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Paleoindians buried Spirit Cave Man in a Nevada cave, and archaeologists excavated these remains in 1940. Radiocarbon testing in 1996 dated the burial and associated grave goods as older than 10,700 years. Living just 10 miles from Spirit Cave, the Fallon Paiute-Shoshone Tribe filed a NAGPRA claim in 1997 requesting the repatriation of the Spirit Cave ancestor they call “The Storyteller.” This claim ignited a 20-year legal dispute that led the Fallon Paiute-Shoshone Tribe to make the gut-wrenching decision to permit DNA testing. This article documents a 10,000-year genetic continuity firmly linking Paleoindians at Spirit Cave to the Lovelock culture and that strongly suggests continuities to modern Paiutes living there today with no population replacement. We explore the associated radiocarbon record of these dynamics to understand the syncopated population movements that responded to shifting resource distributions. Resilience theory provides an operational way to understand this extraordinary continuity through key concepts, including tipping points, early warning signals, sunk-cost effects, and loss-of-resilience hypotheses. The Spirit Cave case also underscores the moribund concepts and assumptions underlying a century of Great Basin anthropological study that misread this long-term episode of Indigenous resilience and survivance.
This chapter is divided into two sections. The first explains fundamental concepts in human genetics. Accounts of genetic findings involve concepts which can prove challenging. Terminology may be unfamiliar and some words have specialised meanings and may not always be used consistently. The first part aims to provide an overview of the key concepts. The subject matter is intrinsically dense and can be hard to take in, so the reader may wish to skim parts of this section and then refer back to it when necessary.
The second part shows how these concepts relate to a range of neuropsychiatric conditions. Before considering individual conditions, it is worth presenting some general principles which characterise the relationship between genetic variation and human disease, in particular in relationship to neuropsychiatric conditions. Modern research has impacted on how we think about this relationship, and so current accounts are somewhat different from what one finds in older sources.
The digenetic trematode Proctoeces maculatus is a cosmopolitan parasite that infects various invertebrates and fish hosts, including the blue mussel, Mytilus edulis, along the northeastern U.S. coast. Despite its impact on mussel fitness and the region’s aquaculture, little is known about the genetic diversity and connectivity of P. maculatus in this region. This study provides the first genetic characterization of P. maculatus populations in New England using the D1–D3 region of the 28S ribosomal RNA gene. Bayesian phylogenetic analysis and a haplotype network were used to assess genetic variation and connectivity across six localities in Maine, New York, and southern New England, and to compare these populations to global samples. Our results revealed distinct geographic structuring of P. maculatus haplotypes. The ME1 haplotype, unique to Maine, reflects either recent range expansion or isolation driven by environmental and biogeographic factors, such as Cape Cod’s role as a phylogeographic barrier. The most common haplotype, US1, was shared by populations in southern New England, New York, and a single specimen from Tunisia, indicating possible historical or anthropogenic connectivity. Two divergent haplotypes from Mississippi and Chile likely represent misidentifications or cryptic species. These findings support the hypothesis that P. maculatus is likely a cryptic species complex. Molecular evidence suggests connectivity across distant regions, emphasizing the role of host movement in parasite dispersal. Continued genetic studies, particularly from under-sampled regions, are needed to unravel the diversity and biogeography of P. maculatus and its potential impact on declining mussel populations.
This chapter briefly surveys the history of research into human settlement in the Caucasus region and outlines the book’s theses. In doing so, it acknowledges the long-standing interest in the unique languages and topography of the Caucasus region. It also surveys Caucasus research before and after the fall of the Soviet Union. It further charts the impact of anthropological genetics on our understanding of human evolutionary history; and introduces the unanswered questions about Caucasus population history.
Synthetic biology aims to create a viable synthetic cell. However, to achieve this goal, it is essential first to gain a profound understanding of the cellular systems used to build that cell, how to reconstitute those systems in the compartments, and how to track their function. Transcription and translation are two vital cellular systems responsible for the production of RNA and, consequently, proteins, without which the cell would not be able to maintain itself or fulfill its functions. This review discusses in detail how the Protein synthesis Using Recombinant Element (PURE) system and cell lysate are used to reconstitute transcription–translation in vitro. Furthermore, it examines how these systems can be encapsulated in GUVs using the existing methods. It also assesses approaches available to image transcription and translation with a diverse arsenal of fluorescence microscopy techniques and a broad collection of probes developed in recent decades. Finally, it highlights solutions for the challenge ahead, namely the decoupling of the two systems in PURE, and discusses the prospects of synthetic biology in the modern world.
DNA unzipping by nanopore translocation has implications in diverse contexts, from polymer physics to single-molecule manipulation to DNA–enzyme interactions in biological systems. Here we use molecular dynamics simulations and a coarse-grained model of DNA to address the nanopore unzipping of DNA filaments that are knotted. This previously unaddressed problem is motivated by the fact that DNA knots inevitably occur in isolated equilibrated filaments and in vivo. We study how different types of tight knots in the DNA segment just outside the pore impact unzipping at different driving forces. We establish three main results. First, knots do not significantly affect the unzipping process at low forces. However, knotted DNAs unzip more slowly and heterogeneously than unknotted ones at high forces. Finally, we observe that the microscopic origin of the hindrance typically involves two concurrent causes: the topological friction of the DNA chain sliding along its knotted contour and the additional friction originating from the entanglement with the newly unzipped DNA. The results reveal a previously unsuspected complexity of the interplay of DNA topology and unzipping, which should be relevant for interpreting nanopore-based single-molecule unzipping experiments and improving the modeling of DNA transactions in vivo.
Manipulating matter by strong coupling to the vacuum field has attracted intensive interests over the last decade. In particular, vibrational strong coupling (VSC) has shown great potential for modifying ground state properties in solution chemistry and biochemical processes. In this work, the effect of VSC of water on the melting behaviour of ds-DNA, an important biophysical process, is explored. Several experimental conditions, including the concentration of ds-DNA, cavity profile, solution environment, as well as thermal annealing treatment, were tested. No significant effect of VSC was observed for the melting behaviour of the ds-DNA sequence used. This demonstrates yet again the robustness of ds-DNA to outside perturbations. Our work also provides a general protocol to probe the effects of VSC on biological systems inside microfluid Fabry–Perot cavities and should be beneficial to better understand and harness this phenomenon.
This chapter discusses how biological components can be designed and engineered as part of a molecular communication system. Building on material given in earlier chapters, the engineering of individual biochemical components such as proteins, DNA, liposomes, and individual cells is discussed.
This chapter introduces biological concepts that are important in the remainder of the book, particularly biochemical components of natural biological “nanomachines”. Biochemical structures such as proteins, DNA, RNA, lipid membranes, and vesicles are introduced, as well as an introduction to cells is given.
This study presents the first comprehensive annotated checklist of polychaetes collected from floating dock communities across New England and adjacent New York areas, emphasizing the significance of rapid biodiversity assessment surveys in understanding marine biodiversity. With 61% of the identified species classified as cryptogenic, the research highlights the complexity of marine biogeography and the challenges of distinguishing between native and non-native species. The incorporation of DNA barcoding has significantly improved species identification and revealed the presence of cryptic species complexes. The study's findings illustrate the prevalence of tubicolous families (Spionidae, Serpulidae, Sabellidae, and Terebelllidae) that are susceptible to anthropogenic dispersal mechanisms. It also addresses the challenge posed by the high proportion of cryptogenic species, calling for enhanced taxonomic and genetic analyses to resolve their origins and ecological roles. Despite the temporal variation in polychaete composition across years, the absence of distinct community assemblages suggests a level of resilience within floating dock communities. Our study advocates for the continuation and expansion of rapid assessment surveys, coupled with the integration of genetic methodologies, to provide a clearer picture of marine biodiversity.
Suppose you are running a company that provides proofreading services to publishers. You employ people who sit in front of screens, correcting written text. Spelling errors are the most frequent problem, so you are motivated to hire proofreaders who are excellent spellers. Therefore, you decide to give your job applicants a spelling test. It isn’t hard: throw together 25 words, and score everyone on a scale of 0–25. You are now a social scientist, a specialist called a psychometrician, measuring “spelling ability.”
The reader should be officially informed that in this chapter I take leave of the widely accepted consensus about nature–nurture. This is not a textbook, and everything that I have said up to now has been very much my own take on things, but for the most part I have not strayed far from what most scientists would say about the intellectual history of nature and nurture. Not everyone perhaps, but most people agree that Galton was a racist, eugenics a moral and scientific failure, heritability of behavioral differences nearly universal, heritability a less than useful explanatory concept, twin studies an interesting but ultimately limited research paradigm, and linkage and candidate gene analysis of human behavior decisive failures.
Has it always been the case that living people must struggle with the moral failings of their dead ancestors, or is that a special burden that has been placed on the shoulders of citizens and scientists living in contemporary Europe and North America? Recently, the culture feels as though it is being torn apart by this question. I was taught in grade school that the United States is the greatest country in the world, the land of the free and the home of the brave, where anyone could be a millionaire or president if they put in the effort. It is hardly radical to recognize that this is less than true today and isn’t even close to true historically, especially if one is not white, Christian, and male.
Notwithstanding Galton’s admonition to count everything, counting is just a tool; it is no more science than hammering is architecture. One hundred years after Galton, Robert Hutchins remarked, contemptuously, that a social scientist is a person who counts telephone poles. The obvious way to turn counting into science is by conducting experiments, that is by manipulating nature and observing what the consequences are for whatever one is counting. Gregor Mendel, for example, was certainly a counter – he counted the mixtures of smooth and wrinkled peas in the progeny of the pea plants he intentionally crossed. What made Mendel’s work science was the intentional crossing of the plants, not the counting itself. It would have been much more difficult – perhaps impossible – to observe the segregation and independent assortment of traits by counting smooth and wrinkled peas in the wild.
Why is divorce heritable? It’s clear that it is heritable, in the rMZ > rDZ sense. I hope I have convinced you that the heritability of divorce doesn’t mean that there are “divorce genes,” or that divorce is passed down genetically from parents to children, but seriously: how does something like that happen? I am aware that my constant minimizing of the implications of heritability can seem as though I am keeping my finger in the dike against an inevitable onslaught of scientifically based genetic determinism, the final Plominesque realization that our genes make us who we are, the apotheosis of Galton’s proclamation in 1869: “I propose to show … that a man’s natural abilities are derived by inheritance, under exactly the same limitations as are the form and physical features of the whole organic world” (Hereditary Genius, p. 1).
Robert Plomin, whose name has come up a few times already, is unquestionably the most important psychological geneticist of our time. Trained in social and personality psychology at the University of Texas at Austin in the 1970s (my graduate alma mater, though we didn’t overlap), he went on to faculty positions at the University of Colorado and the Pennsylvania State University (both major American centers for behavior genetics) before moving to London to take a position at the Institute of Psychiatry. Plomin’s career has embodied the integration of behavioral genetics into mainstream social science and psychology. Everywhere Plomin has been, he has initiated twin and adoption studies, many of which continue to make contributions today. Although genetics has always played a central role in Plomin’s research, you would never mistake his work for that of a biologist or quantitative geneticist: he (like me) has always been first and foremost a psychologist.
The Second World War marked a turning point for what was considered acceptable in genetics and its implications for eugenic and racially motivated social policies. To be sure, the change in attitude was not quick or decisive. Tens of thousands of Americans were sterilized involuntarily after the war. Anti-black racism, antisemitism, and anti-immigrant sentiment, needless to say, persisted for a long while and have not yet been eliminated; interracial marriage was still illegal in much of the country during my lifetime. But – and despite the foot-dragging, I think this needs to be recognized as an advance – it slowly became less and less acceptable to adopt openly eugenic or racist opinions in public or to justify them based on science. Retrograde attitudes about such things persist to this day, but they have mostly been relegated to the fringes of scientific discourse.
Many people outside of psychology and biology come to the subject of nature–nurture because of an interest in race. That is unfortunate, but I get it. People, especially in the United States, are obsessed with race, for obvious reasons: American history is indelibly steeped in racial categories. The two foundational failures of the American experience – genocide of Indigenous Americans and enslavement of Africans – happened because of race and racism. Even today in the United States, people of all persuasions think about race all the time, whether as hereditarian racists convinced that there are essential biological differences among ancestral groups, progressives fascinated by personal identity and the degradations that non-white people still experience, or the dozens of racial and ethnic categories obsessively collected by the U.S. census.
Let’s summarize where the nature–nurture debate stood as the twentieth century drew to a close. When the century began, thinkers were faced for the first time with the hard evolutionary fact that human beings were not fundamentally different biologically than other evolved organisms. Galton and his eugenic followers concluded that even those parts of human experience that seemed to be unique – social, class, and cultural differences; abilities, attitudes, and personal struggles – were likewise subsumed by evolution and the mammalian biology it produced. People and societies could therefore be treated like herds of animals, rated on their superior and inferior qualities, bred to maintain them, treated to fix them, and culled as necessary for the good of the herd. Not every mid-century moral disaster that followed resulted from their misinterpretation of human evolution, but it played a role. Society has been trying to recover from biologically justified racism, eugenics, and genocide ever since.