Detailed analysis of the polarization tracking modules for Ku band active phased array antennas is presented. The proposed transmitter (14.0–14.5 GHz) and receiver (12.25–12.75 GHz) modules are based on the low temperature co-fired ceramic (LTCC) technique, containing orthogonal dual channels with different phases controlled by phase shifters. The effect of amplitude and phase inconsistency between two channels on polarization tracking performance is analyzed. The validity of the analysis is verified by the measurements of the manufactured prototypes. The measured patterns of the active phased array antenna are given to illustrate the effects of the modules on polarization agility, which may be used for Ku band satellite antennas on mobile terminals.