Feeding, defecation, palp behaviour and motility of the tubicolous annelid, Magelona alleni were observed in a laboratory environment. Both surface deposit, and to a lesser extent, suspension feeding were exhibited, with the ingestion of sand grains, and of smaller amounts of foraminiferans and administered commercially available suspension. Predominantly sand could be seen moving through the gut, resulting in conspicuous defecation, not previously observed in other magelonid species. During this ‘sand expulsion’ behaviour, individuals turned around in a network of branched burrows. The posterior was extended from the burrow and substantial amounts of sand were expelled in a string-like formation, involving mucus. The posterior morphology of M. alleni differs greatly compared with other European magelonid species, in possessing a large terminal anus, likely related to its diet. In contrast to what has been recorded for other magelonids, M. alleni appears predominately non-selective. The current paper adds credence to the idea that multiple feeding modes exist within the family. Tube-lined burrows were observed to be primarily permanent, and motility of the species reduced in comparison to other magelonids. The differences noted between M. alleni and other species is most likely linked to its tubicolous lifestyle. The effect of environmental parameters on observed behaviours is discussed.

The continued development of the aquaculture industry is contributing to the proliferation of artificial structures in the marine environment. Observations of seaweed farms (infrastructure and biomass) suggest they act as a habitat for associated species. Seaweed farms differ from other forms of artificial infrastructure as the material deployed already has marine organisms (i.e. culture species) growing on it. This ‘priming’ of ropes with juvenile sporophytes may affect future development of communities by facilitating colonizing species or suppressing competitors. We call this process ‘ecological priming’: the provision of a biological platform that influences the successional development of specific communities. The communities that developed on ropes primed with Alaria esculenta individuals were compared with unprimed ropes to assess the ecological priming effect, at a commercial kelp farm in south-west Ireland. Species richness increased over two cultivation seasons and species composition was consistent between years, with distinct communities developing on primed and unprimed treatments. Timing of species occurrence on primed ropes was predictable with no predictable pattern occurring on unprimed ropes. Multivariate tests indicated distinct communities between treatments, with suppression of other algal species and potential facilitation of some species that have a particular association with A. esculenta on primed ropes. Communities from primed holdfasts contained a lower diversity of algal species compared with unprimed communities. Cultivated kelp holdfasts represent a habitat for distinct assemblages that reflect ecological priming of the substratum.

Surface physical properties, hydrodynamics, biochemical cues, orientation and temporal scales play an important role in invertebrate larval recruitment on artificial substrates. In the present study, invertebrate recruitment on four different substrates (acrylic, stainless steel, ceramic and concrete panels) was investigated in two different orientations (vertical and horizontal) in the central Red Sea. Results showed significant variations in the abundance of benthic invertebrates between the different substrates. While barnacles and bivalves preferred panels placed in vertical positions, the abundance of bryozoans was high on horizontal panels. Artificial panel submersion season plays a significant role in the recruitment of benthic invertebrates on surfaces in the Red Sea. In conclusion, this study supports the overall notion that marine invertebrate recruitment on hard substrates is regulated by a combination of factors which include substrate type, orientation and submersion season.

Tube-building polychaetes are an important group of marine bioengineers in soft-bottom habitats, where they provide structures that potentially influence the composition of the benthic community. The present study investigated the effects of Diopatra cuprea tubes on the structure of the macrobenthic fauna found on a sandy beach of the Amazon coast. Samples were collected in June (rainy season) and September (dry season) 2012 in two different areas: (1) an area in which D. cuprea tubes were present, and (2) a control area, in which worm tubes were absent. A total of 53 taxa were found, of which 30 were associated exclusively with D. cuprea tubes. While large aggregations of D. cuprea were not found in the study area, the presence of even a single tube may have a significant influence on the environmental conditions available for other organisms, especially those adapted to consolidated or muddy substrates. The two areas presented different seasonal patterns. A significant increase in the abundance and richness of the macrofauna was observed in area 1 in the rainy season, when the density of worm tubes increased and the hydrodynamic conditions were less intense. The results of the study highlight the importance of this organism as an ecosystem engineer on the sandy beaches of the Amazon coast.

The island of Bonaire is a long-established Marine Protected Area (MPA), the reefs of which were extensively mapped in the early 1980s. Satellite remote sensing techniques were used to construct reef maps for 2008–2009. Metrics describing the spatial structure of coral habitat at the landscape scale – including coral cover, fragmentation, patch size and connectivity between patches – were calculated and compared between these two time periods. Changes were evaluated in and out of the MPAs and in areas exposed and sheltered from storm damage. Overall, coral cover has declined during the past three decades, being replaced by sand, but the decline has not been as drastic as elsewhere in the Caribbean. Fragmentation of the reef habitat has occurred, resulting in smaller and more disparate patches, but these changes were not associated with exposure along the coastline. However, total coral cover was maintained in sheltered areas, whereas it declined along exposed shorelines. Human protection of reefs by marine reserves had variable effects on coral cover and fragmentation. One of two no-diving marine reserves showed increases in coral cover accompanied by decreases in the number of patches of coral and an increase in the size of individual patches over the time period, while the second reserve exhibited the opposite trend. Advances in satellite remote sensing techniques allow for a more rapid assessment of changes in reefs at the landscape level, which can be used to identify spatial changes in the reef environment, including areas of coral decline.

Mesophotic ecosystems have been relatively poorly studied in the Indo-Pacific and in particular within the Coral Triangle region. Here we used a mini-ROV to explore the changes in major benthic groups at two sites (~200 m apart) in the Wakatobi Marine National Park, SE Sulawesi, Indonesia spanning shallow water coral reefs (5 m) to deeper water mesophotic ecosystems (80 m). We found very similar patterns at both sites where coral cover peaked at 15 m, declined rapidly by 30 m, and was virtually absent at 50 m. As coral declined there was a marked increase in sponges, soft corals and other encrusting organisms (including ascidians, bryozoans, tubeworms, gorgonians and molluscs). Importantly, our results differ from most previous studies in other geographic locations where hard corals extend much deeper. It is unclear what drives this difference but it may be related to higher levels of turbidity and therefore reduced light penetration in the Wakatobi compared with other areas, which limits the vertical extent of coral development.

Subtidal hard bottoms are of particular scientific and economic value as they are highly productive systems. They are less well studied compared with soft bottoms, as they often require manual sample collection via scuba diving. Although a multitude of sampling devices is available for soft bottoms, only a few are suitable for hard substrates, and their performance is largely unstudied. In the present study, three hard bottom sampling methods were compared, regarding their sampling efficiency and the damage they may cause to macrobenthic and meiobenthic organisms. Two of the sampling methods examined are typically employed for the study of hard bottom substrates (manual collection, airlift device), while the third involves a newly constructed sampler (MANOSS – Manual Operated Suction Sampler). All three sampling methods were tested at 12 m depth on a hard bottom substrate with algal coverage dominated by Cystoseira spp. No overall significant differences were observed between the sampling efficiency and the damage caused by the three sampling methods regarding the macrofaunal assemblages, with the exception of the MANOSS method which collected more species than the manual method. In addition, significant differences were observed in the collecting performance for the meiobenthic assemblages, presenting significantly higher densities of meiofauna sampled by the MANOSS compared with the manual collection method, while the airlift device presented an intermediate efficiency. However, taking into account other factors such as cost, ease of use and the scope of each study, none of the methods clearly outperforms the others.

Estuarine chaetognath population dynamics are poorly known worldwide. We have conducted eight seasonal campaigns (October 2007–August 2008) sampling three sectors in the subtropical Babitonga Bay estuary (26°S 48°W) in order to depict chaetognath abundance and population structure dynamics and test the influence of hydrography and food availability and type. Of three species sampled, Parasagitta friderici represented >93% of abundance in all samples and was examined in detail. There were no differences in P. friderici abundance between the sectors of the estuary, related to its high tolerance to low salinity, a feature not common for most chaetognath species. Salinity tolerance is an important adaptive characteristic to thrive within estuarine systems, and probably is responsible for the dominance of P. friderici in coastal and brackish water environments throughout most of its distribution. Juveniles dominated the population most of the year, except in February–April when abundances were lower and adults predominated. These results suggest that recruitment occurs continuously throughout the year, being more intense between October and January (spring to early summer) and in May (autumn) when densities and proportion of juveniles were higher. General Additive Models suggest that temperature and zooplankton biomass are significant (P < 0.05) factors influencing juvenile abundance while only the latter influenced the adults. We conclude that food availability is the most important driver in the studied population of P. friderici and recruitment peaks, which lead to high densities, seem to occur following peaks of their copepod prey along with particular temperature conditions (22–23°C).

Boring sponges are an important component of bioeroder assemblages in tropical coral reefs. They are considered as a potential threat for coral reef health, and the increase of dead corals is expected to promote their abundance. The relationship between the availability of dead coral substrata and the development of boring sponge assemblages was evaluated during El Niño 2015–16 at five reefs from Zihuatanejo, Guerrero, Mexico. Environment and substrate quality were assessed. Overall, environment conditions remained normal in relation to previous studies in the area. Only water temperature showed unusually high records at all sites and coincided with bleaching and mortality of corals, possibly caused by the effects of the El Niño event. Abundance of boring sponges in dead corals and coral rubble was lower than during previous studies. Although sponge abundance was not directly related to cover of both dead corals and coral rubble, cover of dead corals showed a high correlation with the variation in the structure of sponge assemblages across sites. Cliona vermifera dominated sponge assemblages at all sites, and its abundance was high under conditions of high cover of live corals and low cover of bleached corals. Since overall sponge abundance responded in a similar way, these results suggest that boring sponge assemblages dominated by C. vermifera are enhanced by conditions favourable for corals. Our results imply that El Niño events in the Mexican Pacific are not likely to cause immediate population outbreaks of boring sponges.

Mud volcanoes are singular seafloor structures classified as ‘sensitive habitats’. Here we report on the sponge fauna from a field of eight mud volcanoes located in the Spanish margin of the northern Gulf of Cadiz (North-eastern Atlantic), at depths ranging from 380 to 1146 m. Thirty-eight beam-trawl samplings were conducted (covering over 61,000 m2) from 2010 to 2012, in the frame of a EC-LIFE + INDEMARES grant. A total of 1659 specimens were retrieved, belonging to 82 species, from which 79 were in the Class Demospongiae and three in Hexactinellida. Two species were new to science (Jaspis sinuoxea sp. nov.; Myrmekioderma indemaresi sp. nov.) and three others recorded for the first time in the Atlantic Ocean (Geodia anceps, Coelosphaera cryosi and Petrosia raphida). Five additional species were ‘Atlantic oddities’, since this study provides their second record in the Atlantic Ocean (Lanuginella cf. pupa, Geodia cf. spherastrella, Cladocroce spathiformis, Cladocroce fibrosa and Haliclona pedunculata). Basic numerical analyses indicated a significant linear relationship between the species richness per m2 and the number of sponge individuals per m2, meaning that in most volcanoes many species occur in equivalent, moderate abundance. Likewise, sponge species richness increased with depth, while the abundance of hard substrata resulting from carbonate precipitation and the fishing activities around the volcanoes had no detectable effect on the sponge fauna. However, in the latter case, a negative trend – lacking statistical support – underlaid the analyses, suggesting that a more extensive sampling would be necessary to derive more definitive conclusions in this regard.

Cardiac activity of two White Sea Bivalvia species – Mytilus edulis and Modiolus modiolus – was monitored in situ for one full calendar year every 4 days. During the year, we also assessed the temperature and salinity of the ambient seawater (at intervals of 1 min), measured phytoplankton concentration (every 4 days) and checked the reproductive status of the molluscs (every 2 weeks). Our field study showed a significant linear correlation between the molluscs’ heart rates and the temperature of the ambient seawater. However, during specific periods of the year, we observed that phytoplankton composition or reproductive status became the dominant influence over cardiac activity. Phytoplankton concentrations were generally found to be low throughout the entire year, but two peak periods of drastically elevated phytoplankton concentration were found (April and May), and during April the peak heart rates of the blue mussels significantly increased. Spawning time took place in the middle of June, and at this time the cardiac activity of the molluscs did not change in spite of a 4°C temperature increase in the ambient seawater. Monitoring of the heart rates of the real intertidal blue mussels (animals located at the middle part of intertidal) revealed periodic fluctuations in cardiac activity that correlated strongly with tidal fluctuations. Cardiac activity in M. modiolus was significantly lower than in M. edulis from 9 May to 25 November. On the basis of our data, we concluded that the molluscs’ cardiac activity can serve not only as an indicator of the animals’ physiological conditions, but also as an indicator of changes in ambient factors.

Topshells play a pivotal role in intertidal rocky ecosystems and are adapted to harsh thermal and hydric stress. Phorcus sauciatus, a common grazer in the Macaronesian region (Madeira and the Canaries), has rarely been studied due to its restricted geographic distribution compared with Phorcus lineatus. Monthly samples were taken throughout 2017 to analyse biological parameters and evaluate the harvesting effect on the stocks of this species in Madeira. Individuals of the first age classes (<4 years) were dominant (~89%), while immature individuals were more abundant during the summer season. The spawning season occurs between March and August, especially from March to June. The size at first maturity was 12.95 mm long (1.68 years), with a continuous recruitment pattern throughout the year. Yield-per-recruit analysis (Y/R) showed that maximum production is achieved at a fishing mortality of 1.7 year−1, corresponding to a Y/R of 0.023 g. Currently, Phorcus sauciatus seems to be moderately exploited in Madeira, but urgent conservation measures, such as a landing obligation, the establishment of a minimum catch size of 15 mm length, and a closed season (February–May), are warranted to preserve stocks of this species in the medium to long term.

Between 2013 and 2015, 2092 chondrichthyan fish belonging to eight species were collected along the Tunisian coast and examined for parasitic copepods. Eleven different species of copepods representing five families, Caligidae, Eudactylinidae, Kroyeriidae, Lernaeopodidae and Pandaridae, were collected. Three of these species are reported for the first time in Tunisia (Pseudocharopinus malleus, Perissopus dentatus and Nesippus orientalis) and one new species of Kroyeria was found. In addition, we identified a number of new host records including: the presence of Eudactylinella alba on Bathytoshia centroura, Dasyatis pastinaca, Mustelus mustelus and Scyliorhinus canicula. This is the first record of Nemesis sp. on B. centroura in Tunisia. We report here for the first time the presence of Pseudocharopinus bicaudatus and Pseudocharopinus concavus on Bathytoshia centroura and Lernaeopoda galei on Raja clavata.

Structural and functional properties of exoskeleton in moulting sea slaters Ligia pallasii from the Eastern Pacific coast were investigated with CT scanning and electron microscopy. Ultrastructure of preecdysial and postecdysial cuticular layers was described in premoult, intramoult and postmoult animals. Cuticle is a flexible extracellular matrix connected to the epidermal cells through pore channels. During premoult epicuticle and exocuticle are formed and during intramoult and postmoult endocuticular lamellae are deposited and the cuticle is progressively constructed by thickening and mineralization. Cuticle permeability, flexibility and waterproofing capacity change accordingly. Elaboration of epicuticular scales connected to an extensive network of nanotubules, establish its anti-adhesive and hydrophobic properties. Labelling with gold conjugated WGA lectins on Tokuyashu thawed cryosections exposes differences in chitin content between exocuticle and endocuticle. Histochemical staining of cuticle shows presence of acidic carbohydrates/glycoconjugates and lipoproteins in epicuticular layer. Chitin microfibrils are formed at the microvillar border of epidermal cells with abundant Golgi apparatus and secretory vesicles. Numerous spherules associated with nanotubules were observed in the ecdysial space in intramoult animals. The mineral component of the cuticle as visualized with CT scanning indicates progressive mineral resorption from the posterior to the anterior half of the body in premoult animals, its translocation from the anterior to posterior part during intramoult and its progressive deposition in the posterior and anterior exoskeleton during postmoult. Cuticle of sea slaters is a unique biocomposite and biodynamic material constantly reconstructed during frequent moults, and adapted to specific physical and biotic conditions of the high intertidal rocky zone.

The present study investigated the population dynamics of Hepatus pudibundus in the Cananéia region, in southern São Paulo state, Brazil, focusing on population structure, growth parameters, longevity, sex ratio, reproduction and recruitment juvenile period. Sampling was performed monthly at seven stations from July 2012 to June 2014, using a shrimp fishing boat. A total of 1650 specimens were collected: 551 males and 1099 females. The males were larger than females. Reproductive females were captured throughout the study period and juveniles were captured in most months. Both of these demographic categories were positively correlated with temperature. Growth parameters showed differences between sexes: CW∞ = 78.91 mm, k = 0.0066 day−1, t0 = 0.0965 for males and CW∞ = 69.71 mm, k = 0.0053 day−1, t0 = −0.2404 for females. Longevity was estimated at 1.91 and 2.40 years for males and females, respectively. The findings provide a greater understanding of the life cycle in this species. Additionally, since trawl nets are not selective, this study also provides information for better trawl fishery management, addressing not only the target shrimp but also the by-catch species.

Understanding demographic processes over multiple spatial scales is vital for the optimization of conservation/management strategies, particularly for commercially harvested taxa such as the brown crab (Cancer pagurus L). Brown crab population genetic structure was investigated at (i) a local scale within the Irish Sea, which included comparisons with the Lundy No Take Zone (NTZ) and (ii) across the NE Atlantic. The results indicate that the brown crab does not exhibit strong spatial structure either within the Irish Sea or at the regional level, suggesting high gene flow within and among the Irish Sea, English Channel and North Sea. Comparisons between the Lundy NTZ and harvested areas revealed similarly high levels of genetic diversity. An intriguing result was that the Lundy NTZ sample exhibited a degree of genetic patchiness (ephemeral geographically unpatterned differentiation) which may indicate elevated recruitment skews within the NTZ. Overall, the results support the view that brown crabs within the sampled area belong to a single genetically panmictic stock and that if breeding stock sizes are maintained genetic drift will not be strong enough to reduce neutral genetic diversity. The highly connected nature of this species requires international cooperation for sustainable management, an important component of which will be the application of more powerful population genomic approaches to assess finer scale aspects of stock structure as well drivers of genetic patchiness reported for the species. This is a timely consideration in light of potential future misalignments between biological and geopolitical stock boundaries in the Irish Sea following Brexit.

We used a new, easy to use, highly selective, low impact and cheap method of sampling in the swash zone of a sandy beach to obtain catch per unit effort data (CPUE) for Pennant's swimming crab, Portumnus latipes (Pennant, 1777). Metal stakes baited with sardines were used to attract the crabs that were caught by hand. Crab density was estimated based on area of attraction and maximum CPUE and compared with estimates from bivalve dredges used at depths from 3 to 6.5 m. The baited stake method gave an estimate of 0.026 crabs m−2, which is comparable to bivalve dredge estimates (0.0059–0.045 crabs m−2). This approach can be used for crustaceans, gastropods and other mobile benthic organisms.

Information on the genetic population structure of economic species is important for understanding their evolutionary processes and for management programmes. In this study, the genetic structure of 12 P. trituberculatus populations along the China seas and Japan was analysed. A fragment of mitochondrial control region was sequenced as a genetic marker in swimming crabs sampled from the Bohai Sea, Yellow Sea, East China Sea, South China Sea and Japan, with dense sampling in the Bohai Sea. These populations showed an intermediate and significant genetic population structure, with an overall Φst value of 0.054 (P < 0.01). Based on a hierarchical AMOVA, they could be divided into two groups, the South China Sea population and all the other populations. The distribution of the haplotypes and the pairwise Φst values between populations indicated a high level of gene flow among most populations in the Bohai Sea, Yellow Sea, East China Sea and Japan. However, low but significant genetic differentiation (P < 0.05) was also detected among several populations in these areas. Many details of the genetic structure were revealed, especially for the populations in the semi-enclosed Bohai Sea, and the inconsistency with previous studies was discussed. The structure patterns indicate that sea-level changes during the glacial period of the Pleistocene and oceanographic factors are important in shaping the genetic population structure of swimming crabs. Finally, the implications for fishery are suggested.

Sexual differences in behaviours are often affected by the difference in individual interests between the sexes: growth in males and egg production in females. Some hermit crabs show sexual differences in shell use patterns during the reproductive season. In the non-reproductive season, however, when both sexes are focused on increasing growth, this sexual difference is expected to be reduced. In this study, we compared the pattern of shell use in the hermit crab Pagurus minutus between seasons, while focusing on the effects of shell shape on growth or egg production. As we predicted, sexual differences in shell use in P. minutus showed seasonal change. In the non-reproductive season, both sexes appeared to use shells well suited for growth. In the reproductive season, sexual differences became more evident, especially in larger solitary crabs and guarding pairs; males monopolized round-type shells such as those of Umbonium moniliferum, whereas more than 80% of females relied on high-spired Batillaria-type shells such as those of Batillaria zonalis. A lack of advantage for egg number in females using Batillaria-type shells suggests that female shell use is explained by factors other than maximizing clutch size. Both sexes can moult during the reproductive season, and larger body size is advantageous for reproduction. Given that Batillaria-type shells resulted in a lower growth increment and males have an advantage in shell fights in congeneric crabs, our findings suggest the importance of intersexual competition for shells and female compromise in determining the seasonal change of shell use patterns in P. minutus.

Three new species of snapping shrimps of the genus Alpheus are described from the Persian Gulf. These belong to the Alpheus edwardsii species-group, which is mainly characterized by unarmed orbital hoods and the presence of dorsal and ventral notches on the palm of the major chela. Alphus ankeri sp. nov. shows a close affinity to A. pacificus Dana, 1852 and A. heronicus Banner & Banner, 1982 bearing no balaeniceps crests in both sexes on the dactylus of the minor chela, and the merus of the major chela of both sexes are unarmed. This species differs from the closely related species by the absence of an overhanging proximal shoulder in the major chela. The other rock crevice inhabiting species, A. mohammadpouri sp. nov. is diagnosed by exhibiting sexual dimorphism in its balaeniceps crests and the armed merus of the major chela. These two characters are similar to those recorded for three sandy/rubble dwelling species: A. inopinatus Holthuis & Gottlieb, 1958, A. lobidens De Haan, 1849 and A. australiensis Banner & Banner, 1982. This new species is distinguishable from these latter species by the shape of the minor chela and colour pattern. A coral inhabiting species A. abumusa sp. nov. appears to be closely related to A. maindroni Coutière, 1898, showing an armed merus of the major chela and the absence of spine-like seta on the ischia of the third legs. This last new species is easily discriminated from A. maindroni by longer antennular segments, a markedly concave frontal margin between the rostrum and orbital hood, and a different colour pattern.