Despite the importance of the dredge fishery in Portugal, few studies have focused on bycatch and discard mortality. Catches from three types of dredge: north dredge (ND); grid dredge (GD); and traditional dredge (TD), currently used in the Spisula solida (Bivalvia: Mactridae) fishery, were compared in order to characterize bycatch and to estimate discard mortality. In TD and ND, the catch was retained in a net bag, whereas in the GD a metallic grid cage was used. Tows were carried out on sandy bottoms at depths ranging from 5 to 10 m. Bycatch differed significantly between dredges. The ratio of bycatch abundance to S. solida was 0.22:1 for ND, 0.10:1 for GD and 0.33:1 for TD. The weight ratio was 0.15:1, 0.14:1 and 0.32:1 for ND, GD and TD, respectively. Although a lower bycatch was observed for GD, higher mortality (ND: 10%; TD: 20%; GD: 36%) was estimated for this dredge. However, taking into consideration the fishing yields obtained for each dredge combined with the fact that this fishery is managed by daily quota per vessel, our results showed that, at daily quota level, discard mortality was lower when GD was used. Our study suggests that in output-controlled fisheries, there are obvious advantages in developing dredges with rigid retention structures, such as metallic grids, because these are more selective and efficient than dredges that use net bags. At species level, the bycatch mortality to attain quota varied among dredges. A “selective” and persisting significant removal of bycatch species from biota may change benthic community structure. Therefore, clam fisheries should apply exploitation strategies that are goal-oriented and adaptive to the evolution of the macrofauna communities, which might include the use of different dredge types, thereby diversifying the bycatch and consequently avoiding the cumulative removal of specific macrofauna taxa.

A population of the invasive slipper limpet (Crepidula fornicata) has been spreading in the Bay of Mont-Saint-Michel (Western English Channel) for 40 years. Sidescan sonar, underwater video and quantitative sampling were conducted in 1996 and 2004 to document the widening geographic spread of the species over the bay. The limpet population grew by 50% during this period, to reach a fresh biomass of about 150 000 t. This local study analyses causes and effects of the spread and provides a typical example of the limpet spreading process. This population increase has significant effects on the environment in the most densely colonized area (modification to the sediment and biodiversity), leading to the emergence of a new benthic community. Anthropic dredging activities are among the causative factors of the spread but are also adversely affected by the invasion.

Strategies for biomass control are actively sought in response to proliferation of the introduced, suspension-feeding gastropod Crepidula fornicata along European coasts. Among these, dredging, crushing and on-site rejection may only be envisaged if the risk of further dissemination through the release of gametes and of excapsulated embryos/larvae is found to be nil or extremely low. This study evaluates such risk using three approaches: (1) determination of the periods of brood presence/absence, (2) external fertilizations of gametes obtained by gonad stripping, (3) cultures of mechanically-excapsulated embryos and larvae. A period of near- or total brood absence was observed between September 2006 and January 2007. The few zygotes (1.5% to 7.5%) obtained from external fertilizations did not proceed beyond the 4-cell stage. Excapsulated young embryos and mid-stages died in less than 4 days of culture. Despite their ability to swim, grow and feed, excapsulated veligers all died before metamorphosis. No juveniles were obtained from external fertilizations and excapsulated cultures, indicating that the release of crushed catches directly at sea could not present a dissemination risk from the standpoint of gamete or prematurely-excapsulated larval dispersal. Furthermore, by carrying out the crushing operations during the period of brood absence, the dissemination risk becomes nil. Negative ecological impact of such operations could be offset by attraction of motile predators, as yet unaccustomed to this introduced species, and their subsequent generalization to live slipper limpets and invasive feral Crassostrea gigas. At the very least, this biomass reduction approach would concentrate bottom habitat unavailability to restricted zones, freeing up the rest of the subtidal for other, formerly displaced species, as well as reducing the pressure on the trophic carrying capacity of affected habitats.

A reliable anaesthesia and sampling protocol for Pacific oysters will enable experiments to be conducted without sacrificing animals and will facilitate successive sampling of individuals for gametogenesis studies. As no such techniques were available for Crassostrea gigas, the present study aimed to define suitable anaesthetic conditions for use with this species. Three groups of ten oysters (mean weight ± SD, 32.1 ± 9.0 g) were anaesthetised in 5 L containers. Among different chemicals: benzocaine, eugenol and three different types of magnesium chloride (a laboratory one – Flucka® – and two designed for agriculture – DEUSA International® and Dead Sea Works®) and concentrations tested, one laboratory (concentration: 72 g L−1) and one agricultural (Dead Sea Works® 50 g L−1) type of magnesium chloride were the most effective, respectively inducing anaesthesia in 73 ± 3% and 80 ± 3$% after three hours. Lower oyster weight and a two day period of starving prior to treatment significantly increased the number of anaesthetised animals. Using this protocol, losses of 0 to 10% of oysters were observed one week after anaesthesia. Increasing anaesthesia duration from 3 to 16 h resulted in a significant increase in the number of anaesthetised oysters (from 50 ± 10 to 97 ± 7%) but no increase in mortality (7 ± 11%). On the other hand, reducing water temperature from 19.5 °C to 15.3 °C, resulted in a significant decrease in anaesthesia efficacy. A reliable anaesthesia protocol was developed: 100% of Pacific oysters are anaesthetised using 50 g L−1MgCl2 Dead Sea Work®for a 16 h duration. This long duration facilitates tissue sampling and does not increase the working time needed. This protocol was validated by monthly anaesthesia and gonad sampling during a three month period with the loss of only a single oyster. It can thus be used for routine applications.

A study of the reproductive biology of the loliginid squid, Alloteuthis subulata in the North Sea, Irish Sea and Portuguese waters was carried out. A predominance of small squid (<50 mm ML) during autumn was observed in all three areas. Multi-modal size-frequency distributions were apparent in both sexes. The greatest complexity was observed in Portuguese waters, with males exhibiting possibly four or more modal size classes. Sexually mature squid were found throughout the year, with generally more mature squid in spring-summer and fewer in autumn-winter. In Portuguese waters, maturity in both sexes peaked in spring, whereas maturity in the other areas peaked in summer. Similar sizes-at-maturity were observed, with male squid maturing over a greater size range (40–125 mm ML) than females (30–50 mm ML). An apparent secondary peak in male maturity at 65 mm ML suggests two different size-maturation patterns in Portuguese waters. Estimates of potential fecundity in the Irish Sea ranged from $\sim $2200–13 500 eggs per female. Mean egg diameters of 0.45 mm and 1.55 mm were recorded for developing oocytes and mature ova, respectively. Three to four modal size classes of oocytes were apparent in each ovary. There was some indication of latitudinal effects on growth, maturation and reproduction of A. subulata across its geographic range. The greater complexity of size-structure in warmer waters suggests that water temperature may be the main factor involved, possibly through shorter incubation times, faster growth and maturation rates and extended spawning periods.

The reproductive dynamics of swordfish (Xiphias gladius) was investigated from catches of the Reunion Island-based longline swordfish fishery between 19–25 °S and 48–54 °E. Thus, 1727 swordfish (size range 75–289 cm, lower jaw-to-fork length, LJFL) were sampled on board commercial fishing vessels during the period of May 1998 to January 2001. Reproductive activity was assessed using macroscopic gonad characteristics, trends of gonadal indexes for both sexes, oocyte size-frequency distributions and microscopic investigation of oocyte development stages. Size at first maturity (L50) for female and male swordfish was estimated in Indian Ocean for the first time. L50 was estimated at 170 cm and 120 cm (LJFL) for females and males, respectively. Spawning occurred from October to April in the vicinity of Reunion Island where sex ratio of caught populations fluctuated seasonally. The seasonal changes in sex ratio and the incidence of larger individuals at the beginning of the spawning season provide some preliminary indications of synchronized movements of swordfish between spawning grounds and neighboring regions. Our results add significantly to knowledge about the reproductive biology of swordfish in the southwestern Indian Ocean. An overview of the available information on reproductive biology and dynamics of swordfish in Indian Ocean and eastern Pacific indicated that spawning activity is localized in discrete areas, and showed that there is incomplete information on spawning grounds in this extended area.

Batch fecundity and relative fecundity of swordfish (Xiphias gladius) in the southwestern Indian Ocean were estimated from seven gravid swordfish females (size range 127–225 cm lower jaw-to-fork length, LJFL) with unovulated, hydrated oocytes collected onboard Reunion-based (France) longline swordfish fishing vessels between December 1999 to January 2001. To investigate the spawning pattern of swordfish, we used data collected through a combination of two at sea sampling regimes. A total of 17 007 geo-located size data of swordfish were recorded during 8 years (1993-2001) and a total of 1727 (size range 75–289 cm, LJFL) swordfish gonads (1107 females and 620 males) were sampled from May 1998 to January 2001. The estimated batch fecundity ranged from 995 000 hydrated oocytes for the smallest ripe female to 4.3 millions for the largest female sampled measuring respectively 127 to 225 cm in curved length (LJFL). The relative fecundity ranged from 25 to 72 hydrated oocytes per gram of body weight. We found that batch fecundity was positively correlated with fish length and that the older/larger females have earlier and longer spawning seasons than younger/ smaller females. These findings suggested that older/larger females which are seasonally migrating in this spawning ground seem to play a major role in reproductive success of the species in producing significantly more offspring than younger females during an extended spawning season. Examination of the length-frequency date from the fishery indicated that the young fish are resident around Reunion and around the seamounts off Reunion Island. Our results highlight the important role of the older/larger females in the reproductive capacity of southwestern Indian Ocean stock. We discuss the potential implications of fishing the older/larger females for this stock in terms of reproduction and recruitment.

Day and night acoustic surveys were used to compare fish stock estimates at eight European reservoirs and one flooded mining pit. During both photoperiods of summer, higher fish biomass was observed in the uppermost 4 m of the water column by horizontal beaming than in deeper water by vertical beaming. Comparisons of volume backscattering coefficient (sv), fish biomass (kg ha−1), abundance (ind. ha−1) and average fish weight (g) did not show a common pattern among the reservoirs but were found to vary significantly across photoperiods. At most reservoirs, the night surveys had higher estimates than day surveys. However, at several reservoirs the opposite pattern was observed. These patterns could not be explained by the species composition of the fish stocks. Fish size distributions were found to be different between day and night. A higher proportion of 1+ and older fish were found during the night at two of three studied waterbodies. In general, it was not possible to decide whether day or night acoustic surveys gave more reliable fish stock assessments. We advise performing both day and night transects on a given water body before deciding when to conduct the full survey. For a complete fish assessment it is very desirable to combine acoustic mobile surveys with active sampling gear.

To better understand the effects of perturbations (e.g. global change) or habitat restorations on fish population dynamics, it is crucial to improve the knowledge about strategies of habitat use (especially in terms of velocity use) by fish. Many recent studies accurately describe kinematics or energetic budgets of swimming activities, which are often species-specific and hardly transferable to other species. The main goal of the present study was to revive more general ecomorphological relationships between body shape and strategies of velocity use by highlighting a functional aspect of fish morphology: the hydrodynamic potential. For this purpose, potential relationships between minimum drag coefficients (Cdmin, constant at high Reynolds numbers), velocity use, fish morphology and drag in given flow conditions were investigated. To assess these relationships, dead drag values (i.e. drag values measured on dead, straight individuals) of 27 riverine species (108 individuals in total) common in France were experimentally measured under various flow conditions. These values served to estimate the Cdmin of fish. For pelagic species, Cdmin values were related to both preferred and near-maximum flow velocity used by the fish in nature. Explaining 61% of its variability, Cdmin was described using six morphological variables, which demonstrates the functional link between fish morphology and velocity use. For all studied species, a model explained 94% of drag variability using the Reynolds number of fish and three morphological variables. The link between morphology and drag force at given velocity conditions provides simple elements for modelling fish energetics in the context of physical habitat use. Moreover, the relationships between fish velocity use and their Cdmin open many applied perspectives, such as assessing the species abilities to withstand discharge modulations.

In the context of the European Water Framework Directive, the in- and outflow water quality from 13 German trout farms, rearing mainly rainbow trout (Oncorhynchus mykiss) and using inflow rates between 0.03–0.80 m3 s−1, were monitored for point-source pollution. The farms had a significant effect on the effluent quality and macro-invertebrate fauna in adjacent streams (saprobic index based on species assemblage and abundance was 1.56–2.10 upstream of the farms but increased to 2.06–2.37 downstream of the farms). Inflow water quality, type of rearing unit, feeding intensity (amount of feed input in relation to water resources) and effluent treatment method could be used to predict effluent quality by 50 to 88% for most water characteristics. Based on these results, different effluent treatment options were monitored for their treatment performance. Concrete sedimentation basins 11 m × 7 m × 1.2 m and 5.5 m ×  3.3 m × 1.5 m (L × W × H), respectively, used for total farm effluent had little or no treatment effects. The micro-screen examined was relatively effective on particulate water components, measured as total phosphorous (TP), biochemical oxygen demand (BOD5), chemical oxygen demand (COD) and total suspended solids (TSS), resulting in treatment efficiencies of 29–53%, which is less than expected from data in the literature. The constructed wetland examined showed the highest treatment efficiency: more than 35% for TP, COD, BOD5, TSS and total ammonia nitrogen (TAN). From these results and data from the literature, treatment strategies for trout farm effluents can be developed, depending on the rearing system and production intensity.

Genetic parameters for carcass quality traits were estimated in 27 families of sea bass (3 dams × 9 sires factorial mating design), raised mixed in the same tanks starting before hatching. Offspring parentage was determined a posteriori using 6 microsatellite loci. Carcass quality traits were recorded at 818 days post fertilization (mean standard length: 32.6 ± 3.1 cm). Genetic parameters were estimated from the sire half sib variance and covariance components. Heritability of body weight (BW) and carcass processing traits (standardized to body weight) percent head weight (Head%), percent viscera weight (Viscera%) and percent visceral fat weight (VisceFat%) were relatively high ranging from 0.48 ± 0.15 (Viscera%) to (Head%); the estimate of heritability for fillet yield (Fillet%) was lower (0.25 ± 0.10) but was significantly greater than zero. Body weight was positively correlated to Fillet%, Viscera%, and VisceFat%, and negatively correlated to Head%. These results indicate that these carcass processing traits can be modified by directional selection and that selection for greater BW would lead to an increase of Fillet%, Viscera% and VisceFat% and a decrease of Head%.

Muscle lipid content (MuscleLipid%) was determined using two indirect methods: measurements with a Torry Fish Fatmeter® (TorryLipid) and determination of the percentage of dry matter content (MuscleDry%) via desiccation. Both measures were highly correlated to chemical measurements of MuscleLipid%. Regression analysis indicated a superior predictive value of TorryLipid suggesting that MuscleLipid% may be evaluated via rapid, non lethal measurements with a Torry Fish Fatmeter. Heritability estimates of TorryLipid and MuscleDry% differed significantly from zero (TorryLipid: 0.28 ± 0.12, MuscleDry%: 0.36 ± 0.14) indicating that MuscleLipid% could be lowered by directional selection. TorryLipid and MuscleDry% were weakly correlated to body weight and carcass processing traits suggesting that simultaneous improvement of MuscleLipid% and other carcass quality traits may require definition of multi-trait selection indices.

The purpose of this study was to develop and compare two methods for measurement of red-area coverage in white-red ornamental (koi) carp. One progeny produced by crossing two white-red koi breeders was analyzed. Among 49 fish in the progeny, 7 fish (14.3%) were solid white, 36 fish (73.5%) were white-red, and 6 fish (12.2%) were solid red. The red-area coverage in all white-red fish was determined by analysis of digital photographs using the image editing software Adobe® PhotoDeluxe® Business Edition (method I) and the specialized image analysis software Image-Pro® Plus (method II). The red-area coverage in white-red fish was highly variable, from 0.08 to 68.4%. The difference in red-area coverage for individual fish when comparing these two methods varied from 0.04 to 2.75% with a mean value of 1.03 ± 0.82% (SD). Class distributions of white-red fish with regard to red-area coverage determined by methods I and II did not differ significantly. The obtained data show that both methods can be successfully used for quantitative measurement of color patches in koi. Analysis of frequency distribution of red-area coverage in all fish (including solid white and solid red) showed that fish were clearly divided into two groups with regard to background color: fish with white background (which includes solid white and white-red fish), and solid red fish. The present study confirms that measuring the relative red body coverage gives a valuable insight into the quantitative description of color variability in koi and provides further information for the better understanding of inheritance of this trait. The development and application of new advanced methods for measurement of red-area coverage may stimulate further studies on this subject.