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Published online by Cambridge University Press:  18 December 2009

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References

Atkinson, M. J. and Bilger, R. W. (1992). Effects of water velocity on phosphate uptake on coral reefs. Limnol. Oceanogr. 37, 261–272.CrossRefGoogle Scholar
Atkinson, M. J., Falter, J. L., and Hearn, C. J. (2001). Nutrient dynamics in the Biosphere 2 coral reef mesocosm: water velocity controls NH4 and PO4 uptake. Coral Reefs 20, 341–346.CrossRefGoogle Scholar
Baird, M. E., Roughan, M., Brander, R. W., Middleton, J. H., and Nippard, G. J. (2004). Mass-transfer-limited nitrate uptake on a coral reef flat, Warraber Island, Torres Strait, Australia. Coral Reefs 23, 386–396.CrossRefGoogle Scholar
Bloch, S. C. (2003). Excel for Engineers and Scientists, 2nd edn. New York: John Wiley.Google Scholar
Blumberg, A. F. and G. L. Mellor (1987). A description of a three-dimensional coastal ocean circulation model. In Three-Dimensional Coastal Ocean Models, ed. Heaps, N.. Washington, DC: American Geophysical Union, pp. 1–16.CrossRefGoogle Scholar
Brander, R. W., Kench, P. S., and Hart, D. (2004). Spatial and temporal variations in wave characteristics across a reef platform, Warraber Island, Torres Strait, Australia. Marine Geol. 207 (1–4), 169–184.CrossRefGoogle Scholar
Courant, R., Friedrichs, K. O., and Levy, H. (1928). Über die partiellen Differenzengleichungen der mathematischen Physik. Math. Annalen 100, 32–74.CrossRefGoogle Scholar
Csanady, G. T. (1982). Circulation in the Coastal Ocean (Environmental Fluid Mechanics). New York: Springer.CrossRefGoogle Scholar
Dauxois, T. and Peyrard, M. (2006). Physics of Solitons. Cambridge, UK: Cambridge University, Press.Google Scholar
Dean, R. G. and Dalrymple, R. A. (2001). Coastal Processes with Engineering Applications. Cambridge, UK: Cambridge University Press.CrossRefGoogle Scholar
DHI (2002). MIKE 21 Coastal Hydraulics and Oceanography, Hydrodynamic Module: Reference Manual. Hørsholm, Denmark: DHI Water and Environment.
Ebbesmeyer, C. C. and Ingraham, W. J. (1994). Shoe spilt in the North Pacific. Eos 73, 361–365.Google Scholar
Forester, C. S. (1953). Hornblower and the Atropos. London: Michael Joseph.Google Scholar
Fredsøe, J. and Diehards, R. (1992). Mechanics of Coastal Sediment Transport, Advanced Series in Ocean Engineering vol. 3. Singapore: World Scientific Publishing Co.CrossRefGoogle Scholar
Grant, W. D. and Madsen, O. W. (1979). Combined wave and current interation with a rough bottom. J. Geophys. Res. 84, 1797–1808.CrossRefGoogle Scholar
Hatcher, A. (1989). Variation in the components of a benthic community structure in a coastal lagoon as a function of spatial scale. Austr. J. Marine Freshw. Res. 40, 79–96.CrossRefGoogle Scholar
Hatcher, B. G. (1990). Coral reef primary productivity: a hierarchy of pattern and process. Trends Ecol. Evol. 5, 149–155.CrossRefGoogle ScholarPubMed
Hearn, C. J. (1983). Seasonal Aspects of the Oceanography of Koombana Bay, Environmental Dynamics Report ED–83–045. Perth, WA: The University of Western Australia.Google Scholar
Hearn, C. J. (1985). On the value of the mixing efficiency in the Simpson–Hunter h / u3 criterion. Deutsche Hydrogr. Z. 38(3), 133–145.CrossRefGoogle Scholar
Hearn, C. J. (1998). Application of the Stommel model to shallow mediterranean estuaries and their characterisation. J. Geophys. Res. 103, 10391–10404.CrossRefGoogle Scholar
Hearn, C. J. (1999). Wave-breaking hydrodynamics within coral reef systems and the effect of changing relative sealevel. J. Geophys. Res. 104, 30007–30020.CrossRefGoogle Scholar
Hearn, C. J. (2000). The SPECIES simulation software. In Proceedings of the United Nations Conference on Information Management and Decision Support for Marine Biodiversity Protection and Human Welfare: Coral Reefs, pp. 87–100. Townsville, QLD: Australian Institute of Marine Science.Google Scholar
Hearn, C. J. (2006). The great leap forward: particle age in coastal models. Eos Trans. 87(52), Fall Meeting Suppl. Abstract OS33F–01.Google Scholar
Hearn, C. J. and Largier, J. L. (1997). The summer buoyancy dynamics of a shallow mediterranean estuary and some effects of changing bathymetry: Tomales Bay, California. Estuar. Coast. Shelf Sci. 45, 497–506.CrossRefGoogle Scholar
Hearn, C. J. and Parker, I. N. (1988). Hydrodynamic processes on the Ningaloo Coral Reef, Western Australia. Proc. 6th Int. Coral Reef Symp. 2, 497–502.Google Scholar
Hearn, C. J. and Prince, G. (1983). A System of Computer Programs for the Acquisition and Analysis of Drogue Data, Environmental Dynamics Report ED-83-052. Perth, WA: The University of Western Australia.Google Scholar
Hearn, C. J. and Robson, B. J. (2001). Inter-annual variability of bottom hypoxia in a shallow mediterranean estuary. Estuar. Coast. Shelf Sci. 52, 643–657.CrossRefGoogle Scholar
Hearn, C. J. and E. Schulz (in press). Hydrodynamics of flow across a coral reef. Proc. Roy. Soc. Lond. A.
Hearn, C. J. and Sidhu, H. S. (1999). The Stommel model of shallow coastal basins. Proc. Roy. Soc. Lond. A 455, 3997–4011.CrossRefGoogle Scholar
Hearn, C. J. and Sidhu, H. S. (2003). Stommel transitions in shallow coastal basins. Continent. Shelf Res. 23, 1071–1085.CrossRefGoogle Scholar
Hearn, C. J., Hunter, J. R., Imberger, J., and Senden, D. (1985). Tidally induced jet in Koombana Bay, Western Australia. Austr. J. Marine Freshw. Res. 36(4), 453–479.CrossRefGoogle Scholar
Hearn, C. J., Atkinson, M. J., and Falter, J. L. (2001). A physical derivation of nutrient uptake rates in coral reefs: effects of roughness and waves. Coral Reefs 20(4), 347–356.CrossRefGoogle Scholar
Kantha, H. and Clayson, C. A. (2000). Numerical Models of Oceans and Oceanic Processes, International Geophysics Series vol. 66. New York: Academic Press.Google Scholar
Kato, H. and Phillips, O. M. (1969). On the penetration of a turbulent layer into a stratified fluid. J. Fluid Mech. 37, 643–655.CrossRefGoogle Scholar
Longuet-Higgins, M. S. and Stewart, R. W. (1964). Radiation stress in water waves: a physical discussion with applications. Deep Sea Res. 11, 529–562.Google Scholar
Luketina, D. A. and Imberger, J. (1987). Characteristics of a surface buoyant jet. J. Geophys. Res. 92, 5435–5447.CrossRefGoogle Scholar
Mangor, K. (2004). Shoreline Management Guidelines. Hørshølm, Denmark: DHI Water and Environment.Google Scholar
Mann, K. H. and Lazier, J. R. (2005). Dynamics of Marine Ecosystems: Biological–Physical Interactions in the Oceans. Oxford, UK: Blackwell.CrossRefGoogle Scholar
Mellor, G. L. and Yamada, T. (1982). Development of a turbulence closure model for geophysical fluid problems. Rev. Geophys. Space Phys. 20, 851–875.CrossRefGoogle Scholar
Minorsky, N. (1974). Introduction to Nonlinear Oscillations. Malabar, FL: Krieger.Google Scholar
Munk, W. H. and Anderson, E. R. (1948). Notes on a theory of the thermocline. J. Marine Res. 3, 276–295.Google Scholar
Officer, C. B. (1976). Physical Oceanography of Estuaries and Associated Coastal Waters. New York: John Wiley.Google Scholar
Paterson, J. C., Hamblin, P. F., and Imberger, J. (1984). Classification and dynamic simulation of the vertical structure of lakes. Limnol. Oceangr. 29, 845–861.CrossRefGoogle Scholar
Pope, S. B. (2000). Turbulent Flows. Cambridge, UK: Cambridge University Press.CrossRefGoogle Scholar
Rahmstorf, S. (1995). Bifurcations of the Atlantic thermohaline circulation in response to changes in the hydrological cycle. Nature 378, 145–149.CrossRefGoogle Scholar
Rahmstorf, S. and Ganopolski, A.. (1999). Simple theoretical model may explain apparent climate instability. J. Climate 12, 1349–1352.2.0.CO;2>CrossRefGoogle Scholar
Simpson, J. H. and Hunter, J. R. (1974). Fronts in the Irish Sea. Nature 250, 404–406.CrossRefGoogle Scholar
Simpson, J. H., Brown, J., Matthews, J., and Allen, G. (1990). Tidal strain, density currents and stirring in the control of estuarine stratification. Estuaries 13, 125–132.CrossRefGoogle Scholar
Smith, S. V., Kimmerer, W. J., Laws, E. A., Brock, R. E., and Walsh, T. W. (1981). Kaneohe Bay sewage diversion experiment: perspectives on ecosystem responses to nutritional perturbation. Pacif. Sci. 35, 279–395.Google Scholar
Smith, S. V., Hollibaugh, J. T., Dollar, S. J., and Vink, S. (1991a). Tomales Bay Metabolism: C–N–P stoichiometry and ecosystem heterotrophy at the land–sea interface. Estuar. Coast. Shelf Sci. 33, 223–257.CrossRefGoogle Scholar
Smith, S. V., Hollibaugh, J. T., Dollar, S. J., and Vink, S. (1991b). Tomales Bay, California: a case for carbon controlled nitrogen cycling. Limnol. Oceanogr. 34, 37–52.CrossRefGoogle Scholar
Stocker, T. F. and Wright, D. G. (1991). Rapid transitions of the ocean's deep circulation induced by changes in surface water fluxes. Nature 351, 729–732.CrossRefGoogle Scholar
Stommel, H. (1961). Thermohaline convection with two stable regimes of flow. Tellus 13 (2), 224–230.CrossRefGoogle Scholar
Stommel, H. (1963). Varieties of oceanographic experience: the ocean can be investigated as a hydrodynamical phenomenon as well as explored geographically. Science 15, 572–576.CrossRefGoogle Scholar
Tait, R. J. (1972). Wave set-up on coral reefs. J. Geophys. Res. 77, 2207–2211.CrossRefGoogle Scholar
Taylor, G. I. (1953). Dispersion of soluble matter in solvent flowing through a tube. Proc. Roy. Soc. Lond. A 219, 186–203.CrossRefGoogle Scholar
Thorpe, S. A. (2005). The Turbulent Ocean. Cambridge, UK: Cambridge University Press.CrossRefGoogle Scholar
Thurman, H. V. and Trujillo, A. P. (2003). Introductory Oceanography, 10th edn. New York: Prentice Hall.Google Scholar
Whitehead, J. A. (1995). Thermohaline ocean processes and models. Ann. Rev. Fluid Mech. 27, 89–113.CrossRefGoogle Scholar
Whitehead, J. A. (1998). Multiple T–S states for estuaries, shelves, and marginal seas. Estuaries 21, 281–293.CrossRefGoogle Scholar
Wolanski, E. and Spagnol, S. (2000). Sticky waters in the Great Barrier Reef. Estuar. Coast. Shelf Sci. 50, 27–32.CrossRefGoogle Scholar
Zeidberg, L. D. and Hamner, W. M. (2002). Distribution of squid paralarvae, Loligo opalescens (Cephalopoda: Myopsida), in the Southern California Bight in the three years following the 1997–1998 El Niño. Marine Biol. 141, 111–122.Google Scholar
Atkinson, M. J. and Bilger, R. W. (1992). Effects of water velocity on phosphate uptake on coral reefs. Limnol. Oceanogr. 37, 261–272.CrossRefGoogle Scholar
Atkinson, M. J., Falter, J. L., and Hearn, C. J. (2001). Nutrient dynamics in the Biosphere 2 coral reef mesocosm: water velocity controls NH4 and PO4 uptake. Coral Reefs 20, 341–346.CrossRefGoogle Scholar
Baird, M. E., Roughan, M., Brander, R. W., Middleton, J. H., and Nippard, G. J. (2004). Mass-transfer-limited nitrate uptake on a coral reef flat, Warraber Island, Torres Strait, Australia. Coral Reefs 23, 386–396.CrossRefGoogle Scholar
Bloch, S. C. (2003). Excel for Engineers and Scientists, 2nd edn. New York: John Wiley.Google Scholar
Blumberg, A. F. and G. L. Mellor (1987). A description of a three-dimensional coastal ocean circulation model. In Three-Dimensional Coastal Ocean Models, ed. Heaps, N.. Washington, DC: American Geophysical Union, pp. 1–16.CrossRefGoogle Scholar
Brander, R. W., Kench, P. S., and Hart, D. (2004). Spatial and temporal variations in wave characteristics across a reef platform, Warraber Island, Torres Strait, Australia. Marine Geol. 207 (1–4), 169–184.CrossRefGoogle Scholar
Courant, R., Friedrichs, K. O., and Levy, H. (1928). Über die partiellen Differenzengleichungen der mathematischen Physik. Math. Annalen 100, 32–74.CrossRefGoogle Scholar
Csanady, G. T. (1982). Circulation in the Coastal Ocean (Environmental Fluid Mechanics). New York: Springer.CrossRefGoogle Scholar
Dauxois, T. and Peyrard, M. (2006). Physics of Solitons. Cambridge, UK: Cambridge University, Press.Google Scholar
Dean, R. G. and Dalrymple, R. A. (2001). Coastal Processes with Engineering Applications. Cambridge, UK: Cambridge University Press.CrossRefGoogle Scholar
DHI (2002). MIKE 21 Coastal Hydraulics and Oceanography, Hydrodynamic Module: Reference Manual. Hørsholm, Denmark: DHI Water and Environment.
Ebbesmeyer, C. C. and Ingraham, W. J. (1994). Shoe spilt in the North Pacific. Eos 73, 361–365.Google Scholar
Forester, C. S. (1953). Hornblower and the Atropos. London: Michael Joseph.Google Scholar
Fredsøe, J. and Diehards, R. (1992). Mechanics of Coastal Sediment Transport, Advanced Series in Ocean Engineering vol. 3. Singapore: World Scientific Publishing Co.CrossRefGoogle Scholar
Grant, W. D. and Madsen, O. W. (1979). Combined wave and current interation with a rough bottom. J. Geophys. Res. 84, 1797–1808.CrossRefGoogle Scholar
Hatcher, A. (1989). Variation in the components of a benthic community structure in a coastal lagoon as a function of spatial scale. Austr. J. Marine Freshw. Res. 40, 79–96.CrossRefGoogle Scholar
Hatcher, B. G. (1990). Coral reef primary productivity: a hierarchy of pattern and process. Trends Ecol. Evol. 5, 149–155.CrossRefGoogle ScholarPubMed
Hearn, C. J. (1983). Seasonal Aspects of the Oceanography of Koombana Bay, Environmental Dynamics Report ED–83–045. Perth, WA: The University of Western Australia.Google Scholar
Hearn, C. J. (1985). On the value of the mixing efficiency in the Simpson–Hunter h / u3 criterion. Deutsche Hydrogr. Z. 38(3), 133–145.CrossRefGoogle Scholar
Hearn, C. J. (1998). Application of the Stommel model to shallow mediterranean estuaries and their characterisation. J. Geophys. Res. 103, 10391–10404.CrossRefGoogle Scholar
Hearn, C. J. (1999). Wave-breaking hydrodynamics within coral reef systems and the effect of changing relative sealevel. J. Geophys. Res. 104, 30007–30020.CrossRefGoogle Scholar
Hearn, C. J. (2000). The SPECIES simulation software. In Proceedings of the United Nations Conference on Information Management and Decision Support for Marine Biodiversity Protection and Human Welfare: Coral Reefs, pp. 87–100. Townsville, QLD: Australian Institute of Marine Science.Google Scholar
Hearn, C. J. (2006). The great leap forward: particle age in coastal models. Eos Trans. 87(52), Fall Meeting Suppl. Abstract OS33F–01.Google Scholar
Hearn, C. J. and Largier, J. L. (1997). The summer buoyancy dynamics of a shallow mediterranean estuary and some effects of changing bathymetry: Tomales Bay, California. Estuar. Coast. Shelf Sci. 45, 497–506.CrossRefGoogle Scholar
Hearn, C. J. and Parker, I. N. (1988). Hydrodynamic processes on the Ningaloo Coral Reef, Western Australia. Proc. 6th Int. Coral Reef Symp. 2, 497–502.Google Scholar
Hearn, C. J. and Prince, G. (1983). A System of Computer Programs for the Acquisition and Analysis of Drogue Data, Environmental Dynamics Report ED-83-052. Perth, WA: The University of Western Australia.Google Scholar
Hearn, C. J. and Robson, B. J. (2001). Inter-annual variability of bottom hypoxia in a shallow mediterranean estuary. Estuar. Coast. Shelf Sci. 52, 643–657.CrossRefGoogle Scholar
Hearn, C. J. and E. Schulz (in press). Hydrodynamics of flow across a coral reef. Proc. Roy. Soc. Lond. A.
Hearn, C. J. and Sidhu, H. S. (1999). The Stommel model of shallow coastal basins. Proc. Roy. Soc. Lond. A 455, 3997–4011.CrossRefGoogle Scholar
Hearn, C. J. and Sidhu, H. S. (2003). Stommel transitions in shallow coastal basins. Continent. Shelf Res. 23, 1071–1085.CrossRefGoogle Scholar
Hearn, C. J., Hunter, J. R., Imberger, J., and Senden, D. (1985). Tidally induced jet in Koombana Bay, Western Australia. Austr. J. Marine Freshw. Res. 36(4), 453–479.CrossRefGoogle Scholar
Hearn, C. J., Atkinson, M. J., and Falter, J. L. (2001). A physical derivation of nutrient uptake rates in coral reefs: effects of roughness and waves. Coral Reefs 20(4), 347–356.CrossRefGoogle Scholar
Kantha, H. and Clayson, C. A. (2000). Numerical Models of Oceans and Oceanic Processes, International Geophysics Series vol. 66. New York: Academic Press.Google Scholar
Kato, H. and Phillips, O. M. (1969). On the penetration of a turbulent layer into a stratified fluid. J. Fluid Mech. 37, 643–655.CrossRefGoogle Scholar
Longuet-Higgins, M. S. and Stewart, R. W. (1964). Radiation stress in water waves: a physical discussion with applications. Deep Sea Res. 11, 529–562.Google Scholar
Luketina, D. A. and Imberger, J. (1987). Characteristics of a surface buoyant jet. J. Geophys. Res. 92, 5435–5447.CrossRefGoogle Scholar
Mangor, K. (2004). Shoreline Management Guidelines. Hørshølm, Denmark: DHI Water and Environment.Google Scholar
Mann, K. H. and Lazier, J. R. (2005). Dynamics of Marine Ecosystems: Biological–Physical Interactions in the Oceans. Oxford, UK: Blackwell.CrossRefGoogle Scholar
Mellor, G. L. and Yamada, T. (1982). Development of a turbulence closure model for geophysical fluid problems. Rev. Geophys. Space Phys. 20, 851–875.CrossRefGoogle Scholar
Minorsky, N. (1974). Introduction to Nonlinear Oscillations. Malabar, FL: Krieger.Google Scholar
Munk, W. H. and Anderson, E. R. (1948). Notes on a theory of the thermocline. J. Marine Res. 3, 276–295.Google Scholar
Officer, C. B. (1976). Physical Oceanography of Estuaries and Associated Coastal Waters. New York: John Wiley.Google Scholar
Paterson, J. C., Hamblin, P. F., and Imberger, J. (1984). Classification and dynamic simulation of the vertical structure of lakes. Limnol. Oceangr. 29, 845–861.CrossRefGoogle Scholar
Pope, S. B. (2000). Turbulent Flows. Cambridge, UK: Cambridge University Press.CrossRefGoogle Scholar
Rahmstorf, S. (1995). Bifurcations of the Atlantic thermohaline circulation in response to changes in the hydrological cycle. Nature 378, 145–149.CrossRefGoogle Scholar
Rahmstorf, S. and Ganopolski, A.. (1999). Simple theoretical model may explain apparent climate instability. J. Climate 12, 1349–1352.2.0.CO;2>CrossRefGoogle Scholar
Simpson, J. H. and Hunter, J. R. (1974). Fronts in the Irish Sea. Nature 250, 404–406.CrossRefGoogle Scholar
Simpson, J. H., Brown, J., Matthews, J., and Allen, G. (1990). Tidal strain, density currents and stirring in the control of estuarine stratification. Estuaries 13, 125–132.CrossRefGoogle Scholar
Smith, S. V., Kimmerer, W. J., Laws, E. A., Brock, R. E., and Walsh, T. W. (1981). Kaneohe Bay sewage diversion experiment: perspectives on ecosystem responses to nutritional perturbation. Pacif. Sci. 35, 279–395.Google Scholar
Smith, S. V., Hollibaugh, J. T., Dollar, S. J., and Vink, S. (1991a). Tomales Bay Metabolism: C–N–P stoichiometry and ecosystem heterotrophy at the land–sea interface. Estuar. Coast. Shelf Sci. 33, 223–257.CrossRefGoogle Scholar
Smith, S. V., Hollibaugh, J. T., Dollar, S. J., and Vink, S. (1991b). Tomales Bay, California: a case for carbon controlled nitrogen cycling. Limnol. Oceanogr. 34, 37–52.CrossRefGoogle Scholar
Stocker, T. F. and Wright, D. G. (1991). Rapid transitions of the ocean's deep circulation induced by changes in surface water fluxes. Nature 351, 729–732.CrossRefGoogle Scholar
Stommel, H. (1961). Thermohaline convection with two stable regimes of flow. Tellus 13 (2), 224–230.CrossRefGoogle Scholar
Stommel, H. (1963). Varieties of oceanographic experience: the ocean can be investigated as a hydrodynamical phenomenon as well as explored geographically. Science 15, 572–576.CrossRefGoogle Scholar
Tait, R. J. (1972). Wave set-up on coral reefs. J. Geophys. Res. 77, 2207–2211.CrossRefGoogle Scholar
Taylor, G. I. (1953). Dispersion of soluble matter in solvent flowing through a tube. Proc. Roy. Soc. Lond. A 219, 186–203.CrossRefGoogle Scholar
Thorpe, S. A. (2005). The Turbulent Ocean. Cambridge, UK: Cambridge University Press.CrossRefGoogle Scholar
Thurman, H. V. and Trujillo, A. P. (2003). Introductory Oceanography, 10th edn. New York: Prentice Hall.Google Scholar
Whitehead, J. A. (1995). Thermohaline ocean processes and models. Ann. Rev. Fluid Mech. 27, 89–113.CrossRefGoogle Scholar
Whitehead, J. A. (1998). Multiple T–S states for estuaries, shelves, and marginal seas. Estuaries 21, 281–293.CrossRefGoogle Scholar
Wolanski, E. and Spagnol, S. (2000). Sticky waters in the Great Barrier Reef. Estuar. Coast. Shelf Sci. 50, 27–32.CrossRefGoogle Scholar
Zeidberg, L. D. and Hamner, W. M. (2002). Distribution of squid paralarvae, Loligo opalescens (Cephalopoda: Myopsida), in the Southern California Bight in the three years following the 1997–1998 El Niño. Marine Biol. 141, 111–122.Google Scholar

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  • References
  • Clifford J. Hearn
  • Book: The Dynamics of Coastal Models
  • Online publication: 18 December 2009
  • Chapter DOI: https://doi.org/10.1017/CBO9780511619588.015
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  • References
  • Clifford J. Hearn
  • Book: The Dynamics of Coastal Models
  • Online publication: 18 December 2009
  • Chapter DOI: https://doi.org/10.1017/CBO9780511619588.015
Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • References
  • Clifford J. Hearn
  • Book: The Dynamics of Coastal Models
  • Online publication: 18 December 2009
  • Chapter DOI: https://doi.org/10.1017/CBO9780511619588.015
Available formats
×