Abel, K. M. and Drew, E. A. 1985. Response of Halimeda metabolism to various environmental parameters. Proc. 5th Int. Coral Reef Congr., Tahiti 5, 21–26.Google Scholar

Adey, W. H. 1978. Coral reef morphogenesis: a multidimensional model. Science 202, 831–837.CrossRefGoogle ScholarPubMed

Adey, W. H., Macintyre, I. G., Stuckenrath, R., and Dill, R. F. 1977. Relict barrier reef system of St. Croix: its implications with respect to late Cenozoic coral reef development in the Western Atlantic. Proc. 3rd Int. Coral Reef Symp., Miami 2, 15–21.Google Scholar

Agassiz, A. 1898 A visit to the Great Barrier Reef of Australia in the steamer Croydon during April and May, 1896. Bull. Mus. Comp. Zool. Harvard Coll. 28, 95–148.Google Scholar

Aharon, P. and Chappell, J. 1986. Oxygen isotopes, sea level changes and the temperature history of a coral reef environment in New Guinea over the last 105 years. Palaeogeog. Palaeoclimatol. Palaeoecol. 56, 337–379.CrossRefGoogle Scholar

Aharon, P., Chappell, J., and Compston, W. 1980. Stable isotope and sea-level data from New Guinea supports Antarctic ice-surge theory of ice ages. Nature 283, 649–651.CrossRefGoogle Scholar

Ahmad, W. and Neil, D. T. 1994. An evaluation of Landsat Thematic Mapper (TM) digital data for discriminating coral reef zonation: Heron Reef (GBR). Int. J. Remote Sensing 15, 2583–2597.CrossRefGoogle Scholar

Aller, R. C. and Dodge, R. E. 1974. Animal–sediment relations in a tropical lagoon, Discovery Bay, Jamaica. J. Mar. Res. 32, 209–232.Google Scholar

Alonghi, D. M. and McKinnon, A. D. 2005. The cycling and fate of terrestrially-derived sediments and nutrients in the coastal zone of the Great Barrier Reef shelf. Mar. Poll. Bull. 51, 239–252.CrossRefGoogle Scholar

Andrefouet, S., Berkelmans, R., Odriozola, L., et al. 2002. Choosing the appropriate spatial resolution for monitoring coral bleaching events using remote sensing. Coral Reefs 21, 147–154.Google Scholar

Andrefouet, S., Kramer, P., Torres-Pulliza, D., et al. 2003. Multi-site evaluation of IKONOS data for classification of tropical coral reef environments. Remote Sens. Environ. 88, 128–143.CrossRefGoogle Scholar

Andrews, E. C. 1902. Preliminary note on the geology of the Queensland coast. Proc. Linn. Soc. N.S.W. 2, 146–185.Google Scholar

Andrews, E. C. 1922. Contributions to the hypothesis of coral reef formation. J. Proc. Roy. Soc. N.S.W. 56, 10–38.Google Scholar

Andrews, J. 1983. Lagoon–ocean interactions. In Baker, J., Carter, R., Sammarco, P., and Stark, K. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 403–408.Google Scholar

Andrews, J. C. and Bode, L. 1988. Tides of the central Great Barrier Reef. Continent. Shelf Res. 8, 1057–1085.CrossRefGoogle Scholar

Andrews, J. C., Dunlap, W. C., and Bellamy, N. F. 1984. Stratification in a small lagoon in the Great Barrier Reef. Austral. J. Mar. Freshw. Res. 35, 273–284.CrossRefGoogle Scholar

Angwenyi, C. M. and Rydberg, L. 2005. Wave-driven circulation across the coral reef at Bamburi Lagoon, Kenya. Estuar. Coast. Shelf Sci. 63, 447–454.CrossRefGoogle Scholar

Anthony, K. R. N. 2000. Enhanced particle-feeding capacity of corals on turbid reefs (Great Barrier Reef, Australia). Coral Reefs 19, 59–67.CrossRefGoogle Scholar

Anthony, K. R. N. and Fabricius, K. E. 2000. Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. J. Exp. Mar. Biol. Ecol. 252, 221–253.CrossRefGoogle ScholarPubMed

Anthony, K. and Larcombe, P. 2002. Coral reefs in turbid waters: sediment-induced stresses in corals and likely mechanisms of adaptation. Proc. 9th Int. Coral Reef Symp., Bali 1, 239–244.Google Scholar

Asano, D. 1942. Coral reefs of the South Sea Islands. Tokyo Imp. Univ. Geol. Palaeo. Inst. Rept. 39, 1–19.Google Scholar

Assaoui, D. M., McNeil, D. F., and Kirschvink, J. L. 1990. Magnetostratigraphic dating of Mururoa Atoll and global eustasy. Earth Planet. Sci. Lett. 97, 107–112.Google Scholar

Aston, J. P. 1995. The relative mobilities of coral cays on the Great Barrier Reef can be modelled. M.Sc. thesis, James Cook University, Townsville.

Atkinson, M. J., Smith, S. V., and Stroup, E. D. 1981. Circulation in Enewetak Atoll lagoon. Proc. 4th Int. Coral Reef Symp., Manila 1, 335–338.Google Scholar

Australian Government Mission and the Maldives Marine Research Centre. 2005. An Assessment of Damage to Maldivian Coral Reefs and Baitfish Populations from the Indian Ocean Tsunami. Canberra, Commonwealth of Australia.

Australian Greenhouse Office. 2005. Climate Change: Risk and Vulnerability. Canberra, Australian Greenhouse Office.

Australian Institute of Marine Science. 2001. Big Bank Shoals of the Timor Sea. Available online at http://www.aims.gov.au/pages/reflib/bigbank/pages/66-04

Australian Institute of Marine Science. 2005. Ancient mangrove forests discovered under reef. Available online at http://www.aims.gov.au/news/pages/media-release-20050217.html

Ayling, A. M. and Ayling, A. L. 1985. A Preliminary Survey of Coastal Reefs in the Cape Tribulation Region. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Ayling, A. M. and Ayling, A. L. 1987. Is silt run-off affecting coral communities on the Cape Tribulation fringing reefs? In Baldwin, C. L. (ed.) Fringing Reef Workshop: Science Industry and Management. Townsville, Great Barrier Reef Marine Park Authority, pp. 83–85.Google Scholar

Ayling, A. M. and Ayling, A. L. 1995. A Preliminary Survey of Benthic Communities on Fringing Reefs in the Middle Cairns Section. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Ayling, A. M. and Ayling, A. L. 1999. Medium-Term Changes in Coral Populations of Fringing Reefs at Cape Tribulation. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Ayling, A., Ayling, A., and Berkelmans, R. 1998. Shoalwater Bay Fringing Reef Resource Assessment. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Backshall, D. G., Barnett, J., Davies, P. J., et al. 1979. Drowned dolines: the blue holes of the Pompey Reefs, Great Barrier Reef. Bureau Min. Resources J. Austral. Geol. Geophys. 4, 99–109.Google Scholar

Baker, R. G. V. and Haworth, R. J. 2000a. Smooth or oscillating late Holocene sea-level curve? Evidence from cross-regional statistical regressions of fixed biological indicators. Mar. Geol. 163, 353–365.CrossRefGoogle Scholar

Baker, R. G. V. and Haworth, R. J. 2000b. Smooth or oscillating late Holocene sea-level curve? Evidence from the palaeo-zoology of fixed biological indicators in east Australia and beyond. Mar. Geol. 163, 367–386.CrossRefGoogle Scholar

Baker, R. G. V., Haworth, R. J., and Flood, P. G. 2001a. Inter-tidal fixed indicators of former Holocene sea levels in Australia: a summary of sites and a review of methods and models. Quatern. Int. 5, 257–273.CrossRefGoogle Scholar

Baker, R. G. V., Haworth, R. J., and Flood, P. G. 2001b. Warmer or cooler late Holocene marine palaeoenvironments? Interpreting southeast Australian and Brazilian sea-level changes using fixed biological indicators and their delta O-18 composition. Palaeogeog. Palaeoclimatol. Palaeoecol. 168, 249–272.CrossRefGoogle Scholar

Bard, E., Hamelin, B., and Fairbanks, R. 1990. U–Th ages obtained by mass spectrometry in corals from Barbados: sea level during the past 130 000 years. Nature 346, 456–458.CrossRefGoogle Scholar

Bard, E., Hamelin, B., Arnold, M., et al. 1996. Deglacial sea-level record from Tahiti corals and the timing of global meltwater discharge. Nature 382, 241–244.CrossRefGoogle Scholar

Barham, A. 1983. Preliminary Report to the Research and Exploration Committee of the National Geographic Society on Part 1 (Reef and Mangrove Coring Expedition) of the Torres Strait Palaeo-Environmental Research Program, July–Sept, 1983. London, Department of Human Environment, Institute of Archaeology, and Department of Geography, University College London.

Barnes, D. and Chalker, B. 1990. Calcification and photosynthesis in reef-building corals and algae. In Dubinsky, Z. (ed.) Ecosystems of the World, vol. 25, Coral Reefs. Amsterdam, Elsevier, pp. 109–131.Google Scholar

Barnes, D. J. and Lough, J. M. 1996. Coral skeletons: storage and recovery of environmental information. Glob. Change Biol. 2, 569–582.CrossRefGoogle Scholar

Barnes, R. D. 1984. Morphogenesis of a nearshore fringing reef. Hons. thesis, James Cook University, Townsville.

Bassett, S. E., Milne, G. A., Mitrovica, J. X., and Clark, P. U. 2005. Ice sheet and solid earth influences on far-field sea-level histories. Science 309, 925–928.CrossRefGoogle ScholarPubMed

Beach Protection Authority Queensland. 1989. Green Island Data Report. Brisbane.

Beaman, R., Larcombe, P., and Carter, R. M. 1994. New evidence for the Holocene sea-level high from the inner shelf, central Great Barrier Reef, Australia. J. Sed. Res. A: Sed. Petrol. Processes 64, 881–885.Google Scholar

Beaton, A. M. 1978. Archaeology and the Great Barrier Reef. Phil. Trans. Roy. Soc. Lond. B 234, 141–147.CrossRefGoogle Scholar

Bell, A. 1982. LANDSAT looks at the Great Barrier Reef. Ecos 31, 3–8.Google Scholar

Bellwood, D. R., Hughes, T. P., Folke, C., and Nystrom, M. 2004. Confronting the coral reef crisis. Nature 429, 827–833.CrossRefGoogle ScholarPubMed

Belperio, A. P. 1978. Inner shelf sedimentation model for the Townsville Region, Great Barrier Reef. Ph.D. thesis, James Cook University, Townsville.

Belperio, A. 1979a. Negative evidence for a mid-Holocene high sea level along the coastal plain of the Great Barrier Reef province. Mar. Geol. 32, M1–M9.CrossRefGoogle Scholar

Belperio, A. P. 1979b. The combined use of wash load and bed material load rating curves for the calculation of total load: an example from the Burdekin River, Australia. Catena 6, 317–329.CrossRefGoogle Scholar

Belperio, A. 1983a. Late Quaternary terrigenous sedimentation in the Great Barrier Reef lagoon. In Baker, J., Carter, R., Sammarco, P., and Stark, K. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 71–76.Google Scholar

Belperio, A. P. 1983b. Terrigenous sedimentation in the central Great Barrier Reef lagoon: a model from the Burdekin region. B.M.R.J. Austral. Geol. Geophys. 8, 179–190.Google Scholar

Benbow, D. D. 1980. The petroleum prospects of the Great Barrier Reef region. Austral. Petrol. Explor. Ass. J. 20, 159–175.Google Scholar

Bennett, I. 1973. Brief notes on the zonation and intertidal invertebrate fauna of Low Isles and Heron Island reefs. Unpublished field notes for the 2nd Int. Coral Reef Symp.

Bird, E. C. F. 1970. The steep coast of the Macalister Range, north Queensland, Australia. J. Trop. Geog. 31, 33–39.Google Scholar

Bird, E. C. F. 1971a. The fringing reefs near Yule Point, North Queensland. Austral. Geog. Stud. 9, 107–115.CrossRefGoogle Scholar

Bird, E. C. F. 1971b. Holocene shore features at Trinity Bay, North Queensland. Search 2, 27–28.Google Scholar

Bird, E. C. F. and Hopley, D. 1969. Geomorphological features on a humid tropical sector of the Australian coast. Austral. Geog. Stud. 7, 89–108.CrossRefGoogle Scholar

Birkeland, C. (ed.) 1997. Life and Death of Coral Reefs. New York, Chapman and Hall.CrossRefGoogle Scholar

Black, K. P. and Moran, P. J. 1991. Influence of hydrodynamics on the passive dispersal and initial recruitment of larvae of Acanthasterplanci (Echinodermata, Asteroidea) on the Great Barrier Reef. Mar. Ecol. Progr. Ser. 69, 55–65.CrossRefGoogle Scholar

Black, K. P., Gay, S. L., and Andrews, J. C. 1990. Residence times of neutrally-buoyant matter such as larvae, sewage or nutrients on coral reefs. Coral Reefs 9, 105–114.CrossRefGoogle Scholar

Blackman, J. G., Winter, J. W., and King, B. R. 1986. Effects of Cyclone Winifred on coastal and island fauna. In Dutton, I. (ed.) Workshop on the Offshore Effects of Cyclone Winifred. Townsville, Great Barrier Reef Marine Park Authority, pp. 60–70.

Blakeway, D. R. 2000. Geomorphology and ecology of cellular reefs in the Houtman Abrolhos Islands, Western Australia. Ph.D. thesis, University of Western Australia, Perth.

Blanchon, P. 1995. Control on modern reef development around Grand Cayman. Ph.D. thesis, University of Alberta, Edmonton.

Blanchon, P. and Jones, B. 1995. Marine-planation terraces on the shelf around Grand Cayman: a result of stepped Holocene sea-level rise. J. Coast. Res. 11, 1–33.Google Scholar

Blanchon, P. and Shaw, J. 1995. Reef drowning during the last deglaciation: evidence for catastrophic sea-level rise and ice sheet collapse. Geology 23, 4–8.2.3.CO;2>CrossRefGoogle Scholar

Blanchon, P., Jones, B., and Kalbfleisch, W. 1997. Anatomy of a fringing reef around Grand Cayman: storm rubble not coral framework. J. Sed. Res. 67, 1–16.Google Scholar

Blanchon, P., Jones, B., and Ford, D. C. 2002. Discovery of a submerged relic reef and shoreline off Grand Cayman: further support for an early Holocene jump in sea level. Sed. Geol. 147, 253–270.CrossRefGoogle Scholar

Bland, L. N. 2004. Surficial sediments of a fringing reef complex, Hydeaway Bay, Great Barrier Reef. M.Sc. thesis, University of Auckland, Auckland.

Bloom, A. L. 1978. Geomorphology: A Systematic Analysis of Late Cenozoic Landforms. Englewood Cliffs, NJ, Prentice Hall.Google Scholar

Bowen, J., and Bowen, M. 2002. The Great Barrier Reef: History, Science and Heritage. Cambridge, Cambridge University Press.CrossRefGoogle Scholar

Braga, J. C. and Aguirre, J. 2004. Coralline algae indicate Pleistocene evolution from deep, open platform to outer barrier reef environments in the northern Great Barrier Reef margin. Coral Reefs 23, 547–558.Google Scholar

Braithwaite, C. J. R., Dalmasso, H., Gilmour, M. A., et al. 2004. The Great Barrier Reef: the chronological record from a new borehole. J. Sed. Res. 74, 298–310.CrossRefGoogle Scholar

Brander, R. W., Kench, P. S., and Hart, D. 2004. Spatial and temporal variations in wave characteristics across a reef platform, Warraber Island, Torres Strait, Australia. Mar. Geol. 207, 169–184.CrossRefGoogle Scholar

Briggs, J. C. 1992. The marine East Indies: centre of origin? Glob. Ecol. Biol. Lett. 2, 149–156.CrossRefGoogle Scholar

Briggs, J. C. 1999. Coincident biogeographic patterns: Indo-West Pacific Ocean. Evolution 53, 326–335.CrossRefGoogle ScholarPubMed

Brinkman, R., Wolanski, E., Deleersnijder, E., McAllister, F., and Skirving, W. 2001. Oceanic inflow from the Coral Sea into the Great Barrier Reef. Estuar. Coast. Shelf Sci. 54, 655–668.CrossRefGoogle Scholar

Brodie, J. 2002. Keeping the wolf from the door: managing land-based threats to the Great Barrier Reef. Proc. 9th Int. Coral Reef Symp., Bali 2, 705–714.Google Scholar

Brodie, J., Steven, A., and Baer, M. 1997. The extent of river plumes associated with cyclone Sadie rainfall. In Steven, A. (ed.) Cyclone Sadie Flood Plumes in the Great Barrier Reef Lagoon: Composition and Consequences. Townsville, Great Barrier Reef Marine Park Authority, pp. 27–34.Google Scholar

Broecker, W. S. 1998. The end of the present interglacial: how and when? Quatern. Sci. Rev. 17, 689–694.Google Scholar

Broecker, W. S. and Henderson, G. M. 1998. The sequence of events surrounding Termination II and their implications for the cause of glacial–interglacial CO2 changes. Paleoceanography 13, 352–364.CrossRefGoogle Scholar

Bruno, J., Petas, L. E., Harvell, D., and Hettinger, A. 2003. Nutrient enrichment can increase the severity of coral diseases. Ecol. Lett. 6, 1056–1061.CrossRefGoogle Scholar

Bryan, W. H. 1928. The Queensland continental shelf. Repts. GBR Comm. 2, 45–50.Google Scholar

Bryant, E. A. and Nott, J. 2001. Geological indicators of large tsunami in Australia. Nat. Hazards 24, 231–249.CrossRefGoogle Scholar

Bryce, S., Larcombe, P., and Ridd, P. V. 1996. Sediment transport in the Normanby River estuary, northern Great Barrier Reef, Australia. In Larcombe, P., Woolfe, K. J., and Purdon, R. G. (eds.) Great Barrier Reef: Terrigenous Sediment Flux and Human Impact. Boca Raton, FL, CRC Press, pp. 40–44.Google Scholar

Bryce, S., Larcombe, P., and Ridd, P. V. 1998. The relative importance of land-directed tidal sediment transport versus freshwater flood events in the Normanby River estuary, Cape York Peninsula, Australia. Mar. Geol. 149, 55–78.CrossRefGoogle Scholar

Buckley, R. 1988. Terrace formation on sand cays of the northern Great Barrier Reef: regional or reef-scale switch? Search 19, 289–292.Google Scholar

Buddemeier, R. W. and Fautin, D. G. 1993. Coral bleaching as an adaptive mechanism: a testable hypothesis. BioScience 43, 320–326.CrossRefGoogle Scholar

Buddemeier, R. W. and Hopley, D. 1988. Turn-ons and turn-offs: cause and mechanisms of the initiation and termination of coral reef growth. Proc. 6th Int. Coral Reef Symp., Townsville 1, 253–261.Google Scholar

Buddemeier, R. W. and Kinzie, R. 1976. Coral growth. Oceanogr. Mar. Biol. Ann. Rev. 14, 183–225.Google Scholar

Buddemeier, R. W. and Oberdorfer, J. A. 1990. Climate change and island groundwater resources. In Pernetta, J. C. and Hughes, P. J. (eds.) Implications of Expected Climate Changes in the South Pacific Region, UNEP Regional Seas Reports and Studies 128. Nairobi, United Nations Environmental Programme, pp. 56–67.Google Scholar

Buddemeier, R. W., Kleypas, J. A., and Aronson, R. B. 2004. Coral Reefs and Global Climate Change: Potential Contributions of Climate Change to Stresses on Coral Reef Ecosystems. Arlington, VA, Pew Center on Global Climate Change.Google Scholar

Bunt, J. S., Williams, W. T., and Bunt, E. D. 1985. Mangrove species distribution in relation to tide at the seafront and up rivers. Austral. J. Mar. Freshw. Res. 36, 481–492.CrossRefGoogle Scholar

Bureau of Meteorology. 2005. Tropical Cyclone Ingrid. Available online at http://www.bom.gov.au/inside/services_policy/tc_ingrid/index.shtml

Burrage, D. M., Black, K. P., and Steinberg, C. R. 1995. Long-term sea-level variations in the central Great Barrier Reef. Continent. Shelf Res. 15, 981–1014.CrossRefGoogle Scholar

Burrage, D. M., Steinberg, C. R., Skirving, W. J., and Kleypas, J. A. 1996. Mesoscale circulation features of the Great Barrier Reef region inferred from NOAA Satellite imagery. Remote Sens. Environ. 56, 21–41.CrossRefGoogle Scholar

Burrage, D., Steinberg, C., Bode, L., and Black, K. 1997. Long-term current observations in the Great Barrier Reef. In Wachenfeld, D., Oliver, J., and Davis, K. (eds.) State of the Great Barrier Reef World Heritage Area Workshop. Townsville, Great Barrier Reef Marine Park Authority, pp. 21–45.Google Scholar

Burrage, D. M., Heron, M. L., Hacker, J. M., et al. 2002. Evolution and dynamics of tropical river plumes in the Great Barrier Reef: an integrated remote sensing and in situ study. J. Geophys. Res. Oceans 107, 12.CrossRefGoogle Scholar

Byron, T. 1985. Blue holes: land of coral rivers, raging currents and whirlpools. In Scuba Divers' Guide to the Whitsunday Islands. Sydney, Aqua Sports Publications, pp. 82–87.Google Scholar

Cabioch, G. and Ayliffe, L. K. 2001. Raised coral terraces at Malakula, Vanuatu, Southwest Pacific, indicate high sea level during marine isotope stage 3. Quatern. Res. 56, 357–365.CrossRefGoogle Scholar

Cabioch, G., Montaggioni, L. F., and Faure, G. 1995. Holocene initiation and development of New Caledonian fringing reefs, S.W. Pacific. Coral Reefs 14, 131–140.CrossRefGoogle Scholar

Cabioch, G., Camoin, G. F., and Montaggioni, L. F. 1999. Postglacial growth history of a French Polynesian barrier reef tract, Tahiti, Central Pacific. Sedimentology 46, 985–1000.CrossRefGoogle Scholar

Caldeira, K. and Wickett, H. E. 2003. Anthropogenic carbon and ocean pH. Nature 425, 365.CrossRefGoogle ScholarPubMed

Camoin, G. F., Colonna, M., Montaggioni, L. F., et al. 1997. Holocene sea-level changes and reef development in the southwestern Indian Ocean. Coral Reefs 4, 231–246.Google Scholar

Campbell, J. B. 1980. Human adaptation in the Quaternary. In Henderson, R. A. and Stephenson, P. J. (eds.) The Geology and Geophysics of North-Eastern Australia. Brisbane, Geological Society of Australia, pp. 402–407.Google Scholar

Cann, J. H., Harvey, N., Barnett, E. J., Belperio, A. P., and Bourman, R. P. 2002. Foraminiferal biofacies eco-succession and Holocene sealevels, Port Pirie, South Australia. Mar. Micropaleontol. 44, 31–55.CrossRefGoogle Scholar

Carbon Dioxide Information Analysis Center (CDIAC). 2005. Current greenhouse gas concentrations. Available online at http://cdiac.esd.ornl.gov/pns/current_ghg.html

Carreiro-Silva, M., McClanahan, T. R., and Kiene, W. E. 2005. The role of inorganic nutrients and herbivory in controlling micro-bioerosion of carbonate substratum. Coral Reefs 24, 214–221.CrossRefGoogle Scholar

Carter, R. M. and Johnson, D. P. 1986. Sea level controls on the post-glacial development of the Great Barrier Reef, Queensland. Mar. Geol. 71, 137–164.CrossRefGoogle Scholar

Carter, R. M., Carter, L., and Johnson, D. P. 1986. Submergent shorelines in the SW Pacific: evidence for an episodic postglacial transgression. Sedimentology 33, 629–649.CrossRefGoogle Scholar

Carter, R. M., Johnson, D. P., and Hooper, K. G. 1993. Episodic post-glacial sea-level rise and the sedimentary evolution of a tropical continental embayment (Cleveland Bay, Great Barrier Reef shelf, Australia). Austral. J. Earth Sci. 40, 229–255.CrossRefGoogle Scholar

Chalker, B. E. and Dunlap, W. C. 1983. Primary production and photoadaptation by corals on the Great Barrier Reef. In Baker, J., Carter, R., Sammarco, P., and Stark, K. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 293–298.Google Scholar

Chappell, J. 1974. Geology of coral terraces, Huon Peninsula, New Guinea: a study of Quaternary tectonic movements and sea level changes. Geol. Soc. America Bull. 85, 553–570.2.0.CO;2>CrossRefGoogle Scholar

Chappell, J. 1980. Coral morphology, diversity and reef growth. Nature 286, 249–252.CrossRefGoogle Scholar

Chappell, J. 1983. Evidence for smoothly falling sea level relative to north Queensland, Australia, during the past 6000 yr. Nature 302, 406–408.CrossRefGoogle Scholar

Chappell, J. 1994. Upper Quaternary sea levels, coral terraces, oxygen isotopes and deep-sea temperatures. J. Geog. Japan 103, 828–840.CrossRefGoogle Scholar

Chappell, J. 2002. Sea level changes forced ice breakouts in the Last Glacial cycle: new results from coral terraces. Quatern. Sci. Rev. 21, 1229–1240.CrossRefGoogle Scholar

Chappell, J. and Grindrod, J. 1984. Chenier plain formation in northern Australia. In Thom, B. G. (ed.) Coastal Geomorphology in Australia. Sydney, Academic Press, pp. 197–231.Google Scholar

Chappell, J. and Polach, H. 1991. Postglacial sea-level rise from a coral record at Huon Peninsula, Papua New Guinea. Nature 349, 147–149.CrossRefGoogle Scholar

Chappell, J. and Shackleton, N. J. 1986. Oxygen isotopes and sea level. Nature 324, 137–140.CrossRefGoogle Scholar

Chappell, J. and Veeh, H. H. 1978. Late Quaternary tectonic movements and sea-level changes at Timor and Atauro island. Geol. Soc. America Bull. 89, 356–368.2.0.CO;2>CrossRefGoogle Scholar

Chappell, J., Rhodes, E. G., Thom, H. G., and Wallensky, E. 1982. Hydroisostasy and the sea level isobase of 5500 BP in North Queensland Australia. Mar. Geol. 49, 81–90.CrossRefGoogle Scholar

Chappell, J., Chivas, A., Wallensky, E., Polach, H. A., and Aharon, P. 1983. Holocene palaeo environmental changes, central to north Great Barrier Reef, inner zone. B.M.R.J. Austral. Geol. Geophys. 8, 223–235.Google Scholar

Chappell, J., Omura, A., Ezat, T., et al. 1996. Reconciliation of late Quaternary sea-levels derived from coral terraces at Huon Peninsula with deep sea oxygen isotype records. Earth Planet. Sci. Lett. 141, 227–236.CrossRefGoogle Scholar

Chazottes, V., Campion-Alsumard, T., Peyrot-Clausard, N., and Cuet, P. 2002. The effect of eutrophication-related alterations to coral reef communities on agents and rates of bio-erosion, Reunion Island, Indian Ocean. Coral Reefs 21, 375–390.Google Scholar

Chen, D. and Krol, A. 1997. Hydrology of Heron Island, Great Barrier Reef, Australia. Devel. Sedimentol. 54, 867–884.CrossRefGoogle Scholar

Chen, J., Curran, H., White, B., and Wasserburg, G. 1991. Precise chronology of the last interglacial period: 234U–230Th data from fossil coral reefs in the Bahamas. Geol. Soc. America Bull. 103, 82–97.2.3.CO;2>CrossRefGoogle Scholar

Chivas, A., Chappell, J., Polach, H., Pillans, B., and Flood, P. 1986. Radiocarbon evidence for the timing and rate of island development, beachrock formation, and phosphatization at Lady Elliot Island, Queensland, Australia. Mar. Geol. 69, 273–287.CrossRefGoogle Scholar

Chongprasith, P. 1992. Nutrient release and nitrogen transformations resulting from resuspension of Great Barrier Reef shelf sediments. Ph.D. thesis, James Cook University, Townsville.

Church, J. A. 1987. East Australian current adjacent to the Great Barrier Reef. Austral. J. Mar. Freshw. Res. 38, 671–683.CrossRefGoogle Scholar

Church, J. A. 2001. Climate change: how fast are sea levels rising?Science 294, 802–803.CrossRefGoogle ScholarPubMed

Church, J. A. and White, N. J. 2006. A 20th century acceleration in global sea-level rise. Geophys. Res. Lett. 31, L01602.Google Scholar

Church, J. A., Andrews, J. C., and Boland, F. M. 1985. Tidal currents in the Central Great Barrier Reef. Continent. Shelf Res. 4, 515–531.CrossRefGoogle Scholar

Church, J. A., White, N. J., Coleman, R., Lambeck, K., and Mitrovica, J. X. 2004. Estimates of the regional distribution of sea level rise over the 1950–2000 period. J. Climate 17, 2609–2625.2.0.CO;2>CrossRefGoogle Scholar

Church, J. A., White, N. J., and Arblaster, J. M. 2005. Significant decadal-scale impact of volcanic eruptions on sea level and ocean heat content. Nature 438, 74–77.CrossRefGoogle ScholarPubMed

Clark, P. U., McCabe, A. M., Mix, A. C., and Weaver, A. J. 2004. Rapid rise of sea level 19 000 years ago and its global implications. Science 304, 1141–1144.CrossRefGoogle Scholar

Clarke, J. A., Farrell, W. E., and Peltier, W. R. 1978. Global changes in post-glacial sea level: a numerical calculation. Quatern. Res. 9, 265–287.CrossRefGoogle Scholar

Coastal Engineering Research Center (CERC). 1984. US Army Corps of Engineers Shore Protection Manual, vols. 1 and 2. Vicksburg, MS, CERC.

Collins, J. D. and Walker, T. A. 1985. A Drift Card Study of the Great Barrier Reef. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Collins, L. B., Zhu, Z. R., Wyrwoll, K. H., et al. 1993a. Late Quaternary evolution of coral reefs on a cool-water carbonate margin, the Abrolhos carbonate platforms, South-west Australia. Mar. Geol. 110, 203–212.CrossRefGoogle Scholar

Collins, L. B., Zhu, Z. R., Wyrwoll, K. H., et al. 1993b. Holocene growth history of a reef complex on a cool-water carbonate margin: Easter Group of the Houtman-Abrolhos, eastern Indian Ocean. Mar. Geol. 115, 29–46.CrossRefGoogle Scholar

Collins, L. B., Zhu, Z. R., Wyrwoll, K. H., and Eisenhauer, A. 2002. Geological evolution of the northern Ningaloo Reef System during the late Quaternary. Proc. 9th Int. Coral Reef Symp., Bali 1, 231–237.Google Scholar

Collins, L. B., Zhu, Z. R., Wyrwoll, K. H., and Eisenhauer, A. 2004. Late Quaternary structure and development of the northern Ningaloo Reef, Australia. Sed. Geol. 159, 81–94.CrossRefGoogle Scholar

Colorado Center for Astrodynamics Research. 2006. Global near-real-time altimetry data viewer: South East Pacific. Available online at http://argo.colorado.edu/~realtime/gsfc_global-real-time_ssh/

Colquhoun, D. G. 1979. World Shorelines Map: Pacific Indian Ocean Sector. Columbia, SC, INQUA Commission on Quaternary Shorelines.

Connell, J. H., Hughes, T. P., and Wallace, C. C. 1997. Long-term dynamics of reef crest corals on Heron Island. In Wachenfeld, D., Oliver, J., and Davis, K. (eds.) State of the Great Barrier Reef World Heritage Area Workshop. Townsville, Great Barrier Reef Marine Park Authority, pp. 114–123.Google Scholar

Cook, P. J. and Mayo, W. 1977. Sedimentology and Holocene history of a tropical estuary (Broad Sound, Queensland). Bureau Min. Resources J. Austral. Geol. Geophys. 170.Google Scholar

Cook, P. J. and Polach, H. A. 1973. A chenier sequence at Broad Sound, Queensland and evidence against a Holocene high sea level. Mar. Geol. 14, 253–268.CrossRefGoogle Scholar

Cook, P. J., Colwell, J. B., Firman, J. B., et al. 1977. The late Cainozoic sequence of southeast South Australia and Pleistocene sea-level changes. Bureau Min. Resources J. Austral. Geol. Geophys. 2, 81–88.Google Scholar

Cortes, J. N. and Risk, M. J. 1985. A reef under siltation stress, Cahuita, Costa Rica. Bull. Mar. Sci. 36, 339–356.Google Scholar

Coventry, R. J., Hopley, D., Campbell, J. B., et al. 1980. The Quaternary of northeastern Australia. In Henderson, R. A. and Stephenson, P. J. (eds.) The Geology and Geophysics of North-Eastern Australia. Brisbane, Geological Society of Australia, pp. 365–417.Google Scholar

Crossland, C. 1997. Preface. In Proc. Natl Conf. The Great Barrier Reef: Science, Use and Management. Townsville, Great Barrier Reef Marine Park Authority, pp. 1–2.Google Scholar

Crowley, G. M. and Gagan, M. K. 1995. Holocene evolution of coastal wetlands in wet-tropical Northeastern Australia. Holocene 5, 385–399.CrossRefGoogle Scholar

Cutler, K. B., Edwards, R. L., Taylor, F. W., et al. 2003. Rapid sea-level fall and deep-ocean temperature change since the last interglacial period. Earth Planet. Sci. Lett. 206, 253–271.CrossRefGoogle Scholar

Daly, R. A. 1915. The glacial control theory of coral reefs. Proc. Am. Acad. Arts Sci. 51, 155–251.CrossRefGoogle Scholar

Daly, R. A. 1919. The coral reef zone during and after the Glacial period. Am. J. Sci. 48, 136–159.CrossRefGoogle Scholar

Daly, R. A. 1934. The Changing World of the Ice Age. New Haven, CT, Yale University Press.Google Scholar

Darwin, C. R. 1838. On certain areas of elevation and subsidence in the Pacific and Indian Oceans as deduced from the study of coral formations. Proc. Geol. Soc. Lond. 2, 552–554.Google Scholar

Darwin, C. R. 1842. The Structure and Distribution of Coral Reefs. London, Smith, Elder and Co.Google Scholar

Davies, P. J. 1974. Subsurface solution unconformities at Heron Island Great Barrier Reef. Proc. 2nd Int. Coral Reef Symp., Queensland 2, 573–578.Google Scholar

Davies, P. J. 1977. Modern reef growth: Great Barrier Reef. Proc. 3rd Int. Coral Reef Symp., Miami 2, 325–330.Google Scholar

Davies, P. J. 1983. Reef growth. In Barnes, D. J. (ed.) Perspectives on Coral Reefs. Townsville, Australian Institute of Marine Science, pp. 69–106.Google Scholar

Davies, P. J. 1988. Evolution of the Great Barrier Reef: reductionist dream or expansionist vision. Proc. 6th Int. Coral Reef Symp., Townsville 1, 9–17.Google Scholar

Davies, P. J. and Hopley, D. 1983. Growth facies and growth rates of Holocene reefs in the Great Barrier Reef. Bureau Min. Resources J. Austral. Geol. Geophys. 8, 237–251.Google Scholar

Davies, P. J. and Hughes, H. 1983. High energy reef and terrigenous sedimentation, Boulder Reef, Great Barrier Reef. Bureau Min. Resources J. Austral. Geol. Geophys. 8, 201–209.Google Scholar

Davies, P. and Kinsey, D. W. 1973. Organic and inorganic factors in recent beach rock formation, Heron Island, Great Barrier Reef. J. Sed. Petrol. 43, 59–81.Google Scholar

Davies, P. J. and Kinsey, D. W. 1977. Holocene reef growth: One Tree Island, Great Barrier Reef. Mar. Geol. 24, M1–M11.CrossRefGoogle Scholar

Davies, P. J. and Marshall, J. F. 1979. Aspects of Holocene reef growth: substrate age and accretion rate. Search 10, 276–279.Google Scholar

Davies, P. J. and Marshall, J. F. 1985. Halimeda bioherms, low energy reefs, northern Great Barrier Reef. Proc. 5th Int. Coral Reef Congr., Tahiti 5, 1–7.Google Scholar

Davies, P. J. and Martin, K. 1976. Radial aragonite ooids, Lizard Island, Great Barrier Reef, Queensland, Australia. Geology 4, 120–122.2.0.CO;2>CrossRefGoogle Scholar

Davies P. J. and McKenzie, J. A. 1993. Controls on the Plio-Pleistocene evolution of the north-eastern Australian continental margin. In McKenzie, J. A., Davies, P. J., Palmer-Jackson, M. A., and Sarg, J. F. (eds.) Proceedings of the Ocean Drilling Program, vol. 133, Scientific Results, Northeast Australian Margin 1986. College Station, TX, Texas A and M University, pp. 755–762.Google Scholar

Davies, P. J. and Montaggioni, L. F. 1985. Reef growth and sea level change: the environmental signature. Proc. 5th Int. Coral Reef Congr., Tahiti 3, 477–511.Google Scholar

Davies, P. J. and Peerdeman, F. 1998. The origin of the Great Barrier Reef: the impact of Leg 133 drilling. Spec. Publ. Int. Assoc. Sedimentol. 25, 23–38.Google Scholar

Davies, P. J. and West, B. 1981. Suspended-sediment transport and water movement at One Tree Reef, Southern Great Barrier Reef. Bureau Min. Resources J. Austral. Geol. Geophys. 6, 187–195.Google Scholar

Davies, P. J., Stewart, D., Thom, G., McIntosh, E., and Kores, A. 1979. A rock and sediment drill for use on coral reefs. Bureau Min. Resources J. Austral. Geol. Geophys. Rpt. 1979/21.Google Scholar

Davies, P. J., Marshall, J. F., and Searle, D. E. 1981. Shallow inter-reefal structure of the Capricorn Group, southern Great Barrier Reef. Bureau Min. Resources J. Austral. Geol. Geophys. 6, 101–105.Google Scholar

Davies, P. J., Cucuzza, J., and Marshall, J. F. 1983. Lithofacies variations on the continental shelf east of Townsville, Great Barrier Reef. In Baker, J. T., Carter, R. M., Sammarco, P. W., and Stark, K. P. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 89–93.

Davies, P. J., Marshall, J. F., and Hopley, D. 1985. Relationships between reef growth and sea level in the Great Barrier Reef. Proc. 5th Int. Coral Reef Congr., Tahiti 3, 95–103.Google Scholar

Davies, P. J., Symonds, P. A., Feary, D. A., and Pigram, C. J. 1987. Horizontal plate motion: a key allocyclic factor in the evolution of the Great Barrier Reef. Science 238, 1697–1700.CrossRefGoogle ScholarPubMed

Davies, P. J., Symonds, P. A., Feary, D. A., and Pigram, C. J. 1989. The evolution of the carbonate platforms of north-east Australia. In Crevello, P. D. (ed.) Controls on Carbonate Platform and Basin Development, Society of Economic Paleontologists and Mineralogists Special Publication 44. Tulsa, OK, S.E.P.M., pp. 233–258.CrossRefGoogle Scholar

Davies, P. J., Briggs, J. C., Webster, J., and Montaggioni, L. 1997. Stratigraphy and lithofacies variations of the drill holes at Boulder and Ribbon 5. In Abstracts of 10th Edgeworth David Symposium, Funafuti to Mururoa: A Century of Reflections on Carbonate Reservoirs. Sydney, Sydney University, p. 37.Google Scholar

Davis, W. M. 1899. The geographical cycle. Geog. J. 14, 481–504.CrossRefGoogle Scholar

Davis, W. M. 1917. The Great Barrier Reef of Australia. Am. J. Sci. Ser. 4, 44, 339–350.CrossRefGoogle Scholar

Davis, W. M. 1928. The Coral Reef Problem. New York, American Geographical Society.Google Scholar

Day, J., Fernandes, L., Lewis, A., et al. 2003. The representative areas program for protecting biodiversity in the Great Barrier Reef World Heritage Area. Proc. 9th Int. Coral Reef Symp., Bali 2, 687–696.Google Scholar

Vaugelas, J. 1985. Sediment reworkings by Callianassid mud-shrimp in tropical lagoons: a review with perspectives. Proc. 5th Int. Coral Reef Congr., Tahiti 6, 617–622.Google Scholar

Debenay, J. P., Guiral, D., and Parra, M. 2002. Ecological factors acting on the microfauna in mangrove swamps: the case of foraminiferal assemblages in French Guiana. Estuar. Coast. Shelf Sci. 55, 509–533.CrossRefGoogle Scholar

Devlin, M. J. 1997. Offshore measurements late in the river plumes associated with cyclone Sadie. In Steven, A. D. L. (ed.) Cyclone Sadie Flood Plumes in the Great Barrier Reef Lagoon: Composition and Consequences. Townsville, Great Barrier Reef Marine Park Authority, pp. 45–54.Google Scholar

Devlin, M. J. and Brodie, J. 2005. Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Mar. Poll. Bull. 51, 9–22.CrossRefGoogle ScholarPubMed

Devlin, D., Waterhouse, J., Taylor, J., and Brodie, J. 2001. Flood Plumes in the Great Barrier Reef: Spatial and Temporal Patterns in Composition and Distribution, Research Publication 68. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Dight, I. J., Bode, L., and James, M. K. 1990a. Modeling the larval dispersal of Acanthaster planci. I. Large-scale hydrodynamics, Cairns Section, Great Barrier Reef Marine Park. Coral Reefs 9, 115–123.CrossRefGoogle Scholar

Dight, I. J., James, M. K., and Bode, L. 1990b. Modeling the larval dispersal of Acanthasterplanci. II. Patterns of reef connectivity. Coral Reefs 9, 125–134.CrossRefGoogle Scholar

Dikou, A. and Woesik, R. 2006. Survival under chronic stress from sediment load: spatial patterns of hard coral communities in the southern islands of Singapore. Mar. Poll. Bull. 52, 7–21.CrossRefGoogle ScholarPubMed

Dodge, R. E. 1982. Effects of drilling muds on the reef-building coral Montastrea annularis. Mar. Biol. 71, 141–147.CrossRefGoogle Scholar

Dodge, R. E. and Vaisnys, J. R. 1977. Coral populations and growth patterns: responses to sedimentation and turbidity associated with dredging. J. Mar. Res. 35, 715–730.Google Scholar

Dodge, R. E., Aller, R. C., and Thomson, J. 1974. Coral growth related to re-suspension of bottom sediments. Nature 247, 574–577.CrossRefGoogle Scholar

Domm, S. B. 1971. The uninhabitated cays of the Capricorn Group, Great Barrier Reef, Australia. Atoll Res. Bull. 142, 1–27.CrossRefGoogle Scholar

Done, T. J. 1982. Patterns in the distribution of coral communities across the Central Great Barrier Reef. Coral Reefs 1, 95–107.CrossRefGoogle Scholar

Done, T. J. 1983. Coral zonation: its nature and significance. In Barnes, D. (ed.) Perspectives on Coral Reefs. Townsville, Australian Institute of Marine Science, pp. 107–147.Google Scholar

Done, T. J. 1991. The debate continues: robust versus fragile reefs. Reef Encounter 9, 5–7.Google Scholar

Done, T. J. 1992a. Phase shifts in coral reef communities and their ecological significance. Hydrobiologia 247, 121–132.CrossRefGoogle Scholar

Done, T. J. 1992b. Constancy and change in some Great Barrier Reef communities: 1980–1990. Am. Zool. 32, 655–662.CrossRefGoogle Scholar

Done, T. 1992c. Effects of tropical cyclone waves on ecological and geomorphological structures on the Great Barrier Reef. Continent. Shelf Res. 12, 859–872.CrossRefGoogle Scholar

Done, T. J., Ayling, A. M., and Woesik, R. 1991. Broadscale Survey of Impacts of Cyclone Ivor on Coral Reefs, Research Publication 24. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Dong, K. 1988. El Niño and tropical cyclone frequency in the Australian region and the Northwest Pacific. Austral. Meteorol. Mag. 36, 219–225.Google Scholar

Douglas, B. C. 2001. Sea level change in the era of the recording tide gauge. In Douglas, B. C., Kearney, M. S., and Leatherman, S. P. (eds.) Sea Level Rise: History and Consequences. New York, Academic Press, pp. 37–64.Google Scholar

Drew, E. 2001. Ocean nutrients to sediment banks via tidal jets and Halimeda meadows. In Wolanski, E. (ed.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. Boca Raton, FL, CRC Press, pp. 255–267.Google Scholar

Drew, E. A. and Abel, K. M. 1983. Growth of Halimeda in reefal and inter-reefal environments. In Baker, J. T., Carter, R. M., Sammarco, P. W., and Stark, K. P. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 299–304.Google Scholar

Drew, E. A. and Abel, K. M. 1985. Biology, sedimentology and geography of the vast inter-reefal Halimeda meadows within the Great Barrier Reef province. Proc. 5th Int. Coral Reef Congr., Tahiti 5, 15–20.Google Scholar

Drew, E. A. and Abel, K. M. 1988. Studies of Halimeda. I. The distribution and species composition of Halimeda meadows throughout the Great Barrier Reef province. Coral Reefs 6, 195–205.CrossRefGoogle Scholar

Driscoll, E. M. and Hopley, D. 1967. Coastal development in a part of tropical Queensland, Australia. J. Trop. Geog. 26, 17–28.Google Scholar

Dubinsky, Z. (ed.) 1990. Ecosystems of the World, vol. 25, Coral Reefs. Amsterdam, Elsevier.Google Scholar

Dullo, W. C. 2005. Coral growth and reef growth: a brief review. Facies 51, 33–48.CrossRefGoogle Scholar

Dunbar, G. B. and Dickens, G. R. 2003. Massive siliciclastic discharge to slopes of the Great Barrier Reef platform during sea-level transgression: constraints from sediment cores between 15° S and 16° S latitude and possible explanations. Sed. Geol. 162, 141–158.CrossRefGoogle Scholar

Easton, W. H. and Olson, E. A. 1976. Radiocarbon profile of Hanauma Reef, Oahu, Hawaii. Geol. Soc. America Bull. 87, 711–719.2.0.CO;2>CrossRefGoogle Scholar

Edwards, R. J. 2001. Mid- to late Holocene relative sea-level change in Poole Harbour, southern England. J. Quatern. Sci. 16, 221–235.CrossRefGoogle Scholar

Edwards, R. L. and Horton, B. P. 2005. Developing detailed records of relative sea-level change using a foraminiferal transfer function: an example from North Norfolk, UK. Phil. Trans. Roy. Soc. Lond. A 364, 973–991.CrossRefGoogle Scholar

Edwards, R. L., Chen, J. H., Ku, T. L., and Wasserburg, G. J. 1987. Precise timing of the last interglacial period from mass spectrometric determination of thorium-230 in corals. Science 236, 1547–1553.CrossRefGoogle ScholarPubMed

Edwards, R. L., Beck, J. W., Burr, G. S., et al. 1993. A large drop in atmospheric “SUP 14” C/ “SUP 12” C and reduced melting in the Younger Dryas, documented with “SUP 230” Th ages of corals. Science 260, 962–968.CrossRefGoogle Scholar

Elvidge, C. D., Dietz, J. B., Berkelmans, R., et al. 2004. Satellite observation of Keppel Islands (Great Barrier Reef) 2002, coral bleaching using IKONOS data. Coral Reefs 23, 123–132.CrossRefGoogle Scholar

Emery, K. O., Tracey, J. I. Jr., and Ladd, H. S. 1954. Geology of Bikini and nearby atolls, Marshall Islands. U.S. Geol. Surv. Prof. Pap. 260A, 1–265.Google Scholar

Endean, R., Stephenson, W., and Kenny, R. 1956. The ecology and distribution of intertidal organisms on certain islands off the Queensland coast. Austral. J. Mar. Freshw. Res. 7, 317–342.CrossRefGoogle Scholar

Environmental Protection Agency. 2005. Interim report on severe tropical cyclone Ingrid. Available online at http://www.epa.qld.gov.au/publications/p01584aa.pdf

Esat, T. M., McCulloch, M. T., Chappell, J., Pillans, B., and Omura, A. 1999. Rapid fluctuations in sea level recorded at Huon Peninsula during the penultimate deglaciation. Science 283, 197–201.CrossRefGoogle ScholarPubMed

Fabricius, K. E. 2004. The Effects of Terrestrial Runoff of Sediments, Nutrients and Other Pollutants on Coral Reefs, Briefing Paper 3. Townsville, International Society for Reef Studies.Google Scholar

Fabricius, K. E. 2005. Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis. Mar. Poll. Bull. 50, 125–146.CrossRefGoogle ScholarPubMed

Fabricius, K. E. and De'ath, G. 2001. Biodiversity on the Great Barrier Reef: large scale patterns and turbidity related local loss of soft coral taxa. In Wolanski, E. (ed.) Oceanographic Processes on Coral Reefs: Physical and Biological Links in the Great Barrier Reef. Boca Raton, FL, CRC Press, pp. 127–144.Google Scholar

Fabricius, K. E. and Wolanski, E. 2000. Rapid smothering of coral reef organisms by muddy marine snow. Estuar. Coast. Shelf Sci. 50, 115–120.CrossRefGoogle Scholar

Fabricius, K. E., Wild, C., Wolanski, E., and Abele, D. 2003. Effects of transparent exopolymer particles and muddy terrigenous sediments on the survival of hard coral recruits. Estuar. Coast. Shelf Sci. 57, 613–621.CrossRefGoogle Scholar

Fabricius, K., De'ath, G., McCook, L., Turak, E., and Williams, D. McB. 2005. Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef. Mar. Poll. Bull. 51, 384–398.CrossRefGoogle ScholarPubMed

Fairbanks, R. G. 1989. A 17 000-yr glacio-eustatic sea level record: influence of glacial melting rates on the Younger Dryas event and deep ocean circulation. Nature 342, 637–642.CrossRefGoogle Scholar

Fairbridge, R. W. 1950. Recent and Pleistocene coral reefs of Australia. J. Geol. 58, 330–401.CrossRefGoogle Scholar

Fairbridge, R. W. 1961. Eustatic changes in sea level. Phys. Chem. Earth 4, 99–185.CrossRefGoogle Scholar

Fairbridge, R. W. 1967. Coral reefs of the Australian region. In Jennings, J. N. and Mabbutt, J. A. (eds.) Landform Studies from Australia and New Guinea. Canberra, Australian National University, pp. 386–451.Google Scholar

Fairbridge, R. W. and Teichert, C. 1947. The rampart system at Low Isles, 1928–1945. Repts. GBR Comm. 6, 1–16.Google Scholar

Fairbridge, R. W. and Teichert, C. 1948. The Low Isles of the Great Barrier Reef: a new analysis. Geog. J. 111, 67–88.CrossRefGoogle Scholar

Falconer, R. A. and Mardapitta-Hadjipandeli, L. 1986. Bathymetric and shear-stress effects on an island's wake: a computational model study. Coast. Engin. 11, 57–86.CrossRefGoogle Scholar

Falconer, R. A., Wolanski, E., and Mardapitta-Hadjipandeli, L. 1986. Modeling tidal circulation in an island's wake. J. Waterway Port, Coast. Ocean Engin. 112, 234–254.CrossRefGoogle Scholar

Falk, J. and Brownlow, A. 1989. The Greenhouse Challenge: What's to Be Done? Ringwood, Penguin.Google Scholar

Falkland, A. C. 1993. Hydrology and water management on small tropical islands. Proc. Yokohama Symp. on Hydrology of Warm Humid Regions, 263–303.Google Scholar

Falkowski, P. G., Jokiel, P. L., and Kinzie, R. A. 1990. Irradiance and corals. In Dubinsky, Z. (ed.) Ecosystems of the World, vol. 25, Coral Reefs. Amsterdam, Elsevier, pp. 89–107.Google Scholar

Feary, D. A., Symonds, P. A., Davies, P. J., Pigram, C. J., and Jarrard, R. D. 1993. Geometry of Pleistocene facies on the Great Barrier Reef outer shelf and upperslope seismic stratigraphy of Sites 819, 820 and 821. In McKenzie, J. A., Davies, P. J., Palmer-Julson, A. A., and Sarg, J. F. (eds.) Proceedings of the Ocean Drilling Program, vol. 133 Scientific Results, North-East Australian Margin. College Station, TX, Texas A and M University, pp. 535–541.Google Scholar

Ferland, M. A., Roy, P. S., and Murray-Wallace, C. V. 1995. Glacial lowstand deposits on the outer continental shelf of southeastern Australia. Quatern. Res. 44, 294–299.CrossRefGoogle Scholar

Fernandes, L., Day, J., Lewis, A., et al. 2005. Establishing representative no-take areas in the Great Barrier Reef: large-scale implementation of theory on marine protected areas. Conservat. Biol. 19, 1733–1744.CrossRefGoogle Scholar

Ferrier-Pagès, C., Gettuso, J.-P., Dallot, S., and Jaubert, J. 2000. Effect of nutrient enrichment on growth and photosynthesis of the zooxanthellae coral Stylophera pistillata. Coral Reefs 19, 103–113.CrossRefGoogle Scholar

Fielding, C. R., Trueman, J. D., Dickens, G. R., and Page, M. 2003. Anatomy of the buried Burdekin River channel across the Great Barrier Reef shelf: how does a major river operate on a tropical mixed siliciclastic/carbonate margin during sea level lowstand? Sed. Geol. 157, 291–301.CrossRefGoogle Scholar

Fisk, D. A. and Harriott, V. J. 1989. The Effects of Increased Sedimentation on the Recruitment and Sediment Dynamics of Juvenile Coral at Cape Tribulation, North Queensland, Technical Memoir 20. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Fleming, K., Johnston, P., Zwartz, D., et al. 1998. Refining the eustatic sea-level curve since the last glacial maximum using far- and intermediate-field sites. Earth Planet. Sci. Lett. 163, 327–342.CrossRefGoogle Scholar

Flood, P. G. 1977. Coral cays of the Capricorn and Bunker Groups, Great Barrier Reef Province, Australia. Atoll Res. Bull. 195, 1–24.CrossRefGoogle Scholar

Flood, P. G. 1979a. Geomorphology of Tryon Island and reef. Queensland Nat. 22, 113–125.Google Scholar

Flood, P. G. 1979b. Heron Island erosion problems. Reeflections 3, 4.Google Scholar

Flood, P. G. 1980. Cyclone “Simon” changes cays. Reeflections 6, 4.Google Scholar

Flood, P. G. 1981. Coral cays and cyclones. Beach Conservat. 42, 6.Google Scholar

Flood, P. G. 1983a. Holocene sea level data from the Southern Great Barrier Reef and Southeastern Queensland: a review. In Hopley, D. (ed.) Australian Sea Levels in the Last 15 000 Years: A Review, Monograph Series, Occas. Paper 3. Townsville, Department of Geography, James Cook University, pp. 85–92.Google Scholar

Flood, P. G. 1983b. Climatically included changes to the shape of coral cays, southern Great Barrier Reef, Australia. In Baker, J. T., Carter, R. M., Sammarco, P. W., and Stark, K. P. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 379–384.

Flood, P. G. 1984a. Changes in the Shoreline Position on Six Coral Cays, Capricorn Section, Great Barrier Reef Marine Park: A Record to 1984. Armidale, University of New England.Google Scholar

Flood, P. G. 1984b. Variability of shoreline position in five uninhabited islands of the Capricorn Section, Great Barrier Reef Marine Park. In Ward, W. T. and Saenger, P. (eds.) The Capricornia Section of the Great Barrier Reef: Past, Present and Future. Brisbane, Royal Society of Queensland and Australian Coral Reef Society, pp. 17–24.Google Scholar

Flood, P. G. 1985. Changes in Shoreline Positions on Coral Cays, Capricornia Section, Great Barrier Reef Marine Park. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Flood, P. G. 1986. Sensitivity of coral cays to climatic variations, southern Great Barrier Reef, Australia. Coral Reefs 5, 13–18.CrossRefGoogle Scholar

Flood, P. G. 1988. Shoreline changes on coral cays, Capricornia section, Great Barrier Reef Marine Park, Australia. Proc. 6th Int. Coral Reef Symp., Townsville 2, 219–224.Google Scholar

Flood, P. G. and Frankel, E. 1989. Late Holocene higher sea level indicators from eastern Australia. Mar. Geol. 90, 193–195.CrossRefGoogle Scholar

Flood, P. G. and Heatwole, H. 1986. Coral cay instability and species turnover of plants at Swain Reefs, Southern Great Barrier Reef, Australia. J. Coast. Res. 2, 479–496.Google Scholar

Flood, P. G. and Jell, T. S. 1977. The effect of cyclone ‘David’ (January 1976) on the sediment distribution patterns on Heron Reef, Great Barrier Reef, Australia. Proc. 3rd Int. Coral Reef Symp., Miami 2, 119–125.Google Scholar

Flood, P. G. and Orme, G. R. 1988. Mixed siliciclastic/carbonate sediments of the northern Great Barrier Reef Province, Australia. Devel. Sedimentol. 42, 175–205.CrossRefGoogle Scholar

Flood, P. G., Orme, G. R., and Scoffin, T. P. 1978. An analysis of the textural variability displayed by inter-reefal sediments of the impure carbonate facies in the vicinity of the Howick Group. Phil. Trans. Roy. Soc. Lond. A 291, 73–83.CrossRefGoogle Scholar

Flood, P. G., Harjanto, S., and Orme, G. R. 1979. Carbon-14 dates, Lady Elliot Island, Great Barrier Reef., Queensland Govt. Min. J.444–447.Google Scholar

Foreman, M. G. G. 1977. Manual for Tidal Height Analysis and Prediction, Pacific Marine Science Report 77–10. Sidney, British Columbia, Institute of Ocean Science.Google Scholar

Fosberg, F. R. 1961. Description of Heron Island. Atoll Res. Bull. 82, 1–4.CrossRefGoogle Scholar

Foster, D. F. 1974. Geomechanical properties of coral rock. B. E. Hons. thesis, James Cook University, Townsville.

Frankel, E. 1974. Recent sedimentation in the Princess Charlotte Bay area, Great Barrier Reef Province. Proc. 2nd Int. Coral Reef Symp., Queensland 2, 355–369.Google Scholar

Frith, C. A. 1982. Circulation in a platform reef lagoon, One Tree Reef, southern Great Barrier Reef. Proc. 4th Int. Coral Reef Symp., Manila 1, 347–354.Google Scholar

Frith, C. A. 1983a. Some aspects of lagoonal circulation and sedimetation One Tree Reef, Great Barrier Reef. Bureau Min. Resources J. Austral. Geol. Geophys. 8, 211–221.Google Scholar

Frith, C. A. 1983b. Windward reef circulation, Davies Reef, Central Great Barrier Reef. In Baker, J. T., Carter, R. M., Sammarco, P. W., and Stark, P. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 435–440.Google Scholar

Frith, C. A. and Mason, L. B. 1986. Modelling wind driven circulation One Tree Reef, Southern Great Barrier Reef. Coral Reefs 4, 201–211.CrossRefGoogle Scholar

Furnas, M. 2003. Catchments and Corals: Terrestrial Run-Off to the Great Barrier Reef. Townsville, Australian Institute of Marine Science.Google Scholar

Furnas, M. J. and Mitchell, A. W. 1986. Phytoplankton dynamics in the central Great Barrier Reef. I. Seasonal changes in biomass and their relation to intrusive activity. Continent Shelf Res. 6, 363–384.CrossRefGoogle Scholar

Furnas, M. J. and Mitchell, A. W. 1996. Nutrient inputs into the central Great Barrier Reef (Australia) from subsurface intrusions of coral sea waters: a two-dimensional displacement model. Continent. Shelf Res. 16, 1127–1148.CrossRefGoogle Scholar

Furnas, M. and Mitchell, A. W. 2001. Runoff of terrestrial sediment and nutrients into the Great Barrier Reef World Heritage Area. In Wolanski, E. (ed.) Oceanographic Processes Of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. Boca Raton, FL, CRC Press, pp. 37–51.Google Scholar

Gagan, M. K., Sandstrom, M. W., and Chivas, A. R. 1987. Restricted terrestrial carbon input to the continental shelf during Cyclone Winifred: implications for terrestrial runoff to the Great Barrier Reef Province. Coral Reefs 6, 113–119.CrossRefGoogle Scholar

Gagan, M. K., Johnson, D. P., and Carter, R. M. 1988. The Cyclone ‘Winifred’ storm bed, central Great Barrier Reef shelf, Australia. J. Sed. Petrol. 58, 845–856.Google Scholar

Gagan, M. K., Chivas, A. R., and Herczeg, A. L. 1990. Shelf-wide erosion, deposition, and suspended sediment transport during cyclone Winifred, central Great Barrier Reef, Australia. J. Sed. Petrol. 60, 456–470.CrossRefGoogle Scholar

Gagan, M. K., Chivas, A. R., and Isdale, P. J. 1994. High-resolution isotopic records from corals using ocean temperature and mass-spawning chronometers. Earth Planet. Sci. Lett. 121, 549–558.CrossRefGoogle Scholar

Gagan, M. K., Chivas, A. R., and Isdale, P. J. 1996. Timing coral-based climatic histories using 13C enrichments driven by synchronized spawning. Geology 24, 1009–1012.2.3.CO;2>CrossRefGoogle Scholar

Gagan, M. K., Ayliffe, L. K., Hopley, D., et al. 1998. Temperature and surface–ocean water balance of the mid-Holocene tropical Western Pacific. Science 279, 1014–1018.CrossRefGoogle ScholarPubMed

Gagan, M. K., Ayliffe, L. K., Opdyke, B. N., et al. 2002. Coral oxygen isotope evidence for recent groundwater fluxes to the Australian Great Barrier Reef. Geophys. Res. Lett. 29, 1–4.CrossRefGoogle Scholar

Gallup, C. D., Cheng, H., Taylor, F. W., and Edwards, R. L. 2002. Direct determination of the timing of sea level change during termination II. Science 295, 310–313.CrossRefGoogle ScholarPubMed

Gardiner, J. S. 1898. The building of atolls. Proc. Int. Congr. Zool.119–124.Google Scholar

Gehrels, W. R. 1994. Determining relative sea-level change from salt-marsh foraminifera and plant zones on the coast of Maine, USA. J. Coast. Res. 10, 990–1009.Google Scholar

Gehrels, W. R., Roe, H. M., and Charman, D. J. 2001. Foraminifera, testate amoebae and diatoms as sea-level indicators in UK saltmarshes: a quantitative multiproxy approach. J. Quatern. Sci. 16, 201–220.CrossRefGoogle Scholar

Gibb, J. G. 1986. A New Zealand regional eustatic sea level curve and its application for determination of vertical tectonic movements. Bull. Roy. Soc. New Zealand 24, 377–395.Google Scholar

Gill, E. D. and Hopley, D. 1972. Holocene sea levels in eastern Australia: a discussion. Mar. Geol. 12, 223–242.CrossRefGoogle Scholar

Gischler, E. 2003. Holocene lagoonal development in the isolated carbonate platforms off Belize. Sedi. Geol. 159, 113–132.CrossRefGoogle Scholar

Gischler, E. and Hudson, J. H. 1998. Holocene development of three isolated carbonate platforms, Belize, Central America. Mar. Geol. 144, 333–347.CrossRefGoogle Scholar

Gleghorn, R. J. 1947. Cyclone damage on the Great Barrier Reef. Repts GBR Comm. 6, 17–19.Google Scholar

Goodwin, I. D. 1998. Did changes in Antarctic ice volume influence late Holocene sea-level lowering?Quatern. Sci. Rev. 17, 319–332.CrossRefGoogle Scholar

Goreau, T. F. and Land, L. S. 1974. Fore reef morphology and depositional processes, North Jamaica. In Laporte, L. F. (ed.) Reefs in Time and Space, Society of Economic Paleontologists and Mineralogists Special Publication 18. Tulsa, OK, S.E.P.M., pp. 17–89.CrossRefGoogle Scholar

Gourlay, M. R. 1983a. Accretion and erosion on coral cays and some consequent implications for management of marine parks. In Baker, J., Carter, R., Sammarco, P., and Stark, K. (eds.) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 475–482.Google Scholar

Gourlay, M. R. 1983b. Interaction between actual processes and engineering works on the leeward side of a coral cay: a case study of Heron Island on the Great Barrier Reef. Proc. Int. Conf. Coastal and Port Engineering in Developing Countries, Colombo, 1468–1482.Google Scholar

Gourlay, M. R. 1988. Coral cays: products of wave action and geological processes in a biogenic environment. Proc. 6th Int. Coral Reef Symp., Townsville 2, 491–496.Google Scholar

Gourlay, M. R. 1990. Wave set-up and currents on reefs: cay formation and stability. Proc. Engineering in Coral Reef Regions Conf., Townsville, 163–178.Google Scholar

Gourlay, M. R. 1993. Wave set-up and wave-generated currents on coral reefs. Proc. 11th Australasian Conf. Coastal and Ocean Engineering, Townsville, 479–484.Google Scholar

Gourlay, M. R. 1994. Wave transformation on a coral reef. Coast. Engin. 23, 17–42.CrossRefGoogle Scholar

Gourlay, M. R. 1996a. Wave set-up on coral reefs. I. Set-up and wave-generated flow on an idealized two dimensional horizontal reef. Coast. Engin. 27, 161–193.CrossRefGoogle Scholar

Gourlay, M. R. 1996b. Wave set-up on coral reefs. II. Set-up on reefs with various profiles. Coast. Engin. 28, 17–55.CrossRefGoogle Scholar

Gourlay, M. R. and Colleter, G. 2005. Wave-generated flow on coral reefs: an analysis for two-dimensional horizontal reef-tops with steep faces. Coast. Engin. 52, 353–387.CrossRefGoogle Scholar

Gourlay, M. R. and Flood, P. G. 1981. Impact of coastal engineering works upon a coral cay: Heron Island. Conf. Environ. Engineering, Townsville 6, 159–163.Google Scholar

Gourlay, M. R. and Hacker, J. L. F. 1991. Raine Island Coastal Processes and Sedimentology, Department of Civil Engineering Report CH40/91. Brisbane, University of Queensland.Google Scholar

Graham, T. L. 1993. Geomorphological response of continental shelf and coastal environments to the Holocene transgression: Central Great Barrier Reef. Ph.D. thesis, James Cook University, Townsville.

Great Barrier Reef Marine Park Authority. 2001. Great Barrier Reef Catchment Water Quality Plan: Report to Ministerial Council on Targets for Pollutant Loads. Townsville, Great Barrier Reef Marine Park Authority.

Great Barrier Reef Marine Park Authority. 2003. Basis for Zoning Decisions Report: Describing the Issues, Public Comments and Management Responses for the Proposed Zoning. Townsville, Great Barrier Reef Marine Park Authority.

Great Barrier Reef Marine Park Authority. 2004. Great Barrier Reef Marine Park Zoning Plan 2003. Townsville, Great Barrier Reef Marine Park Authority. Available online at http://www.gbrmpa.gov.au/

Green Island Management Committee. 1980. Green Island Management Plan Queensland. Brisbane, National Parks and Wildlife Service.

Griffin, D., Middleton, J., and Bode, L. 1987. The tidal and longer-period circulation of Capricornia, Southern Great Barrier Reef. Austral. J. Mar. Freshw. Res. 38, 461–474.CrossRefGoogle Scholar

Griffin, G. M. 1974. Dredging in the Florida Keys: Case History of a Typical Dredge–Fill Project in the Northern Florida Keys – Effects on Water Depth, Sedimentation Rates and Biota. Fort Pierce, FL, Harbor Branch Foundation.Google Scholar

Grigg, R. W. 1992. Coral reef environmental science: truth versus the Cassandra syndrome. Coral Reefs 11, 183–186.CrossRefGoogle Scholar

Grigg, R. W. 1994a. Science management of the world's fragile coral reefs. Coral Reefs 13, 1.CrossRefGoogle Scholar

Grigg, R. W. 1994b. Coral reef environmental science: truth versus a false dichotomy. Reef Encounter 15, 9–10.Google Scholar

Grigg, R. W. 1998. Holocene coral reef accretion in Hawaii: a function of wave exposure and sea-level history. Coral Reefs 17, 263–272.CrossRefGoogle Scholar

Grigg, R. W. 2002. Coral reef evolution: short-term instability versus evolutionary stasis. Integr. Coast. Zone Mgmt Dec. 2002, 65–68.Google Scholar

Grigg, R. W., Grossman, E. E., Earle, S. A., et al. 2002. Drowned reefs and antecedent karst topography, Au'au Channel, S. E. Hawaiian Islands. Coral Reefs 21, 73–82.CrossRefGoogle Scholar

Grimes, K. G. 1980. The Tertiary geology of North Queensland. In Henderson, R. A. and Stephenson, P. J. (eds.) The Geology and Geophysics of Northeastern Australia. Brisbane, Geological Society of Australia, pp. 329–347.Google Scholar

Grimes, K. G. 1982. Drill site report, AIMS Davies No. 1. Geol. Surv. Queensland Rec. 18.

Grindrod, J. and Rhodes, E. 1984. Holocene sea-level history of a tropical estuary: Missionary Bay, North Queensland. In Thom, B. (ed.) Coastal Geomorphology of Australia. Sydney, Academic Press, pp. 151–178.Google Scholar

Grindrod, J., Moss, P., and Kaars, S. 1999. Late Quaternary cycles of mangrove development and decline on the north Australian continental shelf. J. Quatern. Sci. 14, 465–470.3.0.CO;2-E>CrossRefGoogle Scholar

Grossman, E. E., Fletcher, C. H., and Richmond, B. M. 1998. The Holocene sea-level highstand in the equatorial Pacific: analysis of the insular paleo sea-level database. Coral Reefs 17, 309–327.CrossRefGoogle Scholar

Guilcher, A. 1988. Coral Reef Geomorphology. Chichester, John Wiley.Google Scholar

Guinotte, J. M., Buddemeier, R. W., and Kleypas, J. A. 2003. Future coral reef habitat marginality: temporal and spatial effects of climate change in the Pacific basin. Coral Reefs 22, 551–558.CrossRefGoogle Scholar

Halley, R. B. and Yates, K. K. 2000. Will reef sediments buffer corals from increased global CO2?Proc. 9th Int. Coral Reef Symp., Bali, Abstr. 248.Google Scholar

Hallock, P. and Schlager, W. 1986. Nutrient excess and the demise of coral reefs and carbonate platforms. Palaios 1, 389–398.CrossRefGoogle Scholar

Hamner, W. M. and Hauri, I. R. 1977. Fine-scale surface currents in the Whitsunday Islands, Queensland, Australia: effect of tide and topography. Austral. J. Mar. Freshw. Res. 428, 333–359.CrossRefGoogle Scholar

Hamner, W. M. and Hauri, I. R. 1981. Effects of island mass: water-flow and plankton pattern around a reef in the Great Barrier Reef lagoon, Australia. Limnol. Oceanogr. 26, 1084–1102.CrossRefGoogle Scholar

Hardy, T. A. and Young, I. R. 1991. Modelling spectral wave transformation on a coral reef flat. Proc. 10th Australasian Conf. Coastal and Ocean Engineering, Auckland, 345–350.Google Scholar

Hardy, T. A., Young, I. R., Nelson, R. C., and Gourlay, M. R. 1991a. Wave attenuation on a coral reef. Austral. Civ. Engin. Trans. CE33, 17–22.Google Scholar

Hardy, T. A., Young, I. R., Nelson, R. C., and Gourlay, M. R. 1991b. Wave attenuation on an offshore coral reef. Proc. 22nd Coastal Engineering Conf., Delft 1, 330–344.CrossRefGoogle Scholar

Hardy, T. A., Mason, L. B., and McConochie, J. D. 2000. A wave model for the Great Barrier Reef. Ocean Engin. 28, 45–70.CrossRefGoogle Scholar

Hardy, T. A., McConochie, J. D., and Mason, L. B. 2003. Modeling tropical cyclone wave population of the Great Barrier Reef. J. Waterway, Port, Coast. Ocean Engin. 129, 104–113. (Model available online at http://mmu.jcu.edu.au)CrossRefGoogle Scholar

Hardy, T. A., Mason, L. B., and Astorquia, A. 2004. The frequency of surge plus tide during tropical cyclones for selected open coast locations along the Queensland east coast. Unpublished report. Townsville, Marine Modelling Unit, James Cook University.

Harriott, V. J. 1999. Coral growth in subtropical eastern Australia. Coral Reefs 18, 281–291.CrossRefGoogle Scholar

Harriott, V. J. and Banks, S. A. 2002. Latitudinal variation in coral communities in eastern Australia: a qualitative biophysical model of factors regulating coral reefs. Coral Reefs 21, 83–94.CrossRefGoogle Scholar

Harris, P. T. 1988. Sediments, bedform and bedload transport pathways on the continental shelf adjacent to Torres Strait, Australia – Papua New Guinea. Continent. Shelf Res. 8, 979–1003.CrossRefGoogle Scholar

Harris, P. T. 1991. Sedimentation at the junction of the Fly River delta and northern Great Barrier Reef. In Lawrence, D. and Cansfield-Smith, T. (eds.) Sustainable Development for Traditional Inhabitants of the Torres Strait Region. Townsville, Great Barrier Reef Marine Park Authority, pp. 59–85.Google Scholar

Harris, P. T. 1995. Muddy waters: the physical sedimentology of Torres Strait. In Recent Advances in Marine Science and Technology, Proc. Pacific Congress on Marine Science and Technology, pp. 149–160.Google Scholar

Harris, P. T. 1999. Discussion: sequence architecture during the Holocene transgression – an example from the Great Barrier Reef shelf, Australia: comment. Sedi. Geol. 125, 235–239.Google Scholar

Harris, P. T. and Davies, P. J. 1989. Submerged reefs and terraces on the shelf edge of the Great Barrier Reef, Australia. Coral Reefs 8, 87–89.CrossRefGoogle Scholar

Harris, P. T., Davies, P. J., and Marshall, J. F. 1990. Late Quaternary sedimentation on the Great Barrier Reef continental shelf and slope east of Townsville, Australia. Mar. Geol. 94, 55–77.CrossRefGoogle Scholar

Harris, P. T., Baker, E. K., and Cole, E. R. 1993. Late Quaternary sedimentation at the Fly River–Great Barrier Reef junction (North-eastern Australia). Proc. 7th Int. Coral Reef Symp., Guam 2, 1147–1156.Google Scholar

Harris, P. T., Heap, A. D., Wassenberg, T., and Passlow, V. 2004. Submerged coral reefs in the Gulf of Carpentaria, Australia. Mar. Geol. 207, 185–191.CrossRefGoogle Scholar

Harris, P. T., Heap, A., Passlow, V., et al. 2005. Tidally incised valleys on tropical carbonate shelves: an example from the northern Great Barrier Reef, Australia. Mar. Geol. 220, 181–204.CrossRefGoogle Scholar

Hartcher, M. and Shearin, J. 1996. Developing a Corporate-Wide Network for GIS. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Harvey, N. 1977a. The identification of subsurface solution disconformities on the Great Barrier Reef, Australia, between 14° S and 17° S using shallow seismic refraction techniques. Proc. 3rd Int. Coral Reef Symp., Miami 2, 45–51.Google Scholar

Harvey, N. 1977b. Application of shallow seismic refraction techniques to coastal geomorphology: a coral reef example. Catena 4, 333–339.CrossRefGoogle Scholar

Harvey, N. 1980. Seismic investigations of a pre-Holocene substrate beneath modern reefs in Great Barrier Reef Province. Ph.D. thesis, James Cook University of North Queensland, Townsville.

Harvey, N. and Hopley, D. 1982. The relationship between modern reef morphology and the pre-Holocene substrate in the Great Barrier Reef Province. Proc. 4th Int. Coral Reef Symp., Manila 1, 549–554.Google Scholar

Harvey, N. and Searle, D. E. 1983. Seismic investigations of Late Quaternary reefal and inter-reefal sediments of the Great Barrier Reef province. In Barnes, D. J. (ed.) Perspectives on Coral Reefs. Townsville, Australian Institute of Marine Science, pp. 154–163.Google Scholar

Harvey, N., Davies, P. J., and Marshall, J. F. 1979. Seismic refraction: a tool for studying coral reef growth. Bureau Min. Resources J. Austral. Geol. Geophys. 4, 141–147.Google Scholar

Harvey, N., Belperio, A., Bourman, R., James, K., and Brunskill, G. 2001. New evidence contributing to the debate on the Holocene high sea-level stand in north east Queensland. Proc. New Zealand Geog. Soc. and Austral. Geog. Conf., Dunedin, 177–184.Google Scholar

Haslett, S. 2001. The palaeoenvironmental implications of the distribution of intertidal foraminifera in a tropical Australian estuary: a reconnaissance study. Austral. Geog. Stud. 39, 67–74.CrossRefGoogle Scholar

Haworth, R. J., Baker, R. G. V., and Flood, P. G. 2002. Predicted and observed Holocene sea-levels on the Australian coast: what do they indicate about hydro-isostatic models in far-field sites?J. Quatern Sci. 17, 581–591.CrossRefGoogle Scholar

Hayne, M. and Chappell, J. 2001. Cyclone frequency during the last 5000 years at Curacoa Island, north Queensland, Australia. Palaeogeog. Palaeoclimatol. Palaeoecol. 168, 207–219.CrossRefGoogle Scholar

Hayward, B. W., Grenfell, H. R., and Scott, D. B. 1999. Tidal range of marsh foraminifera for determining former sea-level heights in New Zealand. J. Geol. Geophys. 42, 395–413.CrossRefGoogle Scholar

Heap, A. D., Dickens, G. R., Stewart, L. K., and Woolfe, K. J. 2002. Holocene storage of siliciclastic sediment around islands on the middle shelf of the Great Barrier Reef platform, north-east Australia. Sedimentology 49, 603–621.CrossRefGoogle Scholar

Hearn, C. J. and Parker, I. N. 1988. Hydrodynamic processes on the Ningaloo coral reef, Western Australia. Proc. 6th Int. Coral Reef Symp., Townsville 2, 497–502.Google Scholar

Hearn, C. J., Atkinson, M. J., and Falter, J. L. 2001. A physical derivation of nutrient-uptake rates in coral reefs: effects of roughness and waves. Coral Reefs 20, 347–356.CrossRefGoogle Scholar

Heatwole, H. 1983. Interaction of plants and animals in development of coral cays. In Baker, J., Carter, R., Sammarco, P., and Stark, K. (eds) Proceedings of the Great Barrier Reef Conference. Townsville, James Cook University, pp. 385–390.Google Scholar

Heatwole, H. 1984. Terrestrial vegetation on coral cays, Capricornia Section, Great Barrier Reef Marine Park. In Ward, W. T. and Saenger, P. (eds.) The Capricornia Section of the Great Barrier Reef: Past, Present and Future. Brisbane, Royal Society of Queensland and Australian Coral Reef Society, pp. 87–140.Google Scholar

Hedley, C. 1925a. The natural destruction of a coral reef. Repts. GBR Comm. 1, 35–40.Google Scholar

Hedley, C. 1925b. A raised beach at the North Barnard Islands. Repts. GBR Comm. 1, 61–62.Google Scholar

Hedley, C. 1925c. Coral shingle as a beach formation. Repts. GBR Comm. 1, 66.Google Scholar

Hedley, C. 1925d. A disused river mouth at Cairns. Repts. GBR Comm. 1, 69–72.Google Scholar

Hedley, J. D., Mumby, P. J., Joyce, K. E., and Phinn, S. R. 2004. Spectral unmixing of coral reef benthos under ideal conditions. Coral Reefs 23, 60–73.CrossRefGoogle Scholar

Hekel, H. 1979. Geological Report on the AIMS Northern Cays Expedition 1979. Townsville, Australian Institute of Marine Science.Google Scholar

Hendon, H. H. and Liebmann, B. 1990. A composite study of the onset of the Australian summer monsoon. J. Atmos. Sci. 47, 2227–2240.2.0.CO;2>CrossRefGoogle Scholar

Hendon, H. H., Davidson, N. E., and Gunn, B. 1989. Australian summer monsoon onset during AMEX, 1987. Monthly Weather Rev. 117, 370–390.2.0.CO;2>CrossRefGoogle Scholar

Hendy, E. J., Gagan, M. K., and Lough, J. M. 2003. Chronological control of coral records using luminescent lines and evidence for non-stationary ENSO teleconnections in northeast Australia. Holocene 13, 187–199.CrossRefGoogle Scholar

Herman, M. E., Buddemeier, R. M., and Wheatcraft, S. W. 1986. A layered aquifer model of atoll island hydrology: validation of a computer simulation. J. Hydrol. 84, 303–322.CrossRefGoogle Scholar

Hill, D. 1974. An introduction to the Great Barrier Reef. Proc. 2nd Int. Coral Reef Symp., Queensland 2, 723–731.Google Scholar

Hill, T. M., Brooks, G. R., Duncan, D. S., and Medioli, F. S. 2003. Benthic foraminifera of the Holocene transgressive west-central Florida inner shelf: paleoenvironmental implications. Mar. Geol. 200, 263–272.CrossRefGoogle Scholar

Hillis, L. 1997. Coralgal reefs from a green alga perspective and a first carbonate budget. Proc. 8th Int. Coral Reef Symp., Panama 1, 761–766.Google Scholar

Hillis-Colinvaux, L. 1986. Halimeda growth and diversity on the deep fore-reef of Enewetak Atoll. Coral Reefs 5, 19–21.CrossRefGoogle Scholar

Hillis-Colinvaux, L. 1988. Characteristics of Halimeda meadows, with emphasis on a meadow near Eniwetok Islet, Eniwetok Atoll, Marshall Islands. Proc. 6th Int. Coral Reef Symp., Townsville 3, 119–125.Google Scholar

Hillis-Colinvaux, L. and Orme, G. R. 1988. Trends in research on the biology and geology of Halimeda. Proc. 6th Int. Coral Reef Symp., Townsville 1, 193–198.Google Scholar

Hine, A. C., Hallock, K. P., Harris, M. W., et al. 1988. Halimeda bioherms along an open seaway: Miskito Channel, Nicaraguan Rise, SW Caribbean Sea. Coral Reefs 6, 173–178.CrossRefGoogle Scholar

Hochberg, E. J., Atkinson, M. J., and Andrefouet, S. 2003. Spectral reflectance of coral reef bottom-types worldwide and implications for coral reef remote sensing. Remote Sens. Environ. 85, 159–173.CrossRefGoogle Scholar

Hoegh-Guldberg, O. 1999. Climate change, coral bleaching and the future of the world's coral reefs. Mar. Freshw. Res. 50, 839–866.CrossRefGoogle Scholar

Hoegh-Guldberg, O., Fine, M., Skirving, W., et al. 2005. Coral bleaching following wintry weather. Limnol. Oceanogr. 50, 265–271.CrossRefGoogle Scholar

Holmes, A. 1944. Principles of Physical Geology. London, Thomas Nelson.Google Scholar

Hopley, D. 1968. Morphology of Curocoa Island spit, North Queensland. Austral. J. Sci. 31, 122–123.Google Scholar

Hopley, D. 1970. The Geomorphology of the Burdekin Delta, North Queensland, Monograph Series, Occas. Paper 1. Townsville, Department of Geography, James Cook University.

Hopley, D. 1971. The origin and significance of North Queensland island spits. Z. Geomorphol. N.F. 15, 371–389.Google Scholar

Hopley, D. 1972. The storm surge associated with Cyclones Althea and Emily. In Trollope, D. H. (ed.) Cyclone Althea Part II: Storm Surges and Coastal Effects. Townsville, James Cook University, pp. 4.1–4.29.Google Scholar

Hopley, D. 1974a. The cyclone Althea storm surge. Austral. Geog. Stud. 12, 90–106.CrossRefGoogle Scholar

Hopley, D. 1974b. Australian weather example No. 2: storm surge. Austral. Geog. Stud. 12, 462–468.CrossRefGoogle Scholar

Hopley, D. 1975. Contrasting evidence for Holocene sea levels with special reference to the Bowen–Whitsunday area of Queensland. In Douglas, I., Hobbs, J. E., and Pigram, J. J. (eds.) Geographical Essays in Honour of Gilbert J. Butland. Armidale, Department of Geography, University of New England, pp. 51–84.Google Scholar

Hopley, D. 1977. The age of the outer ribbon reef surface, Great Barrier Reef, Australia: implications for hydroisostatic models. Proc. 3rd Int. Coral Reef Symp., Miami 2, 23–28.Google Scholar

Hopley, D. 1978a. Sea level change on the Great Barrier Reef: an introduction. Phil. Trans. Roy. Soc. Lond. A 291, 159–166.CrossRefGoogle Scholar

Hopley, D. 1978b. Geomorphology of the reefs and reef islands north of Lizard Island. Proc. Workshop on the Northern Sector of the Great Barrier Reef. Townsville, Great Barrier Reef Marine Park Authority, pp. 218–252.Google Scholar

Hopley, D. 1978c. Wheeler Reef: cay mobility. In Hopley, D. (ed.) Geographical Studies of the Townsville Area Monograph Series, Occas. Paper 2. Townsville, Geography Department, James Cook University, pp. 55–58.Google Scholar

Hopley, D. 1980. Mid-Holocene high sea levels along the coastal plain of the Great Barrier Reef Province: a discussion. Mar. Geol. 35, M1–M9.CrossRefGoogle Scholar

Hopley, D. 1981. Sediment movement around a coral cay, Great Barrier Reef, Australia. Pacif. Geol. 15, 17–36.Google Scholar

Hopley, D. 1982. The Geomorphology of the Great Barrier Reef: Quaternary Development of Coral Reefs. New York, John Wiley.Google Scholar

Hopley, D. 1983a. Evidence of 15 000 years of sea level change in tropical Queensland. In Hopley, D. (ed.) Australian Sea Levels in the Last 15 000 Years: A Review, Monograph Series, Occas. Paper 3. Townsville, Geography Department, James Cook University, pp. 93–104.Google Scholar

Hopley, D. 1983b. Deformation of the North Queensland continental shelf in the late Quaternary. In Smith, D. E. and Dawson, A. G. (eds.) Shorelines and Isostacy. London, Institute of British Geographers, pp. 347–366.Google Scholar

Hopley, D. 1983c. Morphological classification of shelf reefs: a critique with special reference to the Great Barrier Reef. In Barnes, D. J. (ed.) Perspectives on Coral Reefs. Canberra, Brian Clonston Publisher, pp. 180–199.Google Scholar

Hopley, D. 1984. The Holocene high energy window on the Central Great Barrier Reef. In Thom, B. G. (ed.) Coastal Geomorphology in Australia. Sydney, Academic Press, pp. 135–150.Google Scholar

Hopley, D. 1985. Geomorphological development of modern coastlines. In Pitty, A. F. (ed.) Themes in Geomorphology. Beckenham, Croom Helm, pp. 56–71.Google Scholar

Hopley, D. 1986a. Corals and reefs as indicators of paleo-sea levels, with special reference to the Great Barrier Reef. In Plassche, O. (ed.) Sea-Level Research: A Manual for the Collection and Evaluation of Data. Norwich, Geo Books, pp. 195–228.CrossRefGoogle Scholar

Hopley, D. 1986b. Beachrock as a sea-level indicator. In Plassche, O. (ed.) Sea-Level Research: A Manual for the Collection and Evaluation of Data. Norwich, Geo Books, pp. 157–173.CrossRefGoogle Scholar

Hopley, D. 1987. Holocene sea level changes in Australia and the southern Pacific. In Devoy, R. J. N. (ed.) Sea Surface Studies. London, Croom Helm, pp. 375–408.CrossRefGoogle Scholar

Hopley, D. 1988. Anthropogenic influences on Australia's Great Barrier Reef. Austral. Geog. 19, 26–45.CrossRefGoogle Scholar

Hopley, D. 1989a. Coral reefs: zonation, zonality and gradients. Essener Geog. Arbeit. 18, 79–123.Google Scholar

Hopley, D. 1989b. The Formation, Use and Management of the Great Barrier Reef. Melbourne, Longman Cheshire.Google Scholar

Hopley, D. 1993. Coral reef islands in a period of global sea-level rise. In Saxena, N. (ed.) Recent Advances in Marine Science and Technology, Proc. Pacific Congress on Marine Science and Technology, Honolulu, pp. 453–462.Google Scholar

Hopley, D. 1994. Continental shelf reef systems. In Carter, R. W. G. and Woodroffe, C. D. (eds.) Coastal Evolution: Late Quaternary Shoreline Dynamics. Cambridge, Cambridge University Press, pp. 303–340.Google Scholar

Hopley, D. 1997a. Coral reef islands: implications of more modest global change predictions. In Saxena, N. (ed.) Recent Advances in Marine Science and Technology, Proc. Pacific Congress on Marine Science and Technology, Honolulu, pp. 249–258.Google Scholar

Hopley, D. 1997b. Geology of reef islands of the Great Barrier Reef Australia. Devel. Sedimentol. 54, 835–866.CrossRefGoogle Scholar

Hopley, D. 2006. Coral reef growth on the shelf margin of the Great Barrier Reef with special reference to the Pompey Complex. J. Coast. Res. 22, 150–158.CrossRefGoogle Scholar

Hopley, D. and Barnes, R. 1985. Structure and development of a windward fringing reef, Orpheus Island, Palm Group, Great Barrier Reef. Proc. 5th Int. Coral Reef Congr., Tahiti 3, 141–146.Google Scholar

Hopley, D. and Catt, P. C. 1988. Use of near infra-red aerial photography for monitoring ecological changes to coral reef flats on the Great Barrier Reef. Proc. 6th Int. Coral Reef Symp., Townsville 3, 503–508.Google Scholar

Hopley, D. and Choat, H. C. 1990. The effects of mainland land use on adjacent reef systems of the Great Barrier Reef. In Agriculture and the Ecosystem in North Queensland. Townsville, Australian Institute of Agricultural Science, pp. 1–16.Google Scholar

Hopley, D. and Harvey, N. 1982. Radiocarbon ages and morphology of reef tops on the Great Barrier Reef between 14° 39′ S and 20° 45′ S: indicators of shelf neotectonics. Proc. 4th Int. Coral Reef Symp., Manila 1, 523–530.Google Scholar

Hopley, D. and Isdale, P. J. 1977. Coral micro atolls, tropical cyclones and reef flat morphology: a north Queensland example. Search 8, 79–81.Google Scholar

Hopley, D. and Murtha, G. G. 1975. The Quaternary Deposits of the Townsville Coastal Plain, Monograph Series 8. Townsville, Department of Geography, James Cook University.

Hopley, D. and Partain, B. 1987. The structure and development of fringing reefs off the Great Barrier Reef Province. In Baldwin, C. (ed.) Fringing Reef Workshop: Science, Industry and Management. Townsville, Great Barrier Reef Marine Park Authority, pp. 13–33.Google Scholar

Hopley, D. and Pichon, M. 1994. Coconut Island Proposed Reclamation, Unpubl. consultancy report. Cairns, Edmiston and Taylor.

Hopley, D. and Rasmussen, C. E. 1998. Coconut Island Sand Erosion Study, Unpubl. report. Cairns, Edmiston and Taylor.

Hopley, D. and Smithers, S. G. 2003. Queensland. In Bird, E. C. F. and Schwartz, M. (eds.) The World's Coasts. Available online at http://www.wkap.nl/subjects/TWCO

Hopley, D. and Thom, B. G. 1983. Australian sea levels in the last 15 000 years: a review. In Hopley, D. (ed.) Australian Sea Levels in the Last 15 000 Years: A Review, Monograph Series, Occas. Paper 3. Townsville, Department of Geography, James Cook University, pp. 3–26.

Hopley, D. and Woesik, R. 1988. Turbidity Levels in Nelly Bay, Magnetic Island Nth. Qld. with Reference to Magnetic Quay Proposal. Townsville, McIntyre and Associates.Google Scholar

Hopley, D., McLean, R. F., Marshall, J., and Smith, A. S. 1978. Holocene–Pleistocene boundary in a fringing reef: Hayman Island north Queensland. Search 9, 323–325.Google Scholar

Hopley, D., Davies, P. J., Harvey, N., and Isdale, P. J. 1982. The geomorphology of Redbill Reef, Central Great Barrier Reef. Proc. 4th Int. Coral Reef Symp., Manila 1, 541–548.Google Scholar

Hopley, D., Slocombe, A., Muir, F., and Grant, C. 1983. Nearshore fringing reefs in North Queensland: structure, growth and classification. Coral Reefs 1, 151–160.CrossRefGoogle Scholar

Hopley, D., Muir, F. J., and Grant, C. 1984. Pleistocene foundations and Holocene growth of Redbill Reef, South Central Great Barrier Reef. Search 15, 288–289.Google Scholar

Hopley, D., Parnell, K. E., and Isdale, P. J. 1989. The Great Barrier Reef Marine Park: dimensions and regional patterns. Austral. Geog. Stud. 27, 47–66.CrossRefGoogle Scholar

Hopley, D., Woesik, R., Hoyal, D. W. D., Rasmussen, C. E., and Steven, A. D. L. 1990. Sedimentation Resulting from Road Development Cape Tribulation Area, Technical Memoir 24. Townsville, Great Barrier Reef Marine Park Authority.Google Scholar

Hopley, D., Graham, T. L., and Rasmussen, C. E. 1997. Submerged shelf edge reefs, Great Barrier Reef, Australia. In Saxena, N. (ed.) Recent Advances in Marine Science and Technology, Proc. Pacific Congress on Marine Science and Technology, Honolulu, pp. 305–315.Google Scholar

Horton, B. P., Edwards, R. J., and Lloyd, J. M. 1999. A foraminiferal-based transfer function: implications for sea-level studies. J. Foramin Res. 29, 117–129.CrossRefGoogle Scholar

Horton, B. P., Larcombe, P., Woodroffe, S. A., et al. 2003. Contemporary foraminiferal distributions of a mangrove environment, Great Barrier Reef coastline, Australia: implications for sea-level reconstructions. Mar. Geol. 198, 225–243.CrossRefGoogle Scholar

Hubbard, D. K. 1997. Reefs as dynamic systems. In Birkeland, C. (ed.) Life and Death of Coral Reefs. New York, Chapman and Hall, pp. 43–67.CrossRefGoogle Scholar