Hostname: page-component-cd9895bd7-jn8rn Total loading time: 0 Render date: 2024-12-22T14:59:53.989Z Has data issue: false hasContentIssue false

Biochemical techniques for the genetic and phenotypic analysis of viruses: ‘Molecular Epidemiology’

Published online by Cambridge University Press:  19 October 2009

J. S. Oxford
Affiliation:
National Institute for Biological Standards and Control, Holly Hill, Hampstead. London NW3 6RB
Rights & Permissions [Opens in a new window]

Extract

Core share and HTML view are not available for this content. However, as you have access to this content, a full PDF is available via the ‘Save PDF’ action button.

New technologies now enable virologists to study small genetic and antigenic differences between field isolates of animal viruses at a higher level of discrimination than has been possible using conventional serological techniques. The most important of the laboratory techniques revolve around the use of monoclonal antibodies, peptide mapping, fingerprinting of whole RNA virus genomes, RNA:RNA hybridization, ‘electropherotyping’ of virus RNA or polypeptides, restriction enzyme analysis of virus DNA genomes, cloning of genes and rapid sequencing of viral DNAs and RNAs, in the latter case using primer extension techniques (reviewed by Palese & Roizman, 1980). From a practical point of view, genetic and phenotypic heterogeneity among viruses may be of considerable importance in attempts to control certain virus diseases by chemo- or immunoprophylaxis.

Type
Special Article
Copyright
Copyright © Cambridge University Press 1985

References

REFERENCES

Aaronson, R. P.Young, J. F. & Palkse, P. (1982). Oligonucleotide mapping: evaluation of its sensitivity by computer-simulation. Nucleic Acids Research 10, 237240.CrossRefGoogle ScholarPubMed
Birrer, M. J., Udem, S., Nathenson, S. & Bloom, B. R. (1981). Antigenic variants of measles virus. Nature 293, 6769.CrossRefGoogle ScholarPubMed
Buchman, T. G., Simpson, T., Nosal, C. & Roizman, B. (1980). The structure of herpes simplex virus DNA and its application to molecular epidemiology. Annals of the New York Academy of Science 354, 279290.CrossRefGoogle ScholarPubMed
Chaney, S. M. J., Warren, K. G., Kettyls, J., Zbitnue, A. & Subak-Sharpe, J. H. (1983). A comparative analysis of restriction enzyme digests of the DNA of herpes simplex virus isolated from genital and facial lesions. Journal of General Virology 64, 357371.CrossRefGoogle ScholarPubMed
Dimitrov, D. H., Graham, D. Y., Lopez, J., Muchinik, G., Velasco, G., Stenback, W. A. & Estes, M. K. (1984). RNA electropherotypes of human rotaviruses from North and South America Bulletin of the World Health Organization 62, 321329.Google ScholarPubMed
Espejo, R. T., Munoz, O., Serafin, F. & Romero, P. (1980). Shift in the prevalent human rotavirus detected by ribonucleie acid segment differences. Infection and Immunity 27, 351354.CrossRefGoogle ScholarPubMed
Flores, J., Perez, I., White, L., Perez, M., Kalica, A. R., Marquina, R., Wyatt, R. G., Kapikian, A. Z. & Chanock, R. M. (1982). Genetic relatedness among human rotaviruses as determined by RNA hybridization. Infection and Immunity 37, 648655.CrossRefGoogle ScholarPubMed
Follett, E. A. C. & Desselberger, U. (1983). Co-circulation of different rotavirus strains during a local outbreak of infantile gastroenteritis. Monitoring by rapid and sensitive nucleic acid analysis. Journal of Medical Virology 11, 4952.CrossRefGoogle Scholar
Follett, E. A. C., Sanders, R. C., Beards, G. M., Hundley, F. & Desselberger, U. (1984). Molecular epidemiology of human rotaviruses. Analysis of outbreaks of acute gastroenteritis in Glasgow and the west of Scotland 1981/82 and 1982/83. Journal of Hygiene 92, 209222.CrossRefGoogle ScholarPubMed
Ghendon, Y., Klimov, A., Gorodkova, N. & Dohner, L. (1981). Genome analysis of influenza A virus strains isolated during an epidemic of 1979–1980. Journal of General Virology 56, 303313.CrossRefGoogle ScholarPubMed
Holland, J., Spindler, K., Horodysiki, F., Grabau, E., Nichol, S. & Van De Pol, S. (1982). Rapid evolution of RNA genomes. Science 215, 15771585.CrossRefGoogle ScholarPubMed
Lonsdale, D. M., Brown, S. M., Lang, J., Subak-Sharpe, J. H., Koprowski, H., Warren, K. G. (1980). Variations in herpes simplex virus isolated from human ganglia and a study of clonal variation in HSV-1. Annals of the New York Academy of Science 354, 291308.CrossRefGoogle Scholar
Merril, C. R., Switzer, R. C. & Van Keuren, M. L. (1979). Trace polypeptides in cellular extracts and human body fluids detected by two-dimensional electrophoresis and a highly sensitive silver stain. Proceedings of the National Academy of Sciences of the United States of America 76, 43354339.CrossRefGoogle Scholar
Minor, P. D. (1980). Characterisation of strains of type 3 poliovirus by oligonucleotide mapping. Journal of General Virology 59, 307317.CrossRefGoogle Scholar
Minor, P. D., Schild, G. C., Ferguson, M., Mackay, A., Magrath, D. I., John, A., Yates, P. J. & Spitz, M. (1982). Genetic and antigenic variation in type 3 poliovirus: characterization of strains by monoclonal antibodies and TI oligonucleotide mapping. Journal of General Virology 61, 167176.CrossRefGoogle Scholar
Nakajima, K., Desselberger, U. & Palese, P. (1978). Recent human influenza A (H1N1) viruses are closely related genetically to strains isolated in 1950. Nature 274, 334339.CrossRefGoogle ScholarPubMed
Nakajima, S., Nakajima, K., Takeuchi, Y. & Sugiura, A. (1980). Influenza surveillance based on oligonucleotide mapping of RNA of H1N1 viruses prevalent in Japan 1978–1979. Journal of Infectious Diseases 142, 492502.CrossRefGoogle ScholarPubMed
Nottay, B. K., Kew, O. M., Hatch, M. H., Heyward, J. T. & Obijeski, J. F. (1981). Molecular variation of type I vaccine related and wild polioviruses during replication in humans. Virology 108, 405423.CrossRefGoogle ScholarPubMed
Oxford, J. S., Abbo, H., Corcoran, T., Webster, R. G., Smith, A. J., Grilli, E. A. & Schild, G. C. (1983). Antigenic and biochemical analysis of field isolates of influenza B virus: evidence for intra- and inter-epidemic variation. Journal of General Virology., 64, 23672377.CrossRefGoogle ScholarPubMed
Oxford, J. S., Klimov, A. I., Corcoran, T., Ghendon, Y. Z. & Schild, G. C. (1984). Biochemical and serological studies of influenza B viruses: comparisons of historical and recent isolates. Virus Research, 1, 241258.CrossRefGoogle ScholarPubMed
Palese, P. & Roizman, B. (eds). (1980). Genetic Variation of Viruses. Annals of the New York Academy of Science 354, 1507.Google Scholar
Rodger, S. M., Bishop, R. F., Birch, L., McLean, B. & Holmes, I. H. (1981). Molecular epidemiology of human rotaviruses in Melbourne, Australia, from 1973 to 1979 as determined by electrophoresis of genome ribonucleic acid. Journal of Clinical Microbiology 13, 272278.CrossRefGoogle ScholarPubMed
Schild, G. C., Oxford, J. S., De Jong, J. C. & Webster, R. G. (1983). Evidence for host-cell selection of influenza virus antigenic variants. Nature (Lond). 303, 706709.CrossRefGoogle ScholarPubMed
Schnagl, R. D., Rodger, S. M. & Holmes, I. H. (1981). Variation in human rotavirus electropherotypes occurring between rotavirus gastroenteritis epidemics in Central Australia. Infection and Immunity 33, 1721.CrossRefGoogle ScholarPubMed
Squire, K. R. E., Osburn, B. I.Chuang, R. Y. & Doi, R. H. (1983). A survey of electropherotype relationships of Bluetongue virus isolates from the Western United States. Journal of General Virology 64, 21032115.CrossRefGoogle ScholarPubMed
Straus, S. E., Hay, J., Smith, H. & Owens, J. (1983). Genome differences among varicella-zoster virus isolates. Journal of General Virology 64, 10311041.CrossRefGoogle ScholarPubMed
Wiktor, T. J. & Koprowski, H. (1980). Antigenic variants of rabies virus. Journal of Experimental Medicine 152, 99112.CrossRefGoogle ScholarPubMed
Yewdell, J. W., Webster, R. G. & Gerhard, W. U. (1979). Antigenic variation in three distinct determinants of an influenza A haemagglutinin molecule. Nature 279, 246248.CrossRefGoogle ScholarPubMed