Barnyard millet accessions (257) were inoculated with grain smut spores at anthesis stage during 2003. Seed produced on inoculated ear heads was sown in 2005 and resulting plants evaluated for ten morphological traits and grain smut incidence. The accessions were grouped into seven groups based on origin. The lowest mean grain smut incidence was recorded for advance breeding lines, while highest mean value was observed for Uttarakhand group. Genes determining grain yield and susceptibility to grain smut were at most loosely linked as evidenced by non-significant correlations between grain smut incidence and grain yield in six out of seven groups as well as whole collection. Smut resistance along with grain yield in barnyard millet can be enhanced by adopting proper breeding strategy; therefore, in segregating generations, selection should be carried out for both characters simultaneously.

Although alfalfa (Medicago sativa L.) is a leguminous herbage widely used in temperate regions as animal feed, there is not much research in tropical regions to develop cultivars adapted to these environmental conditions. The utilization of adapted cultivars with adequate management practices is important to improve productivity, quality and persistence of cultivated pastures. The objectives of this study were to verify the genetic variability among alfalfa cultivars and to rank them using mixed model methodology. A total of 35 alfalfa cultivars were evaluated in the rainy and dry seasons, from 1996 to 2000, in plots of 2.8 m2 in Sertãozinho, São Paulo, Brazil. The experimental design was a randomized complete block with three replications. Longitudinal data of dry matter yield were analyzed using PROC MIXED of SAS® System. Several covariance structures were tested and the spherical spatial structure was selected. The results show that the genetic variability was statistically significant only for the dry season. Moreover, the interaction among cultivars and harvests variance was highly significant for both seasons. The empirical best linear unbiased predictions of cultivar effects were obtained, allowing for the selection of the superior cultivars MH 15, 5715, SW 8210, Rio, High, 5888, Monarca, Victoria, Florida 77 and Falcon. Crioula, the most common cultivar in Brazil, showed low forage potential in Sertãozinho. Results indicate potential for use of more productive cultivars of alfalfa to produce animal feed in tropical environments.

Wild peanut species are useful genetic resources for improving the levels of disease/pest resistance and for enhancing the quality of seed composition by interspecific hybridization. The variation in oil content and fatty acid composition of wild peanut species in the United States Department of Agriculture germplasm collection is unknown. Seeds available from 39 wild species (plus a cultivated peanut) were requested from the U.S. peanut germplasm collection. Oil content was measured using nuclear magnetic resonance, fatty acid composition was analysed using gas chromatography, and the D150N functional mutation of the FAD2A gene was screened by real-time PCR. Significant variability in oil content (41.7–61.3%) was identified among the wild peanut species. Arachis magna contained significantly more oil (61%) than cultivated peanut (56%). There was no functional mutation identified within the FAD2A gene target, and no wild species were identified with a high ratio of oleic acid to linoleic acid. The results from gas chromatography and real-time PCR analyses were consistent. However, Arachis sylvestris contained a significantly higher amount (22%) of long-chain fatty acid (LCFA) than the cultivated peanut (4%). Thus, A.magna and A. sylvestris may be good breeding materials to use for increasing oil content or LCFA composition of cultivated peanuts in breeding programs.

To characterize five different morphological forms of Russian olive grown in Ladakh, analysis of morphometric data of different variants was performed. Statistically significant differences among these variants were found for all the fruit and seed characters studied. Results of the study indicate presence of infra-specific differentiation within the species. Morphometric data for these variants conform to the system of nomenclature prevalent in the region for these variants. The ringmo (‘long fruited’ variety) type had the longest fruits, while bee (‘small fruited’ variety) had the smallest fruits.

Pennisetum purpureum Schum. (napiergrass) is a perennial grass used for forage especially in South America and Africa. Over the last 30 years, a USDA–ARS nursery containing accessions collected from all over the world has been established in Tifton, Georgia. The study reported here was conducted to assess the molecular genetic variation and genetic relatedness among 89 accessions from the Tifton nursery using amplified fragment length polymorphism markers, morphological data and ploidy level. Using 218 polymorphic markers from eight selective primer combinations, the 89 accessions were clustered into five groups using a principal components analysis and a dendrogram based on Dice similarity estimates and unweighted pair group method with arithmetic average clustering. These five groups include three groups collected from Kenya, a group from Puerto Rico, and accessions derived from the cultivar Merkeron. This research provides the first molecular characterization of the Tifton nursery, displays the relationships between accessions, and provides potential heterotic groups for napiergrass and pearl millet (Pennisetum glaucum (L.) R. Br.) breeding improvement.

Hydrangea and Schizophragma are popular horticultural and ornamental plants. This study was designed to identify unknown accessions of Hydrangeaceae that have leaf morphological characters different from Hydrangea anomala subsp. petiolaris and Schizophragma hydrangeoides in Jeju, Korea. A total of 29 accessions of Hydrangea and Schizophragma from the wild were collected and analyzed using randomly amplified polymorphic DNA (RAPD) and single nucleotide polymorphisms (SNPs) from the ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene. Morphological characteristics of leaves and shoot apices of several accessions were also examined. Based on the RAPD markers, SNPs of the (rbcL) gene and morphological characteristics of apical buds, the unknown accessions were identified as H. anomala var. petiolaris.

Pigeonpea (Cajanus cajan (L.) Millsp.) seed harvested while it is immature is a nutritious vegetable and forms a substitute for green pea [Pisum sativum (L.)]. Using the characterization data of more than 12,000 accessions conserved at ICRISAT genebank, Patancheru, India, 105 accessions were selected for important traits of vegetable pigeonpea (mature pod length>6 cm, seeds per pod>5 and 100-seed weight>15 g) and evaluated for these traits during 2007–08. From the initial evaluation, 51 accessions were identified as vegetable type and further evaluated for traits of vegetable pigeonpea during 2008–09 to identify most promising accessions. ICP 13831 produced longest immature pods (10.3 cm), ICP 13828 had maximum number of seeds per pod (5.9) and ICP 12746 produced larger seeds (44.8 g/100 seeds). Highest percentage of total soluble sugars (9.7%) was recorded in immature seeds of ICP 13413. ICP 15143 followed by ICP 15186 recorded more dry pods per plant and seed yield per plant. Performance of ICP 12184, ICP 13413, ICP 14085 and ICP 15169 was better than that of the best control for pod length, seeds per pod, soluble sugars and protein content. Cluster analysis based on scores of first five principal components resulted in three clusters that differed significantly for days to 50% flowering, days to 75% maturity, shelling percentage and soluble sugars. Important traits of vegetable pigeonpea such as immature pod length, seeds per pod, seed soluble sugars and protein content had shown strong positive correlation. Caribbean and Eastern Africa were found as the best source regions for vegetable pigeonpea. Evaluation of selected accessions at potential locations in different countries was suggested to identify vegetable pigeonpeas suitable for different regions and for use in crop improvement programs.

Prunus avium cultivars widely used in northern Greece were investigated in terms of inter- and intra-cultivar genetic variation and DNA fingerprinting. Based on 11 simple sequence repeats loci, the average number of alleles per locus (Na = 2.82), probability of identity (PID = 0.327), polymorphic information content (0.451) and expected heterozygosity (He = 0.494) were within the range reported in similar studies. The most informative markers were BPPCT039 and EMPa018. The cultivars were clearly separated in both an unweighted pair group method with arithmetic mean dendrogram and a multivariate space ordination. Any two cultivars differed on the average at 6.30 loci. The null hypothesis of zero intra-cultivar variability was tested and could not be rejected. Two cultivars (Tragana Edessis and Tragana Sarakinon) were genetically similar, but not identical. This study, the first of its kind for sweet cherry in Greece, presents a useful molecular tool for resolving issues of intra-cultivar variability and synonimity and provides a warranty of genetic identity in the handling and management of local traditional germplasm.

Within the cultivated peanut species (Arachis hypogaea L.), there are two subspecies comprising six botanical varieties, and the effect of botanical taxon on oil content and fatty acid composition variability is unclear. To gauge the variability, 83 peanut accessions were analyzed for oil content (expressed at 0% moisture) and fatty acid composition. We found that within the subsp. hypogaea, var. hypogaea contained a much higher amount of oil in seeds than did the var. hirsuta Köhler (520 vs. 473 g/kg, P < 0.05); within the subsp. fastigiata Waldron, the vars. aequatoriana Krapov. & W.C. Gregory and vulgaris Harz contained a similar amount of oil in seeds (491 g/kg), not significantly different from other botanical varieties, but var. fastigiata contained a higher amount of oil (500 g/kg) than the var. peruviana Krapov. & W.C. Gregory (483 g/kg). In terms of the fatty acid composition, oil from seeds of var. hypogaea contained much more oleic acid than did var. hirsuta (491 vs. 377 g/kg, P < 0.05), but much less palmitic acid (97 vs. 138 g/kg, P < 0.05%) and linoleic acid (308 vs. 402 g/kg, P < 0.05). Oil from seeds of var. vulgaris contained much more oleic acid than did var. aequatoriana (437 vs. 402 g/kg, P < 0.05), but much less linoleic acid (346 vs. 380 g/kg, P < 0.05). Significant negative correlations of oleic with palmitic and linoleic acids were detected. The information on the oil content and fatty acid composition variability among botanical varieties would be useful for peanut breeders seeking germplasm containing both high oil content and proper fatty acid composition.

Genetic variation in Lactuca serriola, the closest wild relative of cultivated lettuce, was studied across Europe from the Czech Republic to the United Kingdom, using three molecular marker systems, simple sequence repeat (SSR, microsatellites), AFLP and nucleotide-binding site (NBS) profiling. The ‘functional’ marker system NBS profiling, targeting disease resistance genes of the NBS/LRR family, did not show marked differences in genetic diversity parameters to the other systems. The autogamy of the species resulted in low observed heterozygosity and high population differentiation. Intra-population variation ranged from complete homogeneity to nearly complete heterogeneity. The highest genetic diversity was found in central Europe. The SSR results were compared to SSR variation screened earlier in the lettuce collection of the Centre for Genetic Resources, the Netherlands (CGN). In the UK, practically only a single SSR genotype was found. This genotype together with a few other common SSR genotypes comprised a large part of the plants sampled on the continent. Among the ten most frequent SSR genotypes observed, eight were already present in the CGN collection. Overall, the CGN collection appears to already have a fair representation of genetic variation from NW Europe. The results are discussed in relation to sampling strategies for improving genebank collections of crop wild relatives.

Wild apricot (Prunus armeniaca L.) is an economically important fruit crop for folk and marginal farmers and local tribal populations in the high-altitude difficult terrains of north-western Himalayas in Jammu and Kashmir and Himachal Pradesh states of India. This is a multi-purpose fruit tree species which, besides its fresh edible fruits, is preserved for use in diverse ways depending upon the type of cultivar. Seed kernel of apricot is used as edible nut and for the production of edible oil. In the present study, 147 diverse accessions of wild and cultivated apricot belonging to 28 folk cultivars were collected and characterized for fruit, stone and kernel characters. Indigenous traditional uses and importance of fruits and kernels of these folk cultivars have been recorded and described. Promising table-type cultivars identified were Margulam, Lodi, Shakarpara, Narmo and Khurmani, while drying-type cultivars were Halman, Shakarpara, Rakchey Karpo and Tachu. Cultivars Chuli and Shadi were the most common types and widely distributed with vast variability, while other cultivars had localized presence. Some of these folk cultivars have high potential for promotion as commercial cultivars of apricot in this high-altitude area basically depending upon traditional production system. Genetic resource management including collection, characterization and documentation of existing variability of apricot is of immense importance for safe conservation and commercialization of potential cultivars to enhance farmer's livelihood in this fragile agroecosystem.

Taxonomy plays an essential role in genebank documentation. It is often the first level at which users search material, and it determines the protocols used in the management of collections. Especially, when plant genetic resources information is pooled in systems such as EURISCO, the European catalogue of ex situ plant genetic resources, problems regarding technical handling of taxonomic nomenclature, such as lack of standardization and low quality of data, become apparent. These problems were studied by analysing the content of EURISCO and mapping the taxon names in EURISCO on those used in the United States Department of Agriculture genebank system GRIN-Tax. Thus, the number of spelling errors and the level of standardization could be quantified and improved. An analysis of the content of EURISCO was made, showing a highly unbalanced distribution over crops: 50% of the accessions belong to ten genera only. Mapping EURISCO on the crops listed in Annex 1 of the International Treaty on Plant Genetic Resources for Food and Agriculture showed that 67% of the accessions in EURISCO belong to crops in that list.

The grain morphology of 17 wild rice relatives were studied by light and scanning electron microscopy and compared to two cultivated rice varieties (Oryza sativa cv. Nipponbare and O. sativa cv. Teqing). Observations were made of the grain colour, size and shape. Grains from wild rice species exhibited a variety of colours that have potential aesthetic and nutritional value. The grains of these species exhibited a wide array of sizes and shapes, but still fell within the standard classification scale that rice breeders use for routine breeding evaluation. These results highlight the potential of these species as whole grain foods or as sources of novel alleles in conventional rice breeding programmes.

Eryngium maritimum L. is a wild plant species threatened or endangered in most of Northern Europe, where species is on the northern margin of its distribution range. Recent studies have found reduction of size and even extinction of many populations. Assessment of genetic diversity in natural populations of endangered wild plant species can reflect condition and fitness of particular population and inform decisions on appropriate conservation measures. Application of inter simple sequence repeat markers and chloroplast DNA sequencing could not resolve genetic relationship between E. maritimum populations in Northern Europe. Therefore, the more sensitive retrotransposon-sequence-specific amplification polymorphism (SSAP) molecular marker system was developed. Six Ty1-copia long terminal repeat retrotransposons were isolated from E. maritimum genome (Tem1–Tem6) and assessed for their utility as molecular markers in this species. Two retrotransposons – Tem2 and Tem5 – were recognized as most informative based on the level of polymorphism and SSAP banding pattern quality. On average, 20.4% of SSAP bands were polymorphic for the five most informative primer combinations in a set of 150 Northern European E. maritimum plants from 13 locations, providing a useful tool for assessment of genetic diversity in this endangered species.

The morphological characterisation and data analysis of germplasm accessions of wild Portuguese Lavandula luisieri (Rozeira) Rivas-Martínez from the southern Beira Interior region of central eastern Portugal are described. The study, based on seeds and cultivated plants, was conducted in 2005, 2006 and 2008 among populations selected from four sites (I, II, III and IV). Quantitative and qualitative phenotypic data relating to a set of 35 morphological traits were analysed using canonical discriminant analysis. Genetic similarity among accessions was assessed using amplified fragment length polymorphism molecular markers. The traits contributing most to the variability among studied populations were related to plant density, leaf colour, seed weight and various spike and flower characteristics. Plant populations from each of the four test sites were statistically distinct, exhibiting unique characteristics when compared with one another; however, populations from Sites II, III and IV showed greater genetic similarity and differed substantially from the population of Site I. Altitude and temperature were found to be the most significant environmental variables influencing plant traits, yet the morphological variability of L. luisieri was also influenced by soil pH levels, suggesting that the expressed variability is not only a result of genetic characteristics but also of existing ecological conditions.

The International Crops Research Institute for the Semi-Arid Tropics (1CRISAT) genebank in India holds the world's largest collection of 21,594 pearl millet germplasm accessions from 50 countries including 6529 landraces from ten Asian countries. Gap analysis using passport and characterization data and geographical information system tools revealed 134 distinct districts of 14 provinces in India and 12 districts of Punjab province in Pakistan as the major geographical gaps. Different methods of identifying geographical gaps used in the study indicated Chittoor, Karimnagar, Nizamabad, Prakasam and Warangal in Andhra Pradesh; Raigarh in Chattisgarh; Dewas and Rewa in Madhya Pradesh; Buldana and Hingoli in Maharashtra; Malkangiri, Nabarangapur, Naupada and Sundergarh in Orissa; Bhilwara, Chittaurgarh and Kota in Rajasthan; Thiruvallur and Vellore in Tamil Nadu; and Auraiya, Chandauli, Chitrakoot, Gonda, Gorakhpur, Hamirpur, Kushinagar, Mau, Shrawasti and Sonbhadra in Uttar Pradesh as common geographical gaps in India. A total of 208 distinct districts in 12 provinces were identified as gaps in diversity for one or more traits. Among all districts, Beed, Latur and Osmanabad in Maharashtra, India, for all traits; Rajanpur, Muzaffargarh, Multan and Lodhran for panicle length and Chakwal and Sargodha for panicle width in Pakistan; and southern parts of North Yemen and Lahiz provinces in Yemen were identified as gaps in the diversity. In India, Warangal in Andhra Pradesh; Rewa in Madhya Pradesh; Hingoli in Maharashtra; Vellore in Tamil Nadu; and Auraiya, Chandauli, Chitrakut, Gorakhpur and Mau in Uttar Pradesh were identified as gaps in diversity for one or more traits and found common to geographical gaps identified. In Pakistan, Lodhran, Multan and Muzaffargarh were identified as gaps common to probability and diversity methods. Area for exploration should be decided prior to launch of the collection mission in consultation with local government officials and extension officers, who are known to have knowledge in pearl millet cultivation in the identified districts. It is suggested to collect the complete passport data including georeference information while collecting the germplasm.