Sulfidated nanoscale zerovalent iron (S-nZVI) materials show enhanced reactivity and selectivity towards chlorinated solvents compared to non-sulfidated nZVI, thus they have a high potential for subsurface chlorinated solvent remediation. However, little is known about the possible toxic effects of S-nZVI towards microbial communities, which is of particular concern with regard to combined abiotic–biotic chlorinated solvent treatment scenarios. In this study, the toxicity of two different S-nZVI materials towards Shewanella oneidensis MR-1 (S. MR-1) was examined under anaerobic and aerobic conditions using colony forming units (CFU) and adenosine triphosphate (ATP) measurements, and the results were then compared to identical exposures performed with non-sulfidated nZVI. In a second step, the toxicity of S-nZVI and nZVI materials was tested on the commercial bioremediation culture KB-1® and on an in-house trichloroethylene enrichment culture. Under aerobic conditions, S. MR-1 viability was less affected by S-nZVI materials compared to non-sulfidated nZVI materials (up to three times higher viability) and it was generally lower compared to anaerobic conditions where little difference in S. MR-1 viability was observed between the tested materials. In terms of the two dechlorinating cultures, they exhibited significantly higher ATP viability during anaerobic exposures to S-nZVI and nZVI materials. Particularly for KB-1®, which retained comparable ATP-viability after ~60 hours exposure as S. MR-1 after two hours. Moreover, the ATP viability of the mixed cultures was generally higher in S-nZVI exposures compared to nZVI exposures (up to three times higher viability). The observed viability patterns are explained by differences in the shell structure, chemistry and stability of the tested S-nZVI and nZVI materials towards corrosion, while the substantially enhanced resilience of KB-1® is argued to stem from its year-long cultivation in the presence of reduced FeS particulates.