The dihydrolipoamide succinyltransferase (E2o) component of
the α-ketoglutarate dehydrogenase complex catalyzes the
transfer of a succinyl group from the S-succinyldihydrolipoyl
moiety to coenzyme A. E2o is normally a 24-mer, but is
found as a trimer when E2o is expressed with a C-terminal
[His]6 tag. The crystal structure
of the trimeric form of the catalytic domain (CD) of the
Escherichia coli E2o has been solved to 3.0 Å
resolution using the Molecular Replacement method. The
refined model contains an intact trimer in the asymmetric
unit and has an R-factor of 0.257 (Rfree
= 0.286) for 18,699 reflections between 10.0 and 3.0 Å
resolution. The core of tE2oCD (residues 187–396)
superimposes onto that of the cubic E2oCD with an RMS difference
of 0.4 Å for all main-chain atoms. The C-terminal
end of tE2oCD (residues 397–404) rotates by an average
of 37° compared to cubic E2oCD, disrupting the normal
twofold interface. Despite the alteration of quaternary
structure, the active site of tE2oCD shows no significant
differences from that of the cubic E2oCD, although several
side chains in the active site are more ordered in the
trimeric form of E2oCD. Analysis of the available sequence
data suggests that the majority of E2 components have active
sites that resemble that of E. coli E2oCD. The
remaining E2 components can be divided into three groups
based on active-site sequence similarity. Analysis of the
surface properties of both crystal forms of E. coli
E2oCD suggests key residues that may be involved in the
protein–protein contacts that occur between the catalytic
and lipoyl domains of E2o.