Nematodes in the order Rhabditida, including species of Strongyloides and Pelodera, may be parasites of domestic animals. In this paper, we describe two apparent cases of rhabditid infections, one in a dog and one in a litter of piglets. The dog infection was originally considered likely to be an infection with Strongyloides, based on superficial morphological examination and PCR results without sequencing. However, more careful morphological analysis and inclusion of several molecular analyses, including sequencing, revealed that an infection with Pelodera sp. was more likely, probably Pelodera pseudoteres. Treatment with fenbendazole and selamectin was apparently successful. Similarly, based on both morphological and molecular analyses the apparent piglet infections were considered most likely to be with Rhabditis spp., possibly Rhabditis axei. The detection of larvae of nematodes in the order Rhabditida in fecal samples, particularly from dogs, may easily be considered as being indicative of Strongyloides infection. Given the zoonotic potential of canine Strongyloides, correct diagnosis is important. However, as illustrated by these two cases, careful morphological examination and measurement, supported by full molecular investigations, including sequencing, are essential in order to avoid this misdiagnosis.