GABA (gamma-amino-butyric acid) is the predominant neurotransmitter in the mammalian suprachiasmatic
nucleus (SCN), with a central role in circadian time-keeping. We therefore undertook an ultrastructural
analysis of the GABA-containing innervation in the SCN of mice and rats using immunoperoxidase and
immunogold procedures. GABA-immunoreactive (GABA-ir) neurons were identified by use of anti-GABA
and anti-GAD (glutamic acid decarboxylase) antisera. The relationship between GABA-ir elements and the
most prominent peptidergic neurons in the SCN, containing vasopressin-neurophysin (VP-NP) or vasoactive
intestinal polypeptide (VIP), was also studied. Within any given field in the SCN, approximately 40–70% of
the neuronal profiles were GABA-ir. In GABA-ir somata, immunogold particles were prominent over
mitochondria, sparse over cytoplasm, and scattered as aggregates over nucleoplasm. In axonal boutons, gold
particles were concentrated over electron-lucent synaptic vesicles (diameter 40–60 nm) and mitochondria,
and in some instances over dense-cored vesicles (DCVs, diameter 90–110 nm). GABA-ir boutons formed
either symmetric or asymmetric synaptic contacts with somata, dendritic shafts and spines, and occasionally
with other terminals (axo-axonic). Homologous or autaptic connections (GABA on GABA, or GAD on
GAD) were common. Although GABA appeared to predominate in most neuronal profiles, colocalisation of
GABA within neurons that were predominantly neuropeptide-containing was also evident. About 66% of
the VIP-containing boutons and 32% of the vasopressinergic boutons contained GABA. The dense and
complex GABAergic network that pervades the SCN is therefore comprised of multiple neuronal phenotypes
containing GABA, including a wide variety of axonal boutons that impinge on heterologous and
homologous postsynaptic sites.