Uridylate residues (Us) are inserted and deleted at
precise positions in mitochondrial transcripts of Trypanosoma
brucei. These sequence changes are determined by interactions
with small guide RNAs (gRNAs) that are complementary to
edited sequence. Adenylate (A) and guanylate (G) residues
in gRNAs across from editing sites pair with inserted Us.
We evaluate whether sequence bias exists in the bases surrounding
insertion sites. Upon analyzing all reported insertion
sites in T. brucei, we find that the predicted
base pairs flanking insertion sites show a strong bias.
Specifically, guiding As and Gs tend to be flanked by cytosine
residues and Us. This bias is expected if precise base-pair
interactions at the editing site determine the number of
inserted Us.