Seed dormancy in plants can have a significant impact on their ecology. Recent work by Rojas-Villa and Quijano-Abril (2023) classified the seed dormancy class in 14 plant species from the Andean forests of Colombia by using germination trials and several microscopy techniques to describe seed anatomy and morphology. The authors conclude that Cecropia species have both physical and physiological dormancy (of which they call physiophysical dormancy) based on seed morphology and mean germination times of over 30 days. Here, we present seed permeability and germination data from neotropical pioneer tree species: Ochroma pyramidale, Cecropia longipes, and Cecropia insignis, as well as Cecropia peltata (present in Rojas-Villa and Quijano-Abril, 2023), to demonstrate that Cecropia species do not exhibit dormancy and also have high levels of seed permeability. We find that the mean germination time for all three Cecropia species in our study was less than 30 days. This suggests a need for reporting the conditions in which germination trials take place to allow for comparability among studies and using seed permeability tests to accurately identify the physical dormancy class of seeds. Further, we present data from the literature that suggests that dormancy is not a requirement for seed persistence in the seed bank.

Seed dormancy is an important trait associated with pre-sprouting and malting quality in barley. Genome-wide association studies (GWASs) have been used to detect quantitative trait loci (QTLs) underlying complex traits in major crops. In the present study, we collected 295 barley (Hordeum vulgare L.) accessions from Australia, Europe, Canada and China. A total of 25,179 single nucleotide polymorphism (SNP)/diversity arrays technology sequence markers were used for population structure, linkage disequilibrium and GWAS analysis. Candidate genes within QTL regions were investigated, and their expression levels were analysed using RNAseq data. Five QTLs for seed dormancy were identified. One QTL was mapped on chromosome 1H, and one QTL was mapped on chromosome 4H, while three QTLs were located on chromosome 5H. This is the first report of a QTL on the short arm of chromosome 5H in barley. Molecular markers linked to the QTL can be used for marker-assisted selection in barley breeding programmes.

Time-separated seed collections with a separation period of 12–18 years were used to study recent changes in germination traits and the role of climate factors in seven tropical dry forest (TDF) woody species in Zambia, southern Africa. In all the species, peak and final germination were lower in recent (2016–2021) seed collections than in historic (1998–2005) seed collections during the first germination season. However, in species with seed dormancy, both peak and final germination after one year burial were higher in recent seed collections than in historic seed collections. Three monthly climate factors had significant effects on final germination in the different species and the timing of most of these factors was during seed development and ripening that suggest that these factors operated through mother plants. In species with seed dormancy, post-first-year germination of buried seeds responded to climate factors in the regeneration niche. Climate factors that significantly affected germination included those that changed over the separation period between historic and recent seed collections. This indicates that short-time climatic changes may have the potential to impact germination in TDF woody species of southern Africa. The germination responses to climate factors were both positive and negative and it is not clear whether these are adaptations or not. Further research is required to assess the adaptive significance of these changes in germination traits in TDF species of southern Africa.

Understanding the timing of weed emergence is crucial to effective management. Management practices implemented too early may fail to completely control late-emerging seedlings, whereas management practices implemented too late will suffer from low efficacy. Weed emergence times reflect biological factors, such as seed dormancy and germination requirements, as well as environmental conditions. We conducted a systematic review of studies that developed models to predict weed emergence temporal patterns. We screened 1,854 studies, 98 of which were included in the final dataset. Most of the studies included were conducted in North America (51%) or Europe (30%). A wide variety of weed species (102) and families (21) were included, and many studies modeled several weeds. Grass weeds (Poaceae) were modeled most frequently (83 instances). Most weeds (40%) had base temperature ${T_{\rm{b}}}$ values between 0 and 5 C, and 38% had base water potential ${{\rm{\psi }}_{\rm{b}}}$ ranging from −1.0 to −0.5 MPa. Most studies used empirical parametric models, such as Weibull (40%) or Gompertz (30%) models. Nonparametric and mechanistic models were also represented. Models varied in their biological and environmental data requirements. In general, empirical parametric models based on hydrothermal time (i.e., time above base temperature and water potential thresholds) represented a good balance between ease of use and prediction accuracy. Soft computing approaches such as artificial neural networks demonstrated substantial potential in situations with complex emergence patterns and limited data availability, although they (soft computing approaches) can be susceptible to overfitting. Our study also demonstrated variability in model performance and limited generalizability across species and regions. This finding underscores the need for context-specific and well-validated weed emergence models to inform management, especially in the context of climate change.

Seed dormancy is a key trait used around the world to help understand the ecological dynamics of plant species, however, in some ecosystems such as the Andean forests of Colombia, the identification of dormancy class remains poorly known. To address this, we described the morphology, anatomy and dormancy class of the seeds and fruits of 14 species using microtome sections, light microscopy and scanning electron microscopy. Five native pioneer species showed Morphophysiological Dormancy, three Physical Dormancy + Physiological Dormancy and two Physical Dormancy, whereas two invasive species showed Physiological Dormancy. Only the species of the genus Cecropia had seeds with PY + PD that was promoted by the anatomical structure of the achenes. Of the analysed species, 85% showed dormancy and followed a pattern like other tropical montane ecosystems in the world. The anatomy of achenes and development of seed dormancy play important roles in the capacity of Cecropia species to contribute to the natural regeneration of Andean ecosystems. Additionally, seed dormancy may promote the high invasiveness of Thunbergia alata and Ulex europaeus in the Andean forests of the Central Cordillera of Colombia.

The obligate root parasite Cistanche armena is a recently rediscovered, extremely rare endangered species endemic to Armenia, specifically parasitizing camelthorn (Alhagi maurorum, Fabaceae) and saltwort (Salsola dendroides, Chenopodiaceae). Its populations are reputedly declining due to habitat destruction and biotic impacts. Since the only known means of its reproduction is via the seeds, understanding the mechanisms of breaking C. armena seed dormancy and germination along with the related aspects of the species’ biology is highly important both from fundamental (functional ecology and evolution) and applied (conservation and management) perspectives. Here, we present the first in vitro seed germination protocol for C. armena involving fluridone, a systemic herbicide targeting the carotenoid biosynthetic pathway. In addition, the seed micromorphology of C. armena is described using both light microscopy and lignin autofluorescence visualized by confocal laser scanning microscopy. The actin cytoskeleton in radicle cells of germinated C. armena seedlings is described for the first time, being the proof of seed viability. Further elaboration and application of the proposed germination protocol with the cultivation of C. armena on susceptible hosts are altogether seen as a valuable tool for the conservation of this species.

Information in the literature and unpublished results of the authors on Dobinea were used to determine the kind [class(es)] of seed (true seed + endocarp) dormancy and of non-dormancy of genera in all five tribes of Anacardiaceae, and the results were examined in relation to the taxonomic position and endocarp anatomy within the family. Reports of both seed germination and endocarp anatomy were found for 15 genera in tribe Spondiadeae, 6 in tribe Anacardieae, 30 in tribe Rhoeae, 3 in tribe Semecarpeae and 1 in tribe Dobineeae. In Spondiadeae (Spondias-type endocarp), Anacardieae, Semecarpeae and Dobineeae (Anacardium-type endocarp), seeds are either non-dormant (ND) or have physiological dormancy (PD). In Rhoeae (Anacardium-type Rhoeae Groups A, B, C and D endocarps), on the other hand, seeds are ND or have physical dormancy (PY), PD or PY + PD. PY/PY + PD in this tribe seems to be restricted (or nearly so) to Rhus s.s. and closely related genera (e.g. Cotinus, Malosma and Toxicodendron) with an Anacardium-type Rhoeae Group A endocarp. However, seeds of other genera (e.g. Astronium and Schinus) with this type of endocarp and those with Rhoeae Group B (e.g. Pistacia), Group C (e.g. Pentaspadon) and Group D (e.g. Heeria) endocarps are either ND or have PD. The fossil fruit record strongly suggests that present-day relationships between diaspore dormancy (or non-dormancy), endocarp structure and taxonomic position within Anacardiaceae extend back to at least the Palaeogene.

Southern threecornerjack (Emex australis Steinh.) produces both aerial seeds on the branches and subterranean seeds at the base of the plant crown approximately 1 to 2 cm underground. Prior research indicated that seeds buried at a depth of 1 cm have a much higher probability of germinating in the following season compared with seeds on the soil surface. The current research investigated the number of subterranean seeds produced per plant, timing of subterranean seed production, and germination requirements of subterranean seeds compared with aerial seeds. This research demonstrated that E. australis plants from multiple populations produced subterranean seeds beginning at the 4-leaf development stage, before the production of aerial seeds. Individual plants produced a maximum of 30 subterranean seeds. Germination of subterranean and aerial seeds following afterripening over the summer to autumn (December to May) fallow was similar, demonstrating that the different seed types had no differences in dormancy. Further, the subterranean seeds did not have the light requirement for germination observed in aerial seeds. Subterranean seeds had 22.2% and 24.3% germination in light and dark conditions, respectively, compared with aerial seeds, which had 26.9% germination in light conditions and 12.3% germination in the dark. Production of subterranean seeds was low, given that a mature E. australis plant may produce more than 1,100 aerial seeds, but the subterranean seeds formed earlier in plant development. Recommendations for postemergence herbicides are to spray E. australis at the 2- to 4-leaf stage of growth, yet some plants may have already produced mature subterranean seeds by this stage. Further research is required to determine the impact of subterranean seeds on population ecology.

Plant community-level studies on seed dormancy traits are important to understand and determine the significance of seed dormancy in different ecosystems. Hence, we studied seed dormancy and other related seed biological traits of 42 selected tropical lowland rainforest tree species from Sri Lanka, aiming to address seed dormancy class(es) for a biodiverse tropical lowland wet zone forest community and the relationship between dormancy classes, forest strata and seed dispersal mechanisms. Seed germination, imbibition, embryo length:seed length ratio, embryo morphology and the effect of gibberrelic acid on seed germination were determined. Sixty-two percent of the species with T50 < 30 days were identified as having fast-germinating seeds and the remaining 38% with T50 > 30 possessed slow-germinating seeds. Seeds of 33 species had fully developed embryos, while nine species had underdeveloped embryos; three had morphological dormancy (MD) and six morphophysiological dormancy (MPD). Treatment with gibberellic acid revealed physiological dormancy (PD) in seeds of six species, and the response to manual scarification confirmed physical dormancy (PY) in seeds of Pericopsis moonina. The majority of tropical lowland rainforests had non-dormant (ND) species (62%), and 14.3, 14.3, 7 and 2.3% of the species had MPD, PD, MD, and PY, respectively. Non-dormancy decreased for taxa from the upper strata to the lower strata of the forest. ND seeds were dispersed during the rainy season. Thus, non-dormancy seems to be the most dominant germination behaviour among the tree species in the lowland rainforest of Sri Lanka with the class of dormancy related to forest strata and dispersal time.

Smoke-derived seed germination is an important trait for plants to colonize postfire habitats. The well-characterized smoke-derived chemicals of karrikins germinate seeds of species not known to occur after fires in nature. Hence, the ecologically relevant germination cues in smoke remain to be explored for native postfire plants. With the fire-chaser, Nicotiana attenuata, we revisit a bioassay-driven fractionation of liquid smoke to identify ecologically relevant germination cues. By combining bioassay-guided fractionation and comparative unbiased metabolomics, we developed a robust and efficient method to identify germination cues in smoke. Syringaldehyde (SAL) was re-identified as a germination cue in fractions of liquid smoke that promote seed germination. SAL was found to be produced during wildfires in the plant's native habitat, efficiently adsorbed to N. attenuata seeds from aqueous solutions and not readily leached from soil and accurately predicted the boundaries of natural fire events that reflect the occurrence of native postfire N. attenuata populations. We propose that SAL is an ecologically relevant germination cue in smoke for this species.

Cadellia pentastylis (Surianaceae) is an Australian endemic threatened rainforest tree. Irregular flowering and fruiting events coupled with high rates of infertility and insect predation has meant that seed testing has not been possible for this species. Seeds were opportunistically collected from a wild population in early 2021, which allowed for the first germination tests to be conducted. In this study, the presence of physical dormancy was examined by performing an imbibition test using scarified and non-scarified seeds. We also investigated whether a 5-min heat shock treatment at temperatures ranging from 60 to 120°C improved germination success. The presence of physiological dormancy was also examined by recording germination success following a gibberellic acid or smoke-water pre-treatment. Both scarified and non-scarified seeds readily imbibed water over a 72-h period, and several seeds had germinated in both treatments after 48 h. Final germination proportion and t50 following a heat shock, gibberellic acid or smoke-water pre-treatment did not significantly differ from the controls. We conclude that C. pentastylis seeds are non-dormant. Although a palisade cell layer has been reported in the endocarp, our results suggest that this layer may not be sufficiently formed to restrict germination. We recommend that seeds are collected from populations following dispersal and propagated shortly after or stored as conservation collections in ex situ Seedbanks.

Wild oat is a herbicide resistance-prone global weed species that causes significant economic losses in dryland and horticultural agriculture. As a result, there has been a significant research effort to control this species. A major impediment to this research is the seed coat-mediated dormancy of wild oat, which requires a labor-intensive incision or puncturing of the seed coat to initiate seed germination. This study defines the most efficient settings of a mechanical thresher to overcome wild oat seed dormancy and then validates these settings using multiple populations collected from the Western Australian grain belt. We also compare the effects of rapid mechanical scarification and known germination stimulus tactics such as scarification with sulfuric acid (H2SO4), partial endosperm removal, sandpaper scarification of the seed coat, and immersion in sodium nitroprusside (NO donor SNP) solution on wild oat seedling growth rate. Threshing treatment of 1,500 rpm for 5 s provides equivalent germination compared with manually puncturing individual wild oat seeds, with no difference in seedling relative growth rate. The mechanical scarification of seeds using the thresher resulted in greater germination (66%) than H2SO4 scarification (0%), partial endosperm removal (10%), sandpaper seed coat scarification (25%), and exposure to NO donor SNP (34%). This study demonstrates that the physical dormancy of wild oat can be rapidly overcome using a commercially available mechanical thresher.

Temperature may regulate seed dormancy and germination and determine the geographical distribution of species. The present study investigated the thermal limits for seed germination of Polygonum ferrugineum (Polygonaceae), an aquatic emergent herb distributed throughout tropical and subtropical America. Seed germination responses to light and temperature were evaluated both before (control) and after stratification at 10, 15 and 20°C for 7, 14 and 28 d. Germination of control seeds was ~50% at 10 and 15°C, and they did not germinate from 20 to 30°C. The best stratification treatment was 7 d at 10°C, where seed germination was >76% in the dark for all temperatures, except at 30°C, and < 60% in light conditions. A thermal time approach was applied to the seed germination results. Base temperature (Tb) was 6.3°C for non-dormant seeds and optimal temperature (To) was 20.6°C, ceiling temperature (Tc (<50)) was 32.8°C, and thermal time requirement for 50% germination was 44.4°Cd. We concluded that a fraction of P. ferrugineum seeds is dormant, has a narrow thermal niche to germinate (10 and 15°C) and that cold stratification (10°C) alleviated dormancy and amplified the thermal range permissive for germination of the species. Consequently, P. ferrugineum is expected to occur in colder environments, for example, at high altitudes. Higher temperatures decrease the probabilities of alleviate dormancy and the ability of their seeds to germinate.

Pre-harvest sprouting (PHS) induced by the absence of seed dormancy causes a severe reduction in crop yield and flour quality. In this study, we isolated and characterized TaABI4, an ABA-responsive transcription factor that participates in regulating seed germination in wheat. Sequence analysis revealed that TaABI4 has three homologues, located on chromosomes 1A/1B/1D. TaABI4 contains a conserved AP2 domain, and AP2-associated, LRP and potential PEST motifs. Putative cis-acting regulatory elements (CE1-like box, W-box, ABRE elements and RY elements) were identified in the TaABI4 promoter region that showed high conservation in 17 wheat cultivars and wheat-related species. Expression profiling of TaABI4 indicated that it is a seed-specific gene accumulating during the middle stages of seed development. Transcript accumulation of TaABI4 in wheat cultivar Chuanmai 32 (CM32, PHS susceptible) was 5.07-fold and 1.39-fold higher than that in synthetic hexaploidy wheat SHW-L1 (PHS resistant) at 15 and 20 DPA, respectively. Six expression quantitative trait loci (eQTL) of TaABI4 on chromosomes 2A, 2D, 3B and 4A were characterized based on the accumulated transcripts of TaABI4 in SHW-L1 and CM32-derived recombinant inbred lines. These QTLs explained 10.7 to 46.1% of the trait variation with 4.53–10.59 of LOD scores, which contain genes that may affect the expression of TaABI4.

The introduced meadow knapweed (Centaurea × moncktonii C.E. Britton), a hybrid of black (Centaurea nigra L.) and brown (Centaurea jacea L.) knapweeds, is increasingly common in pastures, meadows, and waste areas across many U.S. states, including New York. We evaluated the effects of temperature, light, seed stratification, scarification, and population on percent germination in four experiments over 2 yr. Percent germination ranged from 3% to 100% across treatment combinations. Higher temperatures (30:20, 25:15, and sometimes 20:10 C day:night regimes compared with 15:5 C) promoted germination, especially when combined with the stimulatory effect of light (14:10 h L:D compared with continuous darkness). Under the three lowest temperature treatments, light increased percent germination by 15% to 86%. Cold-wet seed stratification also increased germination rates, especially at lower germination temperatures, but was not a prerequisite for germination. Scarification did not increase percent germination. Differences between C. × moncktonii populations were generally less significant than differences between temperature, light, and stratification treatments. Taken together, these results indicate that C. × moncktonii is capable of germinating under a broad range of environments, which may have facilitated this species’ range expansion in recent decades. However, C. × moncktonii also shows evidence of germination polymorphism: some seeds will germinate under suboptimal conditions, while others may remain dormant until the abiotic environment improves. Subtle differences in dormancy mechanisms and their relative frequencies may affect phenological traits like the timing of seedling emergence and ultimately shape the sizes and ranges of C. × moncktonii populations.

Mudflats are exposed for short periods after flood water drawdown. They support fast-growing annual herbs with a ruderal strategy. To optimize their recruitment success, seeds of mudflat species germinate better under fluctuating temperatures, full illumination and aerobic environments that indicate the presence of optimal (non-flooded) conditions for plant growth and development. Here, we hypothesize that prior exposure of mudflat seeds to hypoxic (flooded) environment interferes with the germination process and results in more vigorous germination once aerobic conditions are regained. To test this hypothesis, seeds of five mudflat species were incubated in both aerobic and hypoxic environments at four (14/6, 22/14, 22/22 and 30/22°C) temperature regimes, reflecting different (seasonal) conditions when drawdowns may occur. All species responded positively to four temperature regimes; however, moderate 22/14 and 22/22°C temperatures were optimum for high percentages and rates (speed) of seed germination. Since seeds of four species germinated exclusively under aerobic conditions, they were moved from hypoxic to aerobic conditions. Prior exposure of seeds to hypoxic environment facilitated high percentages, rates and synchronization of germination of Limosella aquatica, Peplis portula and Samolus valerandi seeds compared to incubation under strict aerobic conditions. However, prior exposure to hypoxic environment induced secondary dormancy in non-dormant seeds of Hypericum humifusum but broke dormancy in Lythrum hyssopifolia seeds that otherwise required cold stratification to overcome physiological dormancy. All species that have a narrow ecological niche (strictly occurring in mudflat habitats) showed positive responses to prior exposure to hypoxic environments. In contrast, H. humifusum that has a wide ecological niche (from mudflats to moist sandy grasslands) showed a negative response. We conclude that the hypoxic environment may strongly affect seed germination behaviour once the aerobic environment is regained. The most striking effect is the acceleration of the germination process and, therefore, life cycle supporting the survival in an ephemeral habitat.

In wetlands, dormancy may be a key functional trait enabling seeds to avoid underwater germination, which could be lethal for seedling establishment. Our objectives were to find out (i) if shallow dormant (i.e. conditionally dormant) Echinochloa crus-galli seeds from an anaerobic germination resistant accession can break dormancy under hypoxic submergence and (ii) if underwater germination can be restored in scarified, non-dormant seeds. Shallow dormant E. crus-galli seeds perceived diurnally alternating temperatures (AT) and red light (R) pulses (i.e. dormancy-breaking cues) under hypoxic submergence; however, an inhibitory far-red light pulse given at the end of the 4-d inundation period demonstrated that most of the seeds (85%) were unable to break dormancy. Scarified E. crus-galli seeds, which did not express dormancy under drained conditions, were unable to germinate under hypoxic submergence, despite being exposed to dormancy-breaking cues (AT + R). Lastly, the temporal window for germination sensitivity to the inhibitory action of hypoxia, once dormancy-breaking signals have been applied, is progressively lost and bounded to approximately 18 h for half of the seed lot. These results highlight the importance of dormancy as a trait enabling E. crus-galli seeds to avoid underwater germination, a risky scenario for seedling emergence and establishment in this facultative hydrophyte.

Wild radish (Raphanus raphanistrum L.) is a problematic and economically damaging dicotyledonous weed infesting crops in many regions of the world. Resistance to the auxinic herbicides 2,4-D and dicamba is widespread in Western Australian R. raphanistrum populations, with the resistance mechanism appearing to involve alterations in the physiological response to synthetic auxins and in plant defense. This study aimed to determine whether these alterations cause inhibition in plant growth or reproduction that could potentially be exploited to manage 2,4-D–resistant populations in cropping areas. Therefore, the morphology and seed production of resistant and susceptible populations were compared in an outdoor pot study, with plants grown in the presence and absence of competition by wheat (Triticum aestivum L.). The susceptible and resistant R. raphanistrum populations were equally suppressed by wheat competition, with plant growth and seed production being decreased by approximately 50%. Although resistant populations produced less vegetative biomass than susceptible populations, there was no negative association between resistance and seed production. Therefore, it is unlikely that any nonherbicidal management practices will be more efficacious on 2,4-D–resistant than 2,4-D–susceptible R. raphanistrum populations.

Germination ecology was investigated in a natural population of Xyris longiscapa, a perennial herbaceous species endemic to the Brazilian campo rupestre. Seeds were collected over four consecutive years (2014 to 2017) to evaluate germination responses to a range of temperatures (from 15 to 30°C). The light requirement was evaluated in seeds collected in 2014. Seeds collected in 2014 were also buried in soil in the natural habitat of the species to evaluate changes in germinability at different temperatures over the time. Seeds showed an absolute light requirement for germination. Seed germination was affected by temperature, collection year and the interaction between these two factors. Seeds collected in 2014 showed a narrower temperature range for germination (15–20°C), compared with the seeds collected in 2015, 2016 and 2017 that germinated in a temperature range of 15–25°C. Buried seeds remained viable in soil for at least 14 months and exhibited seasonal dormancy cycling. Secondary dormancy was induced during the rainy season and alleviated during the dry season, following a conditional dormancy/dormancy cycle. The degree of primary dormancy appeared to be influenced by the environmental conditions experienced by seeds during maturation. Primary dormancy (when present), seed persistence in soil and seasonal dormancy cycles are strategies of X. longiscapa to enhance regeneration success in the harsh environment of the Brazilian campo rupestre.

We studied the variability of germination, dormancy and viability loss of Hirschfeldia incana seeds in relation to seed size. Seeds were stored at 35°C under humid [75% relative humidity (RH)] or dry (33% RH) conditions. Seed germination and electrolyte leakage were evaluated periodically. Small seeds had lower longevity at humid or dry storage conditions (5 or 407 days, respectively) than large or intermediate seeds (7–9 or 536–727 days, respectively). Moreover, H. incana shows variability in seed dormancy related to seed size within a population, with small seeds having lower dormancy (13%) than intermediate (50%) or large seeds (72%). Dormancy was partially released after a short storage at 35°C and humid conditions. Under dry storage conditions, endogenous dormancy cycles were observed for over a year, and longer times of storage had a dormancy-breaking effect through dry after-ripening. Results suggest a dual strategy producing non-dormant seeds with low longevity that will germinate immediately after dispersal, and seeds with greater longevity that will delay germination. Membrane permeability increased linearly with ageing at both humid and dry storage (R2 = 0.60). Small seeds showed greater conductivity than intermediate or large seeds (0.7, 0.4 or 0.3 mS g–1 dry weight, respectively, at the 80% germination). The conductivity test could be used to evaluate the quality of H. incana seeds and would allow us to identify dormant (non-germinating) seed lots as viable. However, the influence of storage conditions and variability within a seed population on seed longevity should be taken into account when evaluating seed quality.