A geological, mineralogical, and geochemical characterization of the Tamame de Sayago (Zamora, Spain) deposit was carried out with the aim of knowing the conditions that facilitated the genesis in the same deposit of kaolinite and smectites. The alteration processes affecting a Variscan granite were deduced throughout the study of a very wide group of representative samples by X-ray diffraction (XRD), scanning electron microscopy (SEM), chemical analyses of major, minor, and trace elements, as well as δ18O, δ34S stable isotope and K/Ar dating analyses. In addition, 2D and 2.5D graphs of the kaolinite and smectite isoconcentrations were obtained from core data. According to the color and texture, two different clayey rock types were identified and named as homogeneous alteration zones (ZAHO) and heterogeneous alteration zones (ZAHE). The ZAHO are regoliths in which the granite texture is preserved, and the feldspars are almost completely kaolinized. In the ZAHE, the original texture of the granitic rock is lost, and the main clay mineral is smectite. The mineralogical composition is similar, with kaolinite, smectite, mica, quartz, scarce feldspar, and occasionally natroalunite and APS (aluminum-phosphate-sulphate); however, the mineral concentration varies considerably because ZAHO are rich in kaolin areas whereas ZAHE are bentonitic areas. Both rock types contain numerous veins and nodules. The weathering of the Paleozoic granite alongside the absence of sedimentation during the Mesozoic led to the formation of kaolinite that is preserved in ZAHO materials. Nonetheless, during the Cretaceous–Tertiary transit, the conditions of tectonic stability varied. Late Variscan faults reactivated which allowed the percolation of Mg- and Ca-rich hydrothermal fluids through the already kaolinized granite, increasing the alteration of the primary silicates and leading to the formation of smectites in ZAHE materials. The amount of smectites is greater closer to the faults. The stable isotopes indicate the meteoric nature of the low-temperature hydrothermal fluids. The K/Ar data obtained from the natroalunite of veins indicate that those hydrothermal fluids circulated in different pulses from 66.4 ± 1.7 to 58.8 ± 1.5 Ma, as a minimum. Those ages are coincident with the first formation stages of the Duero Basin.