Specimen samples of Crook County montmorillonite and Silver Hill illite, purified and prepared in the Na-form, were imaged under 80% relative humidity using an atomic force microscope. The direct images showed clearly the hexagonal array of hexagonal rings of oxygen ions expected for the basal planes of 2:1 phyllosilicates. Fourier transformation of the digital information obtained by the microscope scanning tip led to an estimate of 5.1 ± 0.3 Å for the nearest-neighbor separation, in agreement with the ideal nearest-neighbor spacing of 5.4 Å for hexagonal rings as derived from X-ray powder diffraction data. The atomic force microscope should prove to be a useful tool for the molecular-scale resolution of clay mineral surfaces that contain adsorbed macromolecules.

Three methods were developed that allow for the imaging of any clay mineral in aqueous solutions with atomic force microscopy (AFM). The methods involve fixing the particles onto special substrates that do not complicate the imaging process, but hold the particles sufficiently so that they do not move laterally or float away during imaging. Two techniques depend on electrostatic attraction under circumneutral pH conditions, between the negatively charged clay particles and the high point of zero charge substrate (either aluminum oxide or polyethyleneimine-coated mica) whereas the third technique depends on adhesion to a thermoplastic film. The first electrostatic technique involves a polished single crystal α-Al2O3 (sapphire) substrate. This was used successfully as a substrate for clay-sized minerals with high permanent layer charge localized on the basal planes (phlogopite and vermiculite) and when the AFM was operated in TappingMode to limit the lateral forces between the probe tip and the particles. However, electrostatic attraction between the sapphire surface and clay minerals such as smectite and kaolinite (low or no permanent layer charge) is not sufficiently strong to adequately fix the particles for imaging. The second electrostatic technique involves a polyethyleneimine-coated mica surface designed to immobilize a larger variety of clay minerals (phlogopite, vermiculite, montmorillonite, and kaolinite), and in this technique weak bonding between the clay and the organic film is also a factor. The third technique, which does not depend on electrostatic attraction, fixes clay particles into the surface of a thermoplastic adhesive called Tempfix. This has proven useful for fixing and imaging relatively large clay particles with well-defined morphology. The Tempfix mount also requires imaging in TappingMode because the Tempfix is relatively soft.

Redox and acid-base reactions play important roles in the fate of metal contaminants in soils and sediments. The presence of significant amounts of Cr, Pb and other toxic heavy metals in contaminated soils and sediments is of great environmental concern. Oxidation states and dissolution characteristics of the heavy metals can exert negative effects on the natural environment. Atomic force microscopy (AFM) was used to follow the changes in morphology and structure of reaction products of Cr and Pb formed on mineral surfaces. Nitrate salts of Cr(III) and Pb(II) were used to replace the native exchangeable cations on muscovite and smectite surfaces and the metal-mineral systems were then reacted at different pH's and redox conditions.

For Pb, aggregate morphological forms were found at pH 6.1 and 12.4. At pH 6.1, the mean roughness value was 0.70 nm, and at pH 12.4 it was 5.30 nm. The fractal dimensions were 2.03 at pH 6.1 and 2.05 at pH 12.4. For Cr(III), both layered and aggregate morphological forms were found at pH 6.8 and 10.8. The mean roughness values were 0.90 nm at pH 6.8 and 4.3 nm at pH 10.8. Fractal dimensions for both were 2.00. The effect of redox conditions on morphological characteristics was studied on a smectite substrate. The reduced clays were more compacted than oxidized ones and the reduced clay could reduce Cr(VI) to Cr(III), forming new minerals on the surfaces.

A geochemical equilibrium model, MINTEQA2, was used to simulate the experimental conditions and predict possible reaction products. Simulation results agreed well with data from experiments, providing evidence that modeling can provide a useful “reality check” for such studies. Together, MINTEQA2 and AFM can provide important information for evaluating the morphologies and chemical reactivities of metal reaction products formed on phyllosilicate surfaces under varying environmental conditions.

In this paper atomic force microscopy-studies are reported suggesting the existence of vicinal faces on the (100) plane of artificially grown goethite. Goethite crystals are commonly regarded to have boundary planes of (100), (010) and (001) faces. In contradiction to these theoretical models TEM and SEM images exhibit (110) and (021) faces to be dominating. These goethite particles consist of many crystallographic coherent domains so that the existence of dislocations on the surfaces has to be assumed. These sites on the surfaces may serve as a nucleation site for the formation of steps. The vicinal faces on the (100) face found with the AFM are (021) faces. They influence the growth velocity of the (100) face to such a degree, that this face vanishes and only (110) faces remain as stable boundary surfaces. The (021) faces are also stable, but have the highest growth rate among the faces considered.

Nanomorphological structure of well-crystallized Georgia and poorly crystallized North Queensland kaolinite particles have been compared using field emission scanning electron microscopy (SEM) and atomic force microscopy (AFM). In general, there is good agreement in information from the 2 very different imaging techniques. AFM gives more detailed information on step and ledge dimensions, microvalleys and crystallographic orientation of irregularities on basal planes and edges of the crystallites. There are major differences in nanomorphology and surface structure between the 2 kaolin samples with the Georgia kaolin showing 200–500-nm, relatively flat basal planes with some cascade-like step growth 50–100 nm wide. The edges, apparently flat and right-angled in SEM images, appear beveled in AFM images due to artifacts from the aspect ratio of the AFM tip. The North Queensland kaolinite has much more complex surface structure with anhedral crystallites attached to larger particles, high density of steps and nm-scale irregularities (often crystallographically directed). The additional step edge site contribution from the attached crystallites is estimated as a minimum of 6%, giving a total edge contribution above 30% of the kaolinite total surface area. These structures will generate a substantial pH-dependent charge across the surfaces of the North Queensland kaolinite platelets. An idealized, uniform, pH-independent, negatively charged basal plane cannot be assumed from these structures. There is also some evidence, from both SEM and AFM images, of curvature in the thinner, poorly ordered structures of the North Queensland kaolinite particles.

A hydrothermally altered rhyolitic hyaloclastite from Ponza island, Italy, has four alteration zones with unique clay assemblages: (1) a non-pervasive argillic zone characterized by smectite; (2) a propylitic zone with interstratified illite-smectite (I-S) containing 10–85% illite (I); (3) a silicic zone composed of I-S with ≥90% I and pure illite; and (4) a sericitic zone with I-S ranging from 66% I to pure illite. Atomic force microscopy reveals abrupt changes in particle morphology with illitization, including initial changes from anhedral plates to laths and then to euhedral plates and hexagonal plates. I-S particles progressively thicken with illitization and mean particle area (basal plane) remains constant from pure smectite to I-S with 80% I. However, particle area increases from 90 to 100% illite. Computer modeling of I-S structural forms indicates octahedral cation ordering progressively changes from cis- vacant smectite to interstratified cis- and tnuis-vacant I-S, and then to trans-vacant illite. In addition, polytypes progressively change from 1 Md to 1M, and then to 2M, illite. Electron-microprobe and X-ray fluoresence analyses show that I-S chemistry progressively changes during illitization, evolving toward a phengitic composition with ∼0.89 fixed interlayer K+ per O10(OH)2. Octahedral Mg2+ shows little change with illitization, varying from 0.3 to 0.5 cations per O,10(OH)2. The layer charge of smectite is ~0.38 equivalents per O10(OH)2.

On the basis of abrupt changes in morphology and progressive changes in polytype and chemistry, smectite illitization on Ponza involved a dissolution and recrystallization mechanism with multiple stages of nucléation and crystal growth. In this multi-step model, temperature of alteration provided the major control for the layer composition, polytype, and morphology of I-S crystallites. Other factors that may play a secondary role include: K+ availability, water-rock ratio, and permeability. Alternatively, the mechanism of I-S and illite formation at Ponza and other hydrothermal environments may occur by direct precipitation of I-S crystallites from rhyolite glass and may not involve progressive reactions of smectite precursors.

The aim of this work was to study the influence of tannate concentration (tannic acid/Al molar ratio [R] of 0.01–0.1), pH (5.0 and 8.0), order of aluminum, hydroxyl, and tannate addition, and prolonged ageing at different temperatures (10 months at 50°C and 5 y at room temperature and further ageing for 3–15 days at 140°C) on the nature and crystallinity of synthetic boehmite. Tannate facilitated the formation of boehmite relative to Al(OH)3 polymorphs when coprecipitated with Al and also when added to Al(OH)x phases already formed at pH 4.5 or 8.0. However, the organic ligand was more effective in preventing or perturbing the growth of the crystals of boehmite when coprecipitated with Al than when added to soluble Al(OH)x species or preformed Al precipitates. Boehmite aged at temperatures ⩽50°C typically showed a fibrous morphology. Crystals with a rhombic habit were observed in some treatments after ageing at 140°C. Significant amounts (15–30% C) of tannate were present in the precipitates after prolonged ageing. This tannate was only partly (<50%) oxidized by repeated treatments with H2O2. With further ageing at 140°C, the crystallite size of selected samples increased only slightly, suggesting that much of the remaining tannate was present in the internal structure of these samples and not simply adsorbed to their surfaces. Atomic force microscopy observation showed the presence of globular nanoparticles (probably Al tannate precipitates) attached to the elongated crystals of boehmite. Taken together, our results demonstrate that the crystalline phases that formed under mild conditions in the presence of low concentrations (R = 0.01) of foreign ligands have the same structure as boehmite, but with a poorly ordered and defective ion arrangement. At higher ligand concentrations (R ⩾0.05), mixtures of materials are formed having varying degrees of order, particle size and morphology.

The transformation process between palygorskite and smectite was studied by examining the morphological and structural relationships between these two minerals in an assemblage from the Meigs Member of the Hawthorne Formation, southern Georgia. Studied samples were related to an alteration horizon with a tan clay unit above and a blue clay unit below. Atomic force microscopy (AFM) and transmission electron microscopy (TEM) were used to study the mechanism of transformation.

From AFM data, both clay units contain euhedral palygorskite fibers. Many fibers are found as parallel intergrowths joined along the [010] direction to form ‘raft-like’ bundles. Degraded fibers, which are common in the tan clay, have a distinctly segmented morphology, suggesting a dissolution texture. Many of the altered palygorskite fibers in the tan clay exhibit an oriented overgrowth of another mineral phase, presumably smectite, displaying a platy morphology. This latter mineral forms along the length of the palygorskite crystals with an interface parallel to {010} of the palygorskite. The resulting grain structures have an elongate ‘wing-like’ morphology.

Imaging by TEM of tan clay material shows smectite lattice-fringe lines intergrown with 2:1 layer ribbon modules (polysomes) of the palygorskite. These features indicate an epitaxial overgrowth of smectite on palygorskite and illustrate the structural relationship between platy overgrowths on fibers observed in AFM data. The epitaxial relationship is described as {010} [001] palygorskite ‖ {010} [001] smectite.

Energy dispersive spectroscopy indicates that the smectite is ferrian montmorillonite. Polysomes of palygorskite fibers involved in these textures commonly vary and polysome widths are consistent with double tetrahedral chains (10.4 Å), triple tetrahedral chains (14.8 Å), quadruple tetrahedral chains (21.7 Å) and quintuple tetrahedral chains (24.5 Å).

The transformation of palygorskite to smectite and the resulting intergrowths will cause variations in bulk physical properties of palygorskite-rich clays. The observation of this transformation in natural samples suggests that this transformation mechanism may be responsible for the lower abundance of palygorskite in Mesozoic and older sediments.

Montmorillonite dissolution under highly alkaline conditions (pH = 13.3; I = 0.3 M) was investigated by bulk dissolution methods and in situ atomic force microscopy (AFM). In bulk dissolution experiments, initial SiO2 concentrations were high, and a steady state was reached after 136 h. The dissolution rates derived from the edge surface area (ESA) at the steady-state condition at 30, 50 and 70°C were 3.39 x 10−12, 1.75 × 10−11 and 5.81 × 10−11 mol/m2 s, respectively. The AFM observations were conducted under three conditions: (Run I) short-term in situ batch dissolution at RT; (Run II) long-term in situ flow-through dissolution at RT; and (Run III) long-term batch dissolution at 50°C. The observed reductions in montmorillonite particle volume for Runs I and II were due primarily to edge-surface dissolution. The ESA-based dissolution rate for Run I (10−9 mol/m2 s) was three orders of magnitude faster than that for Run II (10−12 mol/m2 s). The rate obtained for Run II corresponded to the rate at the steady-state conditions in the bulk dissolution experiments. A small number of etch pits developed in Run III slightly increased the ESA of montmorillonite since most of the montmorillonite particles were separated into monolayers lacking three-dimensional periodicity. The ESA-based dissolution rate for Run III was 2.26 × 10−11 mol/m2 s. Dissolution rates based on long-term AFM observations could be directly compared with steady-state rates obtained from bulk dissolution experiments. The AFM observations indicated that dissolution occurred at edge surfaces; therefore, the ESA should be used to calculate the dissolution rate for montmorillonite under alkaline conditions. Dissolution rates of individual particles with different morphologies estimated by AFM were similar to rates estimated from bulk dissolution experiments.

Octadecylamine (ODA) was used to intercalate a fine-grained and a coarse-grained fraction of natural Mg-vermiculite (VER) using a low-temperature melting procedure. Mixtures of Mg-vermiculite fractions and powdered ODA in the molar ratios of 2:1, 1:1, 1:2 and 1:6 were homogenized and heated for 1, 3, 15 and 30 h at 80°C to prepare intercalated samples. X-ray powder diffraction analysis of intercalated samples was combined with molecular modeling to investigate their interlayer structure. Significant amounts of non-intercalated vermiculite and diffuse peaks with very low intensity and basal spacings close to 29 Å were identified when the lowest concentration (molar ratio VER:ODA = 2:1) was used. According to molecular modeling, this indicates the initial stage of a one-layer arrangement of distorted ODA molecules in the interlayer. If the concentration of ODA molecules and treatment time were increased, a two-layer arrangement of ODA molecules with a different ODA chain-disorder and interlayer-space saturation was identified. Interlayer ODA molecules were inclined to the vermiculite basal plane with an inclination angle for two-layer arrangements that ranged from 76 to 95°. Experimental basal spacings with these two-layer arrangements varied from 52 to 58 Å and were in agreement with molecular modeling results. A fully-saturated 58 Å two-layer ODA arrangement was identified when higher ODA concentrations (VER:ODA = 1:2 and 1:6) and 15 and 30 h treatment times were used. There was no significant difference between ODA-intercalated samples prepared using fine-grained and coarse-grained Mg-vermiculite fractions. A grafted ODA-chain nano-layer with a 49.6(2.1) Å average height was observed on the surface of thin ODA-intercalated micro-flakes using atomic force microscopy. Grafted ODA chains not only created an homogeneous surface nano-layer, but also variable-width channels between the ODA molecules.

Apophyllite, a hydrous K-Ca-phyllosilicate, reacts with acidic aqueous solutions at room temperature. Various analytical methods have been applied to study the mechanism of the reaction and its characteristics, i.e. the changes in chemical composition, modifications in crystal structure and alterations in surface morphology. In contact with acidic solution, protonation of the terminal, non-bridging oxygen at the silicate tetrahedra takes place and the interlayer cations K+ and Ca2+ are removed. The protonation and ion removal causes the interlayer spacing to increase. Atomic force microscopy shows that the increase takes place discontinuously and, therefore, reflects a discontinuous reaction that comprises a two- or three-step protonation. Additionally, three structurally different protonation sites have been detected by nuclear magnetic resonance spectroscopy which also differ in the amount of close-by hydrogen, although in pristine apophyllite all terminal oxygen positions at silicate tetrahedra are structurally equivalent. In many clay minerals such structurally different protonation sites have not been detected so far. Thus, the multi-step protonation process in apophyllite clearly demonstrates the vast sensitivity of the protonation reaction on small structural variations in phyllosilicates.

Chlorite is a layered silicate mineral group of importance in geology, agriculture, and in the processing of mineral resources. A more detailed analysis of the surface charge of chlorite minerals is important in order to improve our fundamental understanding of such particle structures and their behavior in suspension. In this study, the anisotropic surface charging of chlorite has been established using Atomic Force Microscopy surface-force measurements with a silicon nitride tip. The surface-charge densities and surface potentials at the chlorite basal-plane surfaces and edge surface were obtained by fitting force curves with the Derjaguin-Landau-Verwey-Overbeek theoretical model. The results show that at pH 5.6, 8.0, and 9.0 the chlorite mica-like face is negatively charged with the isoelectric point (IEP) less than pH 5.6. In contrast, the chlorite brucite-like face is positively charged in this pH range and the IEP is greater than pH 9.0. The surface charging of the chlorite edge surface was found to be pH-dependent with the IEP occurring at pH 8.5, which is slightly greater than the edge surfaces of talc and muscovite due to the larger content of magnesium hydroxide at the chlorite edge surface. Findings from the present research are expected to provide a fundamental foundation for the analysis of industrial requirements, e.g. collector adsorption, slime coating, and particle interactions in the area of mineral-processing technology.

The dissolution of brucke, Mg(OH)2, on the (001) surface was investigated using in situ atomic force microscopy in solutions at near-neutral pH. Dissolution proceeded by the formation of crystallographically oriented triangular etch pits with monolayer step and expansion of the pits. The sides of the triangle are parallel to the [100], [110] and [010] directions of the brucite structure, and the orientation of lines from the center of the triangle to the three apices are along the [210], $[\overline{1}10]$$[\bar 110]$ and $[\overline{1}\overline{2}0]$$[\bar 1\bar 20]$ directions. This orientation may produce pit edges where OH groups coordinate to two Mg2+. Although triangular etch pits with monolayer depth formed mostly at random on the (001) surface, concentric pits penetrating several layers were also observed. Etch pits with spiral steps were rarely observed. Coalescence of the pits resulted in stranded terraces that diminished in size rapidly and formed a rounded irregular form. The step-retreat velocity around the triangular pit is 0.015–0.04 nm/s at pH 5–8. The retreat velocity around the stranded terraces was about three times more rapid than that around the triangular etch pits.

The kinetics of cation exchange in phlogopite have been studied in situ by hydrothermal atomic force microscopy (HAFM). The exchange of interlayer K by octylammonium ions caused an increase in the interlayer distance and the formation of reaction fronts which can be locally resolved by AFM. The observed reaction fronts revealed substantial variations in their propagation rates — even within single interlayers. This observed variability in interlayer reactivity could mainly be attributed to chemical and structural inhomogeneities of the samples. A quantitative evaluation of the front propagation at representative sites yielded a diffusion coefficient of the K+ exchange by octylammonium of 1.2±0.6 × 10−11 cm2/s assuming negligible transport normal to the layers. The reverse reaction, i.e. the exchange of organic ions by K+, resulted in a retreat of the reaction fronts and a general restoration of the original morphological state. However, indications of structural alterations and areas with trapped octylammonium ions were found.

Nine halloysite nanotubes (HNTs) have been examined using scanning electron microscopy (SEM), atomic force microscopy (AFM) and (cross-sectional) transmission electron microscopy (TEM) to evaluate details of their external and internal morphologies. The samples span morphologies within the cylindrical to prismatic-polygonal framework proposed by Hillier et al. (2016). The ‘carpet roll’ model assumed in the conceptualization of most technological applications of HNTs is shown to be far too simplistic. Both cylindrical and prismatic forms have abundant edge steps traversing their surfaces that, by analogy with plates of kaolinite, correspond to prism faces. The mean value for the diameter of the central lumen of the tubes is 12 nm. Numerous slit-like nanopores, with diameters up to 18 nm, also occur between packets of layers, particularly in prismatic forms at the junction between a central cylindrical core and outer packets of planar layers. These pores expose aluminol and siloxane surfaces, but unlike the lumen, which is assumed only to expose an aluminol surface, they do not extend along the entire length of the nanotube. Edge steps seen most clearly by AFM correspond in height to the packets of layers seen in TEM. TEM cross-sections suggest that tube growth occurs by accretion of a spiralled thickening wedge of layers evolving from cylindrical to polygonal form and reveal that planar sectors may be joined by either abrupt angular junctions or by short sections of curved layers. A more realistic model of the internal and external morphologies of HNTs is proposed to assist with understanding of the behaviour of HNTs in technological applications.

Spatial heterogeneity in composition and organisation of the primary cell wall affects the mechanics of cellular morphogenesis. However, directly correlating cell wall composition, organisation and mechanics has been challenging. To overcome this barrier, we applied atomic force microscopy coupled with infrared (AFM-IR) spectroscopy to generate spatially correlated maps of chemical and mechanical properties for paraformaldehyde-fixed, intact Arabidopsis thaliana epidermal cell walls. AFM-IR spectra were deconvoluted by non-negative matrix factorisation (NMF) into a linear combination of IR spectral factors representing sets of chemical groups comprising different cell wall components. This approach enables quantification of chemical composition from IR spectral signatures and visualisation of chemical heterogeneity at nanometer resolution. Cross-correlation analysis of the spatial distribution of NMFs and mechanical properties suggests that the carbohydrate composition of cell wall junctions correlates with increased local stiffness. Together, our work establishes new methodology to use AFM-IR for the mechanochemical analysis of intact plant primary cell walls.

As the measurement scale shrinks, the reliability of nanoscale measurement is even more crucial for a variety of applications, including semiconductor electronics, optical metamaterials, and sensors. Specifically, it is difficult to measure the nanoscale morphology at the exact location though it is required for novel applications based on hybrid nanostructures combined with 2D materials. Here, we introduce an advanced hybrid positioning system to measure the region of interest with enhanced speed and high precision. A 5-axis positioning stage (XYZ, R, gripper) makes it possible to align the sample within a 10-μm field of view (FOV) in both the scanning electron microscope (SEM) and the atomic force microscope (AFM). The reproducibility of the sample position was investigated by comparing marker patterns and denting points between the SEM and AFM, revealing an accuracy of 6.5 ± 2.1 μm for the x-axis and 4.5 ± 1.7 μm for the y-axis after 12 repetitions. By applying a different measurement process according to the characteristics of 2D materials, various information such as height, length, or roughness about MoTe2 rods and MoS2 film was obtained in the same measurement area. As a consequence, overlaid two images can be obtained for detailed information about 2D materials.

This study aimed to evaluate the influence of pH changes on morphometric parameters of casein micelles and a general overview of their conformational structure through microscopy techniques, Raman spectroscopy and multivariate analysis. It was found that casein micelles morphology and protein secondary structure depend strongly upon pH. The changes of arithmetic average roughness (Ra), size, and shape of casein micelles at different pH are properly characterized by atomic force and cryo-transmission electron microscopy. Morphometric changes of casein micelles were correlated correctly with folding and unfolding of casein molecules as evaluated by Raman spectroscopy when the pH was varied. The novelty of this contribution consists in demonstrating that there is a close structure-functionality relationship between the morphometric parameters of proteins and their secondary structure. Knowledge about casein micelles can help improve their use of its diverse applications.

Thanks to the ability to perform imaging and manipulation at the nanoscale, atomic force microscopy (AFM) has been widely used in biology, materials, chemistry, and other fields. However, as common error sources, vertical drift and illusory slope severely impair AFM imaging quality. To address this issue, this paper proposes a robust algorithm to synchronously correct the image distortion caused by vertical drift and slope, thus achieving accurate morphology characterization. Specifically, to eliminate the damage of abnormal points and feature areas on the correction accuracy, the laser spot voltage error acquired in the AFM scanning process is first utilized to preprocess the morphology height data of the sample, so as to obtain the refined alternative data suitable for line fitting. Subsequently, this paper proposes a novel line fitting algorithm based on sparse sample consensus, which accurately simulates vertical drift and slope in the cross-sectional profile of the topographic image, thereby achieving effective correction of the image distortion. In the experiments and applications, a nanoscale optical grating sample and a biological cell sample are adopted to perform topography imaging and distortion correction, so as to verify the ability of the proposed algorithm to promote AFM imaging quality.

Atomic force microscopy (AFM) can determine mechanical properties, associated with surface topography and structure, of a material at the nanoscale. Force–indentation curves that depict the deformation of a target specimen as a function of an applied force are widely used to determine the elastic modulus of a material based on a contact model. However, a hysteresis may arise due to friction between the AFM tip and a specimen. Consequently, the normal force detected using a photodetector during extension and retraction could be underestimated and overestimated, respectively, and the extension/retraction data could result in a significant difference in the elastic modulus measurement result. In this study, elastic modulus and friction coefficient values were determined based on an in situ theoretical model that compensated for the effect of friction on force–indentation data. It validated the proposed model using three different polymer specimens and colloidal-tipped probes for the force–indentation curve and friction loop measurements. This research could contribute to the accurate measurement of mechanical properties using AFM by enhancing the interpretation of force–indentation curves with friction-induced hysteresis. Furthermore, the proposed approach may be useful for analyzing in situ relationships between mechanical and frictional properties from a fundamental tribological perspective.