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7 - Morphometrics, and Other Examples

from Part III - Numerical Inference for General Systems

Published online by Cambridge University Press:  05 March 2014

Fred L. Bookstein
Affiliation:
University of Washington and Universität Wien, Austria
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Summary

Biological forms are particularly highly organized systems. Here in 2013, morphometries is the careful construction of a framework for quantification of these systems that supports pattern analyses over pointlike, curvelike, or surfacelike image data represented in ways that highlight their organized aspects. Beyond all the geometry, its methods align well with the toolkit introduced in the previous chapter, the singular-value decomposition (SVD) in its three different guises. But the applications context for these tools has been optimized by massive intellectual investment in the structure of variables a priori, a strategy aligned with the criteria of Section 6.3.2 about where good sets of measurements come from. Morphometrics is my favorite example of the real work actually involved in setting up that numerical information from images of living or once-living creatures, so as to be fully open to both abduction (surprise) and consilience (confirmation by measurements via other quantitative protocols).

Right at the core of morphometrics is a particularly careful construal of what we mean by “shape measurement” – how raw information from images of living or once-living creatures, modulated by the installed knowledge base of comparative anatomy, is transformed into the geometry and algebra that allow us to pursue the theories and explanations that govern this domain of organized form. This process, the rearrangement of intuitive turn-of-the-20th-century ideas of biometrics so as to suit modern approaches to numerical inference in organized systems, culminated only recently, from 1980 through 2005 or so, in the hands of the present author in collaboration with a range of colleagues including W. D. K. Green, James Rohlf, Kanti Mardia, John Kent, Dennis Slice, and Paul O'Higgins.

Type
Chapter
Information
Measuring and Reasoning
Numerical Inference in the Sciences
, pp. 402 - 478
Publisher: Cambridge University Press
Print publication year: 2014

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