galla goats in the sub-humid coastal Kenya environment.

Parasitic helminths (worms) cause serious infectious diseases in humans and domestic animals. Control of these infections relies mostly on chemotherapeutics (the anthelmintics), but resistance has developed against most of these broad-spectrum drugs in many parasite species. These resistant parasites are being used to elucidate the molecular mechanisms of drug resistance and drug action. This has led to the development of sensitive assays to detect resistant parasites, but this has not delayed the emergence of additional drug resistant parasite populations. Therefore, as development of new drugs by pharmaceutical companies is slow, we may have to be prepared for a time when broad-spectrum drugs are no longer effective, especially against worms of sheep.

During a 3-year period, from April 1991 to December 1993, in a flock with four lambing periods annually, faecal samples from lambs at weaning at the age of 3 months (no. = 1756), were examined for gastro-intestinal nematode eggs by the McMaster method. Faecal samples were also examined at the age of 9 (no. = 170), 12 (no. = 157), 15 (no. = 253) and 18 (no. = 85) months from the females only. From June to December 1993 packed cell volume (PCV) was also examined from lambs at weaning. Seven genotypes were used in this study.

The faecal egg counts were affected by genotype, birth season, type of birth and rearing, sex and age. First generation cross of Sumatra × Barbados Blackbelly had lowest eggs per g of faeces (EPG) followed by Sumatra, St Croix, Sumatra × St Croix Fl and F2 and Sumatra × Java Fat tail. Lambs born in February-March when rainfall was low had lower EPG (V < 0·05) than those born in May-June or August-September. The EPG of lambs born and reared singly were significantly lower (P < 0·001) than those born twin, triplet or quadruplet. Female lambs had lower EPG than male lambs (P < 0·001). The EPG of lambs at 3 months were higher than at 9, 12, 15 or 18 months (P < 0·001).

PCV was affected by genotype, sex, type of birth and rearing and season of birth. There was a positive correlation between PCV and weaning weight of lambs and a negative correlation between EPG and weaning weight. These results show that the crosses of St Croix and Barbados Blackbelly with local Sumatra sheep are at least as resistant or more resistant to gastro-intestinal nematodes than pure Sumatra breed and therefore these breeds can be used in cross breeding programmes to improve the body size of local Sumatra sheep.

Experiments were conducted in 1989 to evaluate converted sorghum accessions for preflowering extended panicle and soft-dough stage panicle feeding resistance to fall armyworm, Spodoptera frugiperda (J. E. Smith), by incorporating plant tissue into artificial insect diet. Spodoptera frugiperda biological parameters measured were larval and pupal weights, mean duration of the larval stage, time to adult eclosion, survivorship, fecundity, net reproductive rate, intrinsic rate of increase, and relative fitness. The converted lines IS 2246C, IS 2403C, IS 2825C, IS 7007C, IS 8337C, IS 12592C, IS 12612C, IS 12657C, IS 12666C, and IS 12681C were more resistant to both preflowering and soft-dough stage panicle feeding by S. frugiperda than the resistant check NK Savanna 5. The genotypes IS 1340C, IS 2553C, IS 2569C, IS 6911C, IS 7498C, IS 12219C, IS 12617C, IS 12662C, and IS 12664C were more resistant than the resistant check to S. frugiperda feeding in the soft-dough stage, but not in the preflowering stage of panicle development. Plant antibiosis was the major mechanism of resistance in these lines at both stages of the panicle development.