An increase in oyster aquaculture as a sustainable method of shellfish production is one response to overharvest and degradation of natural oyster reefs over the past century. Successful aquaculture production requires determining the environmental conditions optimal for oyster growth. In this study, the salinity, temperature, chlorophyll a concentration and the growth of Crassostrea virginica were monitored at four locations within the Mission-Aransas Estuary, Texas (USA), a shallow subtropical estuary influenced by relatively low freshwater inflow. Mean growth of the oyster shell (0.205 mm d–1 and 0.203 g d–1) and soft tissues (3.447 mg d–1) was highest when salinity was low (mean = 15.5) and chlorophyll a concentration was high (8.4 μg l–1). Oyster growth also varied temporally with periods of spawning. In low-inflow estuaries such as the Mission-Aransas Estuary, oyster farms should be sited close to river mouths so that oysters can benefit from freshwater inflows and lower salinities.

The community composition of zooplankton with an emphasis on copepods was assessed in the frontal zones of the Indian sector of the Southern Ocean (SO) during summer 2013. Copepods were the dominant group in both the bongo net and multiple plankton sampler across the entire region. High zooplankton abundance was recorded along each transect in the Polar Front (PF). Community structure in this front was dominated by common taxa, including Ctenocalanus citer, Clausocalanus spp., Calanoides acutus, Calanus propinquus, Calanus australis and Rhincalanus gigas, which together accounted for > 62% of the total abundance. Calocalanus spp., Neocalanus tonsus and C. propinquus were indicator species in the Sub-Tropical Front (STF), Sub-Antarctic Front and PF, respectively. A strong contrast in population structure and biovolume was observed between then PF and the STF. The community structure of smaller copepods was associated with the high-temperature region, whereas communities of larger copepods were associated with the low-temperature region. Thus, it seems probable that physical and biological characteristics of the SO frontal regions are controlling the abundance and distribution of zooplankton community structure by restricting some species to the warmer stratified zones and some species to the well-mixed zone.

The rocky intertidal communities of Ireland contain a mix of cold- and warm-adapted species, however the spatial distribution of these communities has not been investigated in a systematic way. Based on a benthic community dataset collected in 2003 at 63 sites, several statistical analyses were combined with the aims of (i) detecting groups of similar communities and their spatial arrangement, (ii) relating these groups to environmental factors and (iii) identifying the species that drive the different community groups. Sørensen's index suggested two marine community groups, one of the east and south-east (termed ‘east’) and the other in the west, south-west and north (termed ‘west’). A second partition based on combined wave exposure and sea surface chlorophyll comprised four groups, as did a further partition based on combined sea surface and air temperatures. The spatial arrangement of wave height plus chlorophyll conditions agreed reasonably well with the binary marine community partition, but the temperature partition did not. The ‘east’ community appeared to be associated with low wave height and chlorophyll conditions. The species that were most influential to the ‘east’ community were Balanus crenatus, Austrominius modestus and Fucus vesiculosus. The ‘west’ sites were associated with high wave height/low chlorophyll (with some variation in this due to local shelter) and the species Paracentrotus lividus, Chthamalus stellatus, Alaria esculenta and Himanthalia elongata. A longitudinal pattern rather than one associated with latitude was evident in this marine community and local drivers rather than temperature clines appeared most important for the dominant community patterns.

In this work, the photosynthesis model presented by Avila et al. in 2013 is extended and more scenarios inhabited by ancient cyanobacteria are investigated to quantify the effects of ultraviolet (UV) radiation on their photosynthetic potential in marine environments of the Archean eon. We consider ferrous ions as blockers of UV during the Early Archean, while the absorption spectrum of chlorophyll a is used to quantify the fraction of photosynthetically active radiation absorbed by photosynthetic organisms. UV could have induced photoinhibition at the water surface, thereby strongly affecting the species with low light use efficiency. A higher photosynthetic potential in early marine environments was shown than in the Late Archean as a consequence of the attenuation of UVC and UVB by iron ions, which probably played an important role in the protection of ancient free-floating bacteria from high-intensity UV radiation. Photosynthetic organisms in Archean coastal and ocean environments were probably abundant in the first 5 and 25 m of the water column, respectively. However, species with a relatively high efficiency in the use of light could have inhabited ocean waters up to a depth of 200 m and show a Deep Chlorophyll Maximum near 60 m depth. We show that the electromagnetic radiation from the Sun, both UV and visible light, could have determined the vertical distribution of Archean marine photosynthetic organisms.

Lipid biomarkers are potential tools for identifying the sources, diagenesis and reactivity of organic matter (OM) in marine systems, including in Antarctica where the particular environmental characteristics have motivated several studies of organic markers. Sedimentary sterol distributions were determined in two sediment cores (PGI-1 and PGI-2) collected from the marine environment around Penguin Island, Antarctica, during the 2007–08 summer. The cores were sectioned at 1 cm intervals and the sterols were analysed using gas chromatography with flame ionization detection. The results indicate that the sterols were subjected to decades of degradation and transformation with depth in both cores. However, an expected progressive conversion of stenols to stanols (evaluated by 5α-stanols/Δ5-stenols ratio) within the deepest sediment layers was not clear, suggesting low degradation rates. In PGI-1, the deposition of large quantities of penguin guano affected the distribution of sterols and, consequently, primary production was favoured by the ornithogenic soil input. The results contribute to the understanding of the current processes associated with primary sources and transformation of OM in this important region of the Antarctic environment.

Meltwater ponds are important biodiversity elements in continental Antarctica. Many occupy closed basins and are vulnerable to changes in the balance between water accrual, through melting of ice and snow, and water loss by ablation and evaporation. We use a two-decade long record of ponds on the McMurdo Ice Shelf to assess temporal variability in key limnological variables. Ponds underwent many-fold change in biologically conservative variables, such as conductivity, and changes were similar in ponds from different catchments but of comparable area. In contrast, biologically active variables (pH, inorganic nutrients and planktonic/benthic biomass) are buffered by in-pond processes and show consistency between years and no coherence across catchments. Coherent behaviour across catchments implies an overarching, climatic effect. However, we could identify no signature of summer air temperature or irradiance in pond dynamics, although winter snow deposition may leave a legacy of low conductivity to the following summer. While ponds are clearly affected by climate, our data show that ecosystem responses are complex and highlight the need for system-appropriate, long-term observation if directional environmental change is to be separated from inherent variability in systems that respond to multiple climatic variables and which have significant biological buffering capacity.

Nowadays it is well accepted that background aerosols in the boundary layer over remote oceans are of marine origin and not aged continental. Particularly in the Atlantic sector of the Southern Ocean at least four main important regions exhibit significant ocean primary productivity. They are the Bellingshausen–Amundsen Sea, the Weddell Sea, the southern Argentinean shelf and the southern Chilean coast. In this work, we have combined ground-based continuous atmospheric sampling of aerosol number concentration (ANC), over-sea dimethyl sulphide (DMS) measurements, chlorophyll a (chl a) concentration provided by Sea-viewing Wide Field-of-view Sensor (SeaWiFS) satellite images, in situ meteorological data and monthly regional NCEP-NCAR re-analysis wind fields in order to investigate the relative contribution of each of the above regions to the apportionment of the ANC at King George Island (KGI), South Shetland Islands. Our results suggest that, at least during the period from September 1998–December 1999, the southern Argentinean shelf acted as the main contributor to the ANC measured in KGI.

The responses of the nitrophytic green algal lichen Xanthoria parietina to varying nitrogen (N) concentrations were investigated by collecting 67 X. parietina thalli from clay roof tiles from 13 sites in Portugal with different exposures to N. Concentrations of total N, chlorophyll a (a marker for the photobiont), ergosterol (a marker for the mycobiont), and thallus specific weight (TSW; thallus dry weight in relation to surface area) were quantified for each thallus to see how biont investments were related to thallus N concentrations. Thallus N ranged from 11 to 43 mg g−1 DW revealing a wider N concentration range in this lichen compared to other green algal lichen species. Both chlorophyll a and ergosterol concentrations increased with increasing thallus N, with a steeper increase of the photobiont marker. TSW was similar in all thalli without any significant effect of thallus N concentration, suggesting that thallus developmental patterns are similar in low and high thallus N concentrations. The relatively higher resource allocation to the photobiont in relation to the mycobiont with increasing thallus N concentrations is an indication of the capacity of X. parietina to meet the C demands associated with N assimilation. This result is also in agreement with the inter-specific resource allocation pattern for green algal lichens across the same N concentration range.

Two shallow ponds at Cape Evans, Ross Island, were sampled at 1–2 week intervals, during winter freezing throughout the winter and during the subsequent melt period, to examine the physical and chemical conditions imposed on the biota during the year. Liquid water was first detected at the base of the ponds in late December. During the main summer melt period conductivities were less than 10 mS cm−1 with maximum daily temperatures around 5°C. The bottom waters became increasingly saline during freezing and water temperatures decreased below 0°C; by June the remaining water overlying the sediments had conductivities >150 mS cm−1 and temperatures of −13°C. Calcium carbonate, then sodium sulphate precipitated out of solution during early freezing. The dominant nitrogen species was dissolved organic-N which reached 12 g m−3 in Pond 1 just prior to final freeze up. The organic and inorganic forms of nitrogen and dissolved reactive phosphorus increased with increasing conductivity in the ponds. The behaviour of particulate-N and particulate-P mirrored that of chlorophyll a with a peak in March-April and a second higher peak just before final freeze-up. This study provides clear evidence that organisms which persist throughout the year in Antarctic coastal ponds must be capable of surviving much more severe osmotic, pH, temperature and redox conditions than those measured during the summer melt. Deoxygenation, pH decline and H2S production, however, point to continued respiratory activity well into the dark winter months.

Studies in a large (30000 km2) sampling grid around Elephant Island, Antarctica, during January–March of four successive years (1990–1993) have shown that one of the water types within the sampling area (Drake Passage water) shows low chlorophyll a in surface waters and a subsurface maximum between 50 and 80 m depth. Ancillary data (beam attenuation, in situ chl a fluorescence) support the view that the extracted chl a values actually do represent increased phytoplankton biomass at depth; other data (oxygen concentrations and upwelling radiance at 683 nm) suggest that the phytoplankton within this subsurface maximum layer are photosynthetically active and do not represent a senescent, sinking population of cells. Such deep chl a maxima were found only in Drake Passage waters; in the other four water types sampled, chl a concentrations were maximal in surface waters and decreased with depth. Phytoplankton biomass and activity in Drake Passage waters is suggestive of a nutrient limitation for phytolankton growth in surface waters. Nutrient concentrations of N, P, and Si were high throughout the euphotic zone at all stations, and hence it is unlikely that any macronutrient would be limiting. The data presented in this paper support the hypothesis of Martin and colleagues that availability of Fe may limit phytoplankton biomass in pelagic Antarctic waters, but not in coastal waters where Fe concentrations are relatively high. All other reports on the effects of Fe on Antarctic phytoplankton have utilized deck incubations from which it is difficult to extrapolate such evidence of nutrient limitation to in situ conditions. Our data represent the first in situ evidence linking Fe limitation to the paradox of high macronutrient concentrations and low phytoplankton biomass in Antarctic pelagic waters.

Temporal and spatial variations of the epilithic phycoflora were studied in one of the largest streams at Hope Bay (Antarctic Peninsula) during the summer of 1992/93. A complete floristic inventory was made, and the relative frequencies of each algal taxon were estimated. Periphytic cumulative chlorophyll a was measured by means of artificial substrata. The stream was a typical maritime Antarctic lotic ecosystem, with evident signs of enrichment by sea-birds. Variability in discharge strongly affected the water chemistry, with the high water level periods characterized by the lowest conductivities and dissolved reactive phosphorus concentrations. Epilithic algal communities predominantly consisted of algal mats or filamentous and foliose forms of Prasiola crispa. Other dominant species were Leptolyngbya fragilis, Hydrurus foetidus, Chrysococcus cf. rufescens and Phaeogloea mucosa. Whereas P. crispa appeared more frequently near to the origin of the stream in Boeckella Lake, Chrysophyceae were better developed towards the mouth.

The aim of this investigation was to determine the NH4Cl concentration threshold, above which negative physiological effects would occur in the nitrophytic lichen Xanthoria parietina. Over a 10 month period, X. parietina thalli growing on roof tiles were exposed weekly to NH4Cl concentrations of 0·04, 0·17, 0·34 or 0·69 M. Nitrogen (N) uptake from ammonium and the concentrations of total thallus N and biont markers (chlorophyll a, ergosterol and chitin) were measured on four occasions, over the experimental period. Xanthoria parietina was able to assimilate a significant quantity of the applied ammonium. However, lichens exposed to the two higher concentrations suffered damage to both the photobiont and the mycobiont, as evidenced by reduced chlorophyll a and ergosterol concentrations, while lichens exposed to the two lower concentrations showed no significant changes in either chlorophyll a or ergosterol that could be related to the ammonium inputs. Xanthoria parietina tolerated a weekly irrigation of at least 0·17 M NH4Cl, corresponding to an N deposition of c. 1000 kg ha−1 yr−1, suggesting that this species has a very high tolerance to N pollution.

Microphytobenthos are the major intertidal primary producers in many estuarine systems and assessment of their biomass is essential in ecological studies. Algal biomass can be assessed by the use of proxy measurements, e.g. chlorophyll a (Chl a), using a lengthy and destructive extraction procedure. Fluorescence is a non-destructive and in situ alternative, recently applied to microphytobenthos, using the minimum fluorescence signal (Fo) as a measurement of Chl a. In this study, Fo after 15 min of dark adaptation (Fo15) showed a significant positive correlation with Chl a (r = 0.84, p<0.001, n = 24). The relationship between Fo15 and Chl a extracted from sediment samples of increasing sample depth (0.2–2 mm) became less significant as sediment depth increased. The strongest relationship between Fo15 and Chl a, expressed as concentration (mg m−2) and content (mg kg−1), was found when all data were combined, but nearly comparable levels of association were found for in situ measurements using sediment cores up to 2.0 mm deep. Results suggested that full dark adaptation was not always achieved because a significant negative correlation was observed between Fv/Fm and ambient irradiance for seasonal data. In addition, Fo15 showed a more significant correlation with Chl a than with Fm15, suggesting some residual level of non-photochemical quenching after 15 min in the dark. Despite the incomplete dark adaptation, the highly significant relationships between Fo15 and both Chl a concentration and content suggest that the use of Fo15 is a suitable in situ proxy method of estimating algal biomass.

L'interdépendance de la lumière et de la température a été étudiée, sur une culture non axénique de Microcystis aeruginosa, isolée de la retenue eutrophe El Kansera. Les expériences ont été réalisées dans une plage de température de 15 à 30 °C et des lumières comprises entre 5 et 500 μE. m- 2. s-1 , sous une photopériode de 15/9. Le taux de croissance maximal (μmax = 0.92 j- 1 ) a été obtenu, en culture batch sans bullage, sous une température de 20 °C (± 1°C) et une lumière optimale (Iopt) de 115 μE.m-2.s-1. Le suivi de la culture de cette espèce, sous des conditions de lumière et de température suboptimales et dans des conditions non limitantes en nutriments, montre que les deux paramètres utilisés pour l'estimation de la biomasse (chlorophylle a et densité optique) présentent une bonne corrélation (r2 = 0.98). Une carence en nutriments (N, P) induit une diminution des teneurs en pigments cellulaires, beaucoup plus marquée dans le cas de l'azote. Les réserves intracellulaires et les capacités de stockage des nutriments N et P (quotas internes en azote et phosphore) ont été déterminées expérimentalement. Les résultats obtenus montrent que cette cyanobactérie est capable de stocker beaucoup plus de phosphore que d'azote et que les teneurs en chlorophylle a évoluent en relation avec le niveau de carence.

Cette étude d'écophysiologie a été réalisée sur l'huître japonaise (Crassostrea gigas) cultivée en baie de Marennes-Oléron (France) en mai 1992. Les mesures sont effectuées dans des conditions alimentaires naturelles au cours de trois cycles de mesure (a, b, c) à des coefficients de marée de 49,57 et 88. La matière particulaire totale est mesurée en continu durant les cycles de marée. La fonction de consommation est calculée selon une nouvelle formulation prenant en compte un "échappement particulaire" précédant le tri pré-ingestif et représentant une perte passive de particules de petites tailles entraînées par la masse d'eau à travers le filtre branchial. La comparaison des fonctions de consommation et d'absorption de la matière organique totale et de la chlorophylle a, montre des différences significativement supérieures pour la charge particulaire de 55 mg.l−1 (c) comparée aux autres conditions (a, b) de charges particulaires inférieures à 30 mg.l−1. La comparaison des coefficients de sélectivité et des taux d'absorption de la chlorophylle a, (43,3 et 81,6 %), respectivement, supérieurs à ceux de la matière organique totale (33,4 et 68,7 %),respectivement, montre le tri de la matière organique effectué par l'huître. Le bilan énergétique calculé prend en compte le matériel d'origine phytoplanctonique et le matériel organique total. Les potentiels de croissance ainsi obtenus de 0,88-11,60 et 47,60 J.h−1.g−1 respectivement pour les conditions à 13,5–28,9 et 54,6 mg.l−1 de charge particulaire totale, traduisent une forte variabilité journalière d'énergie disponible pour la production organique dans le milieu naturel. Ces résultats sont cohérents avec les résultats de croissance d'huîtres en élevage dans la baie de Marennes-Oléron.