Population analyses of functional connectivity have provided a rich understanding of how brain function differs across time, individual, and cognitive task. An important but challenging task in such population analyses is the identification of reliable features that describe the function of the brain, while accounting for individual heterogeneity. Our work is motivated by two particularly important challenges in this area: first, how can one analyze functional connectivity data over populations of individuals, and second, how can one use these analyses to infer group similarities and differences. Motivated by these challenges, we model population connectivity data as a multilayer network and develop the multi-node2vec algorithm, an efficient and scalable embedding method that automatically learns continuous node feature representations from multilayer networks. We use multi-node2vec to analyze resting state fMRI scans over a group of 74 healthy individuals and 60 patients with schizophrenia. We demonstrate how multilayer network embeddings can be used to visualize, cluster, and classify functional regions of the brain for these individuals. We furthermore compare the multilayer network embeddings of the two groups. We identify significant differences between the groups in the default mode network and salience network—findings that are supported by the triple network model theory of cognitive organization. Our findings reveal that multi-node2vec is a powerful and reliable method for analyzing multilayer networks. Data and publicly available code are available at https://github.com/jdwilson4/multi-node2vec.

Over the past decade, advances in the interdisciplinary field of network science have provided a framework for understanding the intrinsic structure and function of human brain networks. A particularly fruitful area of this work has focused on patterns of functional connectivity derived from noninvasive neuroimaging techniques such as functional magnetic resonance imaging. An important subset of these efforts has bridged the computational approaches of network science with the rich empirical data and biological hypotheses of neuroscience, and this research has begun to identify features of brain networks that explain individual differences in social, emotional, and cognitive functioning. The most common approach estimates connections assuming a single configuration of edges that is stable across the experimental session. In the literature, this is referred to as a static network approach, and researchers measure static brain networks while a subject is either at rest or performing a cognitively demanding task. Research on social and emotional functioning has primarily focused on linking static brain networks with individual differences, but recent advances have extended this work to examine temporal fluctuations in dynamic brain networks. Mounting evidence suggests that both the strength and flexibility of time-evolving brain networks influence individual differences in executive function, attention, working memory, and learning. In this review, we first examine the current evidence for brain networks involved in cognitive functioning. Then we review some preliminary evidence linking static network properties to individual differences in social and emotional functioning. We then discuss the applicability of emerging dynamic network methods for examining individual differences in social and emotional functioning. We close with an outline of important frontiers at the intersection between network science and neuroscience that will enhance our understanding of the neurobiological underpinnings of social behavior.