Ctenophores are one of the least known invertebrate phyla in Mexico, especially the benthic forms in which studies are incomplete and infrequent, lacking information about their ecology and diversity. As part of the environmental monitoring project ‘Biodiversidad Marina de Yucatán’ conducted in the southern Gulf of Mexico and Mexican Caribbean Sea, the benthic ctenophore Vallicula multiformis (Coeloplanidae) was identified in association with green algae in the southern Gulf of Mexico, and on an autonomous reef monitoring structure in the Mexican Caribbean Sea. This finding represents the first record of the occurrence of a benthic ctenophore species in Mexican waters. We provide morphological characteristics of V. multiformis in both reef areas. Recording this species increases the known number of Mexican ctenophore fauna from 33 to 34 taxa and represents baseline information for the continuous study of the ecology and diversity of benthic ctenophores in Mexico.