Skip to main content Accessibility help
×
Hostname: page-component-78c5997874-v9fdk Total loading time: 0 Render date: 2024-11-09T14:31:55.051Z Has data issue: false hasContentIssue false

16 - Creating a perspective for comparing

Published online by Cambridge University Press:  18 December 2009

Albert Eschenmoser
Affiliation:
Laboratorium für Organische Chemie, ETH Hönggerberg
John D. Barrow
Affiliation:
University of Cambridge
Simon Conway Morris
Affiliation:
University of Cambridge
Stephen J. Freeland
Affiliation:
University of Maryland, Baltimore
Charles L. Harper, Jr
Affiliation:
John Templeton Foundation
Get access

Summary

Introduction

Any chemist looking at the molecular workings of a living cell from the vantage point of organic chemistry may have moments in which he desists from scientific business-as-usual and finds himself standing in awe before so much “molecular ingenuity” and sheer chemical beauty. If anyone, besides the biochemist, may be fit to recognize such marvels on the molecular level and put them into a proper perspective, it is the synthetic organic chemist, who tends to judge any new discovered molecular structure or process by the criterion of whether he could do such a thing himself: “If I had to, could I make this?” The question reflects a dichotomy, epistemological in nature, that has been with the science of organic chemistry from the very beginning: the two-fold task of studying molecules occurring in nature and creating by chemical synthesis molecules that have never existed before. Chemical synthesis has traditionally been the organic chemist's major tool for exploring the molecular world: the ability to synthesize molecules of ever-increasing complexity that mirror those produced by living nature has been a significant measure of progress in organic chemistry as a whole. Yet, the gap between what chemists are able to create by chemical synthesis and what nature achieves in biosynthesis remains immense.

Fortunately, it is inspiration rather than resignation that chemists are drawing from this gap, and they are encouraged to do so by considering how chemical thought and the chemist's ability to make molecules have changed in the course of the past two centuries.

Type
Chapter
Information
Fitness of the Cosmos for Life
Biochemistry and Fine-Tuning
, pp. 349 - 365
Publisher: Cambridge University Press
Print publication year: 2007

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Chaput, J. C. and Szostak, J. W. (2003). TNA synthesis by DNA polymerases. Journal of the American Chemical Society, 125, 9274–5.CrossRefGoogle ScholarPubMed
Crick, F. H. C. (1968). The origin of the genetic code. Journal of Molecular Biology, 38, 367–9.CrossRefGoogle ScholarPubMed
Eigen, M. (1971). Self-organization of matter and the evolution of biological macromolecules. Naturwissenschaften, 58, 465–523.CrossRefGoogle Scholar
Eschenmoser, A. (1999). Chemical etiology of nucleic acid structure. Science, 284, 2118–24.CrossRefGoogle ScholarPubMed
Eschenmoser, A. (2001). Design versus selection in chemistry and beyond. Pontificiae Academiae Scientiarum Scripta Varia, 99, 235–51.Google Scholar
Ferris, J. and Hagan, W. J. Jr. (1984). HCN and chemical evolution: the possible role of cyano compounds in prebiotic synthesis. Tetrahedron, 40, 1093 (review).CrossRefGoogle ScholarPubMed
Gesteland, R. F., Cech, T. R. and Atkins, J. F. (1999). The RNA World, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Press.Google Scholar
Gilbert, W. (1986). The RNA world. Nature, 319, 618.CrossRefGoogle Scholar
Groebke, K.et al. (1998). Why pentose- and not hexose-nucleic acids? V. Purine-purine pairing in homo-DNA: guanine, isoguanine, 2,6-diaminopurine, and xanthine. Helvetica Chimica Acta, 81, 375–474 (footnote 64 on p. 444).CrossRefGoogle Scholar
Guerrier-Takada, C.et al. (1983). The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 35, 849–57.CrossRefGoogle ScholarPubMed
Herdewijn, P. (1996). Targeting RNA with conformationally restricted oligonucleotides. Liebigs Annalen der Chemie, 1337–48.
Hyrup, B. and Nielsen, P. E. (1996). Peptide nucleic acids (PNA): synthesis, properties and potential applications. Bioorganic and Medicinal Chemistry Letters, 4, 5–23.
Joyce, G. F. and Orgel, L. E. (1999). Prospects for understanding the origin of the RNA world. In The RNA World, 2nd edn., ed. Gesteland, R. F., Cech, T. R. T. R. and Atkins, J. F.. Cold Spring Harbor, NY: Cold Spring Harbor Press, pp. 49–77.Google Scholar
Kempeneers, V.et al. (2003). Recognition of threosyl nucleotides by DNA and RNA polymerases. Nucleic Acids Research, 31, 6221–6.CrossRefGoogle ScholarPubMed
Kruger, K.et al. (1982). Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell, 31, 147–57.CrossRefGoogle ScholarPubMed
Lee, D. H.et al. (1996). A self-replicating peptide. Nature, 382, 525–8.CrossRefGoogle ScholarPubMed
Leumann, C. J. (2002). DNA analogues: from supramolecular principles to triological properties. Bioorganic and Medicinal Chemistry, 10, 841–54.
Miller, S. L. (1953). A production of amino acids under possible primitive earth conditions. Science, 117, 528–9.CrossRefGoogle ScholarPubMed
Miller, S. L. and Orgel, L. E. (1974). The Origins of Life on Earth. Englewood Cliffs, NJ: Prentice-Hall.Google Scholar
Morowitz, H. J., Heinz, B. and Deamer, D. W. (1988). The chemical logic of a minimum protocell. Origins of Life and Evolution of Biospheres, 18, 281–7.CrossRefGoogle ScholarPubMed
Morowitz, H. J., Kostelnik, J. D., Yang, G. D. et al. (2000). The origin of intermediary metabolism. Proceedings of the National Academy of Sciences, USA, 97, 7704–8.
Nielsen, P. E. (1993). Peptide nucleic acids (PNA): a model structure for the primordial genetic material. Origins of Life and Evolution of Biospheres, 23, 323–7.CrossRefGoogle ScholarPubMed
Orgel, L. E. (1968). Evolution of the genetic apparatus. Journal of Molecular Biology, 38, 381–93.CrossRefGoogle ScholarPubMed
Orgel, L. E. (1992). Molecular replication. Nature, 358, 203–9.CrossRefGoogle ScholarPubMed
Orgel, L. E. (2000). A simpler nucleic acid. Science, 290, 1306–7.CrossRefGoogle ScholarPubMed
Oro, J. and Kimball, A. P. (1960). Synthesis of adenine from ammonium cyanide. Biochemical and Biophysical Research Communications, 2, 407–12.CrossRefGoogle Scholar
Roberts, C. and Caserio, M. C. (1977). Basic Principles of Organic Chemistry, 2nd edn. Menlo Park, CA: W. A. Benjamin Inc., p. 77.Google Scholar
Schöning, K.-U., et al. (2000). Chemical etiology of nucleic acid structure: the α-threofuranosyl-(3′ → 2′) oligonucleotide system. Science, 290, 1347–51.CrossRefGoogle ScholarPubMed
Sulston, J., et al. (1968). Nonenzymatic synthesis of oligoadenylates on a polyuridylic acid template. Proceedings of the National Academy of Sciences, USA, 59, 726–33.CrossRefGoogle ScholarPubMed
Kiedrowski, G. (1986). A self-replicating hexadeoxynucleotide. Angewandte Chemie (International Edition), 25, 932. (In English.)CrossRefGoogle Scholar
Watson, J. D. (1968). The Double Helix, 1st edn. New York: Atheneum, p. 190.Google Scholar
Wächtershäuser, G. (1990). Evolution of the first metabolic cycle. Proceedings of the National Academy of Sciences, USA, 87, 200–4.CrossRefGoogle Scholar
Woese, C. (1967). The Genetic Code, the Molecular Basis for Genetic Expression. New York: Harper and Row.Google Scholar

Save book to Kindle

To save this book to your Kindle, first ensure [email protected] is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×