Seed germination is regulated in a concerted manner that involves generating growth potential in the embryo to overcome the mechanical resistance of the endosperm. The wake-up call of a dry seed includes the reorganization of subcellular structures and the reactivation of metabolism in a dense, oxygen-poor environment. Pools of unbound metabolites and solutes produced by the degradation of storage reserves, including starch, proteins and oils, in the embryo can contribute to the generation of the embryo growth potential and radicle protrusion. Recent genomics studies have contributed a vast amount of data on protein, metabolite and gene transcript profiles during germination, which can be integrated to explore the seed metabolism from water imbibition to radicle protrusion. To what extent are free pools of metabolites relevant to the reorganization of seed metabolism? How is energy built to support embryo growth and radicle protrusion? Elucidating these fundamental questions in seed biology is the key to the understanding of the germination process. Here we have attempted to summarize the recent scientific knowledge to provide a comprehensive description of the ignition, reassembling and regulation of metabolism during seed germination.

Palm diaspores are reported to have various kinds of dormancy. However, (1) the embryo is underdeveloped; (2) the endocarp is water permeable; and (3) the diaspores take a long time to germinate. Thus, we conclude that the diaspores of the majority of palm species have morphophysiological dormancy (MPD). The ones that do not have MPD are morphologically dormant.

We isolated two cDNAs of phosphoenolpyruvate carboxylase (PEPC) from developing rice seeds, Osppc1 and Osppc3. The deduced amino acid sequences of both cDNAs share several conserved motifs with other non-photosynthetic PEPCases, and these common motifs are known to be functionally important to their regulatory properties. The deduced protein sequence of Osppc1 was clustered into a monocotyledonous plant-specific clade, and Osppc3 was clustered into a gramineous plant-specific clade in the phylogenetic tree of plant PEPCases. The mRNA accumulations of Osppc1 and Osppc3 were found in developing rice seeds throughout the grain-filling stages, although their expression patterns differed: Osppc1 was strongly expressed at 7 d after flowering, and Osppc3 was strongly expressed at 4 d after flowering. The kinetic properties of the Osppc1 recombinant protein were quite similar to those of maize root-type PEPCase, except that the sensitivity for malate at pH 7.3 was weaker. Mining rice microarray data, we observed that Osppc1 was co-expressed with aspartate aminotransferase and alanine aminotransferase, which are involved in seed nitrogen metabolism. Moreover, reannotation of the co-expressed genes revealed that Osppc1, the two aminotransferases and the enolase were mapped on to the consecutive reaction from 2-phosphoglycerate to glutamate and pyruvate in the cytosol. These results imply that Osppc1 functions cooperatively with the two aminotransferases in the synthesis of amino acids that are used for storage protein synthesis in developing rice seeds.

Soybean seeds are prone to flooding injury just after planting if they are exposed to excess moisture. We investigated the flooding tolerance of soybean seeds to clarify the relationship between flooding injury and imbibition, to identify factors that could provide fundamental information for the breeding of flooding-tolerant cultivars. Seven cultivars were used for this study. The seeds were geminated in a paper towel after a flooding treatment and then evaluated for survival. The imbibition of submerged seeds (passive imbibition) was evaluated as the seed fresh weight change during the flooding process. The imbibition of seeds with capillary effect (capillary imbibition) was measured by the bottom water supply method. Furthermore, the conductivity of the seed coat and seed osmolarity were measured. After 3 h of flooding, significant differences in survival were detected among cultivars. In addition, the passive imbibition during 10–30 min of flooding, and the capillary imbibition during 0–10 min of flooding were caused by significant differences in the imbibition rate among cultivars. Although neither imbibition showed a significant correlation with the survival directly, the ratio between the passive and the capillary imbibition rate was significantly correlated with survival. Factors affecting imbibition included the hydraulic conductivity of the seed coat and seed osmolarity, which were significantly correlated with the passive and the capillary imbibition rate, respectively. Thus, the balance between the capillary and passive imbibition behaviour of seeds, affected by the hydraulic conductivity of the seed coat and seed osmolarity, was closely correlated with the occurrence of flooding injury in soybean seeds.

Floodplain meadow ecosystems are characterized by high water level fluctuations and highly variable soil water potentials. Additionally, climate change scenarios indicate an increasing risk for summer drought along the northern Upper Rhine and the Middle Elbe River, Germany. While adult plants often persist even after strong changes in water availability, early life phases, such as seed germination and seedling establishment, might be more vulnerable. Therefore we tested whether reduced soil water potentials will affect the germination of meadow species and whether the response varies between (1) forbs indicative of wet and dry habitats and (2) seeds originating from sites along the rivers Elbe and Rhine. We exposed seeds of 20 floodplain meadow species with different moisture requirements from five plant families to a water potential gradient ranging from 0 to − 1.5 MPa. While across species germination percentage and synchrony decreased, germination time increased at reduced water potentials. Germination of the species indicative of dry habitats decreased more strongly, was slower and less synchronous at reduced water potentials than that of species indicative of wet habitats. Seeds from sites along the rivers Elbe and Rhine did not differ in their germination characteristics. We propose that species of wet sites follow an all-or-nothing-strategy with fast and synchronous germination to maximize competitive advantages, betting on a high probability of moist conditions for establishment (optimists). In contrast, species from dry sites appear to follow a bet-hedging strategy with a moisture-sensing mechanism for unsuitable conditions (pessimists), resulting in a slower and less synchronous germination.

Smoke-water (SW), karrikinolide (KAR1) and vermicompost leachate (VCL) have been reported to possess gibberellic acid-like activity. The effects of these plant growth-promoting substances (PGPSs) on biochemical changes occurring during seed germination of Phaseolus vulgaris were assessed. Seeds were incubated/germinated under dark conditions in water (control) or with different concentrations of SW, KAR1, VCL and gibberellic acid (GA3) for 7 d. The maximum seedling fresh weight (1.863 g) was recorded for the SW (1:750 v/v) treatment. The longest seedling axes (9.9 cm) and the highest number of adventitious roots (16.3) were recorded for VCL-treated seedlings (1:10 and 1:5 v/v, respectively). Analysis of two important hydrolytic enzymes, acid phosphatase and alpha-amylase, showed maximum activity [1856 nkat mg− 1 and 3.225 mg min− 1(g FW)− 1, respectively] in the seeds incubated with 10− 8M KAR1. In all the treated seedlings, proline content was significantly reduced [43.67 μg (g FW)− 1; VCL (1:20 v/v)] in comparison to the control [87 μg (g FW)− 1] but there was an increase in amino acids with some concentrations of PGPSs. The tested PGPSs significantly influenced various biochemical parameters that play a significant role in seed germination and plant growth. This study indicates that PGPSs may act via stress-relieving biochemical pathways during seed germination.

Seed size is one of the most important traits in the regenerative phase of a plant's life cycle; however, for cactus species the relationship of seed size and germination characteristics and seedling traits is still unclear. We studied the relationship between seed mass and germination and seedling characteristics in 17 cactus species from central Argentina, belonging to different genera and life forms. We measured seed mass, total seed germination, light requirements for germination and mean time to germination for these 17 cacti species; in addition, we recorded seedling size and shape in 15 species. To test light requirements we performed germination experiments under laboratory conditions at 25/15°C (day/night temperatures) and under light or dark conditions. We also calculated seedling volume by measuring seedling height and width. A shape index was obtained by dividing height by width (a value of 1 indicates ‘globose’ seedlings, whereas, as this value increases, seedlings become ‘columnar’). We found no significant relationship between seed mass and any of the germination characteristics considered. However, species with heavier seeds produced bigger seedlings, which were more cylindrical. Adult growth was not totally determined by seedling ‘growth form’, because some species that had globose seedlings were columnar at the adult stage.