Dietary guidelines often combine plant and animal protein intake recommendations, yet some evidence suggests they may have distinct associations with diet quality and obesity. This study aimed to examine relationships between animal and plant protein intake, based on different protein classification approaches, and diet quality and obesity. Plant and animal protein contents of foods reported by 7637 adult participants aged ≥19 years during the 2011-12 Australian National Nutrition and Physical Activity Survey were estimated using Australian food composition databases. Usual animal, plant, and total protein intakes were estimated using Multiple Source Method. Diet quality was assessed using the 2013-Dietary Guidelines Index (DGI), and obesity measures included BMI and waist circumference (WC). Sex-stratified multiple linear and logistic regressions were performed and adjusted for potential confounders. Plant and animal protein intakes were positively associated with DGI scores [Plant protein: men, β=0.74(95%CI: 0.64, 0.85); women, β=0.78(0.67, 0.89); Animal protein: men, β=0.15(0.12, 0.18); women, β=0.26(0.22, 0.29)]. These associations were consistent when examining high-quality plant protein (i.e., high-protein-containing plant-based foods with comparable nutritional values to animal proteins) and non-dairy animal protein intakes. Plant protein intake was inversely associated with BMI and WC in men but not women. Animal protein intake was positively associated with BMI in men and women and WC in men only [β=0.04(0.02, 0.07)]. Plant protein intake was inversely associated with obesity [OR=0.97(0.96, 0.99)] and central obesity [OR=0.97(0.95, 0.98)] among men only. Further studies are needed to examine the influence of different animal protein sources by accounting for energy intake and sex-specific associations.