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1 - Genome and proteome analysis of industrial fungi

from I - Comparative and functional fungal genomics

Published online by Cambridge University Press:  05 October 2013

S. E. Baker
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
C. F. Wend
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
D. Martinez
Affiliation:
Genome Annotation and Analysis Joint Genome Institute Los Alamos National Laboratory Los Alamos NM 87545 USA
J. K. Magnuson
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
E. A. Panisko
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
Z. Dai
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
K. S. Bruno
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
K. K. Anderson
Affiliation:
Decision & Sensor Analytics Pacific Northwest National Laboratory 906 Battelle Blvd. Richland WA 99352 USA
M. E. Monroe
Affiliation:
Biological Separations and Mass Spectrometry Pacific Northwest National Laboratory 3335 Q Avenue Richland WA 99352 USA
D. S. Daly
Affiliation:
Statistical Sciences Pacific Northwest National Laboratory 3180 George Washington Way Richland WA 99352 USA
L. L. Lasure
Affiliation:
Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
G. D. Robson
Affiliation:
University of Manchester
Pieter van West
Affiliation:
University of Aberdeen
Geoffrey Gadd
Affiliation:
University of Dundee
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Summary

Background

In order to decrease dependence on petroleum, the United States Department of Energy (USDOE) Office of the Biomass Program (OBP) is investing in research and development to enable its vision of the biorefinery. The biorefinery will decrease the use of petroleum through conversion of biomass such as crops or agricultural waste into fuels and products.

In 2004, the USDOE OBP asked researchers at the Pacific Northwest National Laboratory (PNNL) and the National Renewable Energy Laboratory (NREL) to prepare a list of the top ten building-block chemicals that can be derived from simple sugars by biological and/or chemical means. The resulting list of twelve building-block chemicals and the accompanying report (www.eere.energy.gov/biomass/pdfs/35523.pdf) form an informational foundation on which future DOE and industry bioproducts research will be built (Table 1.1).

How do fungi fit into the biorefinery? Analysis of the ‘top ten’ study indicates that nine of the top twelve chemical building blocks are currently produced, or may potentially be produced, by fungal fermentation processes. However, a significant barrier to the use of bio-based products is the economic feasibility – fuels and products must be price-competitive with those derived from petroleum. An obvious way to decrease the costs of biobased products from fungi is to make fermentation strains more productive and processes more efficient. Traditional strain improvement programmes typically span a timescale measured in decades and process development done through the use of batch cultures is extremely labour intensive.

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Publisher: Cambridge University Press
Print publication year: 2007

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References

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  • Genome and proteome analysis of industrial fungi
    • By S. E. Baker, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, C. F. Wend, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, D. Martinez, Genome Annotation and Analysis Joint Genome Institute Los Alamos National Laboratory Los Alamos NM 87545 USA, J. K. Magnuson, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, E. A. Panisko, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, Z. Dai, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, K. S. Bruno, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, K. K. Anderson, Decision & Sensor Analytics Pacific Northwest National Laboratory 906 Battelle Blvd. Richland WA 99352 USA, M. E. Monroe, Biological Separations and Mass Spectrometry Pacific Northwest National Laboratory 3335 Q Avenue Richland WA 99352 USA, D. S. Daly, Statistical Sciences Pacific Northwest National Laboratory 3180 George Washington Way Richland WA 99352 USA, L. L. Lasure, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
  • Edited by G. D. Robson, University of Manchester, Pieter van West, University of Aberdeen, Geoffrey Gadd, University of Dundee
  • Book: Exploitation of Fungi
  • Online publication: 05 October 2013
  • Chapter DOI: https://doi.org/10.1017/CBO9780511902451.002
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  • Genome and proteome analysis of industrial fungi
    • By S. E. Baker, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, C. F. Wend, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, D. Martinez, Genome Annotation and Analysis Joint Genome Institute Los Alamos National Laboratory Los Alamos NM 87545 USA, J. K. Magnuson, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, E. A. Panisko, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, Z. Dai, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, K. S. Bruno, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, K. K. Anderson, Decision & Sensor Analytics Pacific Northwest National Laboratory 906 Battelle Blvd. Richland WA 99352 USA, M. E. Monroe, Biological Separations and Mass Spectrometry Pacific Northwest National Laboratory 3335 Q Avenue Richland WA 99352 USA, D. S. Daly, Statistical Sciences Pacific Northwest National Laboratory 3180 George Washington Way Richland WA 99352 USA, L. L. Lasure, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
  • Edited by G. D. Robson, University of Manchester, Pieter van West, University of Aberdeen, Geoffrey Gadd, University of Dundee
  • Book: Exploitation of Fungi
  • Online publication: 05 October 2013
  • Chapter DOI: https://doi.org/10.1017/CBO9780511902451.002
Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • Genome and proteome analysis of industrial fungi
    • By S. E. Baker, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, C. F. Wend, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, D. Martinez, Genome Annotation and Analysis Joint Genome Institute Los Alamos National Laboratory Los Alamos NM 87545 USA, J. K. Magnuson, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, E. A. Panisko, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, Z. Dai, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, K. S. Bruno, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA, K. K. Anderson, Decision & Sensor Analytics Pacific Northwest National Laboratory 906 Battelle Blvd. Richland WA 99352 USA, M. E. Monroe, Biological Separations and Mass Spectrometry Pacific Northwest National Laboratory 3335 Q Avenue Richland WA 99352 USA, D. S. Daly, Statistical Sciences Pacific Northwest National Laboratory 3180 George Washington Way Richland WA 99352 USA, L. L. Lasure, Fungal Biotechnology Team MSIN: K2–12 Chemical and Biological Processes Development Group Pacific Northwest National Laboratory 902 Battelle Blvd. Richland WA 99352 USA
  • Edited by G. D. Robson, University of Manchester, Pieter van West, University of Aberdeen, Geoffrey Gadd, University of Dundee
  • Book: Exploitation of Fungi
  • Online publication: 05 October 2013
  • Chapter DOI: https://doi.org/10.1017/CBO9780511902451.002
Available formats
×