Many organisms living in the ocean create tests, shells, or related physical structures of calcium carbonate (CaCO3). As this is most often from dissolved inorganic carbon, using organisms that create calcium carbonate structures for climate research and dating purposes requires knowledge of the origin of carbon that is incorporated. Here, we give a short overview of research on marine carbonates over the last 60 years, especially that based on shell and coral samples. Both shells and corals exhibit annual growth patterns, like trees, and therefore offer possibilities for yearly resolution of past radiocarbon (14C) variations. We concentrate on their evolution in 14C dating including difficulties in determining reservoir ages as well as the possibilities they offer for archaeological dating, oceanography, calibration purposes as well as environmental research in general.

Responses of corals to seawater acidification have been extensively studied. Sensitivity varies widely between species, highlighting the need to avoid extrapolation from one to another to get an accurate understanding of coral community responses. We tested the responses of seven coral species (Acropora cytherea, Acropora hyacinthus, Acropora pulchra, Leptastrea pruinosa, Montipora grisea, Pavona cactus, Pocillopora verrucosa) from the Mo'orea lagoon to a 48-day exposure to three pH scenarios (pH 7.95, 7.7 and 7.3). Tissue necrosis, mortality, growth rates, photophysiological performances and colour index were recorded. Few significant differences were noted between pH 7.95 and 7.7, but species-specific responses were observed at pH 7.3. While our data do not allow identification of the mechanisms behind this diversity in response between species inhabiting the same environment, it can exclude several hypotheses such as local adaptation, skeletal type, corallum morphology or calcification rate as sole factors determining coral sensitivity to pH.

Coral skeletal structures can provide a robust record of nuclear bomb produced 14C with valuable insight into air-sea exchange processes and water movement with applications to fisheries science. To expand these records in the South Pacific, a coral core from Tutuila Island, American Samoa was dated with density band counting covering a 59-yr period (1953–2012). Seasonal signals in elemental ratios (Sr/Ca and Ba/Ca) and stable carbon (δ13C) values across the coral core corroborated the well-defined annual band structure and highlighted an ocean climate shift from the 1997–1998 El Niño. The American Samoa coral 14C measurements were consistent with other regional records but included some notable differences across the South Pacific Gyre (SPG) at Fiji, Rarotonga, and Easter Island that can be attributed to decadal ocean climate cycles, surface residence times and proximity to the South Equatorial Current. An analysis of the post-peak 14C decline associated with each coral record indicated 14C levels are beginning to merge for the SPG. This observation, coupled with otolith measurements from American Samoa, reinforces the perspective that bomb 14C dating can be performed on fishes and other marine organisms of the region using the post-peak 14C decline to properly inform fisheries management in the South Pacific.

Marine reservoir age is an important component for correction in radiocarbon (14C) dating of marine and coastal samples. 14C concentration in pre-bomb marine samples of known age are used to derive marine reservoir age of a region. Annually banded coral from Landfall island in the northern Andaman has been analyzed for its 14C concentration during the pre-bomb period 1948–1951. 14C age and reservoir effect (∆R) are reported for these pre-bomb coral samples from the northern Andaman region. The mean 14C age of 331 ± 61 yr BP was obtained for the period 1948–1951 with an average reservoir age correction of –138 ± 61 yr. This reservoir age correction is lowest reported from the northern Indian Ocean. ∆R value of the northern Andaman and the Bay of Bengal appears lower than that of southern Andaman. The ∆R values obtained using mollusk shells and coral from the Andaman region shows large variability. The lower reservoir age correction for the Landfall Island situated in the northern part of the Andaman archipelago, could result due to freshwater flux and reduced upwelling in the region.

The trajectory of the Kuroshio, the western boundary current in the north Pacific, influences regional climate. It intrudes into the South China Sea (SCS) through the Luzon Strait, resulting in the exchange of water, nutrients, heat, and salt between the Pacific and SCS. It has been reported that the trajectory of the Kuroshio has varied with decadal climate changes. However, there has been no report of an observation-based estimate of the variation in the Luzon Strait transport. Here, a 50-year, high-resolution coral skeletal radiocarbon (Δ14C) dataset from 1946 to 1994 is reported from Currimao, northwest of Luzon Island. Δ14C has been used as a sensitive tracer of seawater, and our data indicates a significant increase in Δ14C from 1946 to 1994 related to atmospheric nuclear bomb testing, with more rapid increase in the SCS than in the Pacific. The unusual, rapid Δ14C increase in the 1950s found in our SCS corals together with seasonal variation in Δ14C will helps constrain physical oceanographic models for the western Pacific, including the SCS.

The South China Sea (SCS) is a biodiversity hotspot, however, most biodiversity surveys in the region are confined to shallow water reefs. Here, we studied the benthic habitat and fish assemblages in the upper mesophotic coral ecosystems (MCEs; 30–40 m) and SWRs (8–22 m) at three geographic locations (Luzon Strait; Palawan; and the Kalayaan Group of Islands) in the eastern SCS (also called the West Philippine Sea) using diver-based survey methods. Mean coral genera and fish species richness ranged from 17–25 (per 25 m2) and 11–17 (per 250 m2) in MCEs, respectively; although none of these were novel genera/species. Coral and fish assemblages were structured more strongly by location than by depth. Location differences were associated with the variability in benthic composition, wherein locations with higher hard coral cover had higher coral genera richness and abundance. Locations with higher algae and sand cover had higher diversity and density of fish herbivores and benthic invertivores. Fishing efforts may also have contributed to among-location differences as the highly exploited location had the lowest fish biomass. The low variation between depths may be attributed to the similar benthic composition at each location, the interconnectivity between depths due to hydrological conditions, fish motility, and the common fishing gears used in the Philippines that can likely extend beyond SWRs. Results imply that local-scale factors and anthropogenic disturbances probably dampen across-depth structuring in coral genera and fish species assemblages.

Sea surface reservoir ages (R) are reported from radiocarbon (14C) measurements of the annual growth bands of coral Siderastrea siderea collected on the Atlantic coast off Martinique Island, in the Lesser Antilles volcanic arc. Mean values of R are similar between 1835 and 1845 during pre-anthropogenic times at 385±30 yr and between 1895 and 1905 at 382±20 yr when there was a huge eruption from the Montagne Pelée volcano in 1902–1903. Limited 14C aging of sea surface (~40 yr) may be due to enhanced volcanic activity. Variability of R is slightly greater during 1835–1845 than during 1895–1905. It is linked to a moderate increase of ∆14C of 5‰, strengthened by a clear increase of δ18O of 0.4‰. This is attributed to a decrease of the northward advection of the South Atlantic Waters into the western tropical North Atlantic and Caribbean Sea and relative enhanced westward flux of the tropical North Atlantic surface waters, the southern waters having lower values of 14C and δ18O than the North Atlantic ones. From 1835 to 1845, the fraction of the South Atlantic Waters transported up to Martinique Island was reduced from 25% to 15%.

Coral communities of the Persian Gulf (PG) withstand maximum and annual ranges of water temperatures that surpass those found on the majority of reefs elsewhere. As such, these communities may inform on how coral reefs might adapt to the warmer waters of the future. Depending on the algal symbiont (genus Symbiodinium) harboured, advantages in stress tolerance may be conferred to the coral holobiont. Characterizing the algal component is therefore critical in determining the coral holobiont's tolerance phenotype. Coral associations off the Arabian coastline of the PG have been characterized as biogeographically unique, containing a rare group of taxonomically ancestral and thermotolerant algal symbionts, the Symbiodinium thermophilum group. In contrast, waters off the Iranian coast remain poorly characterized with a notable lack of S. thermophilum group symbionts identified in coral associations to date. Here, we characterize the algal component of two reef building corals (Porites harrisoni and Cyphastrea microphthalma) predominant at three sites spanning almost the entire length of the PG's Iranian coast. Genotyping using the chloroplastic 23S and nuclear ITS2 genes, we demonstrate the presence of S. thermophilum group symbionts. We discuss the probable physical drivers of these associations and highlight the need for further research in these relatively understudied waters.

Holocene paleosea-level data for Fiji, represented by 77 dates and emergence magnitudes, are presented, screened, and adjusted. Most data are from coral microatolls, potentially the most precise paleosea-level indicators in this region. Holocene sea-level changes are reconstructed for five areas within Fiji known to have had different late Quaternary tectonic histories. Resulting analysis suggests that postglacial sea level in Fiji reached its present level more than 6900 14C yr B.P. It also suggests either that a single maximum 5650–3200 14C yr B.P. (perhaps +2.19 m but more likely +1.35–1.50 m) occurred or that two maxima occurred 6100–4550 14C yr B.P. (+0.75–1.85 m) and 3590–2800 14C yr B.P. (+0.90–2.46 m). Broad agreement exists between these empirical sea-level reconstructions and those derived theoretically using the ICE-4G model (predicted maximum ∼4000 14C yr B.P.; ∼+2.1 m). This suggests that both methods of reconstructing Holocene sea-level changes are valid, as are the assumptions underpinning the ICE-4G model. The most important of these, that eustatic sea level had effectively stopped rising by late middle-Holocene time (5000–4000 yr B.P.), is confirmed by observations from Fiji.

Little is known about colonization of remote island coasts by marine invertebrates, other than corals. The structure of hard substrata assemblages was investigated across Ascension Island's littoral zone in comparison with other sites. Arrays of acrylic panels were deployed at two sites for 2 years at Ascension Island to measure subtidal recruitment. Colonization of panels at Ascension I. was low, though space occupation, abundance and richness varied considerably. After ~1 and 2 years Ascension panels were <17 and <37% covered by fauna and each had <22 recruits and 54 recruits (per 100 cm2) respectively, amongst the lowest density of recruits reported. Recruitment rates of corals (25 m2 year−1) at Ascension I. were also similar to the lowest levels reported elsewhere (e.g. at Bermuda or Midway islands). Less dispersive animal types, e.g. cheilostome bryozoans, were poorly represented. Panels immersed in Tanzania and Scotland were >30% covered, with >76 recruits per 100 cm2 and with bryozoans well represented after 1 year. Across-littoral surveys of established macrofauna at five remote islands (Ascension I., Easter I., Azores, South Georgia and Signy I., Antarctica) revealed similar trends of a rich sublittoral and lower littoral reducing drastically up-shore; molluscs dominating abundance and species numbers, whilst polychaetes, crustaceans and echinoderms were well represented. Established sessile animals occurred patchily at a mean density of 8.26 m−2 but recruits had mortality levels >99%. Polar or remote temperate/tropical sites are typically less colonized than at non-remote, low latitudes but the lowest levels reported are at remote polar sites. Reduced colonization at Ascension island reflects remoteness.

Specimens of the deep-sea scale worm Neopolynoe acanellae (Verrill, 1881) (Polychaeta, Polynoidae) were collected at depths between 466 and 1405 m in Canadian waters while still attached to their host, the pennatulacean coral (sea pen) Pennatula grandis Ehrenberg, 1834. The present records extend the northern latitude of occurrence of N. acanellae in North America by 17o (~2000 km) to include the northern continental shelf of Newfoundland and Labrador and the lower Arctic, off the southern coast of Baffin Island (Canada). Analysis of the worm's intestinal content confirmed the presence of sea pen soft tissues and sclerites, suggesting that this species feeds on its host and is therefore parasitic.

Global warming (GW) and ocean acidification (OA) have been recognized as severe threats for reef-building corals that support coral reef ecosystems, but these effects on the early life history stage of corals are relatively unknown compared with the effects on calcification of adult corals. In this study, we evaluated the effects of thermal stress and CO2-driven acidified seawater on fertilization in a reef-building coral, Acropora digitifera. The fertilization rates of A. digitifera decreased in response to thermal stress compared with those under normal seawater conditions. In contrast, the changes of fertilization rates were not evident in the acidified seawater. Generalized Linear Mixed Model (GLMM) predicted that sperm/egg crosses and temperature were explanatory variables in the best-fitted model for the fertilization data. In the best model, interactions between thermal stress and acidified seawater on the fertilization rates were not selected. Our results suggested that coral fertilization is more sensitive to future GW than OA. Taking into consideration the previous finding that sperm motility of A. digitifera was decreased by acidified seawater, the decrease in coral cover followed by that of sperm concentration might cause the interacting effects of GW and OA on coral fertilization.

Stratford Shoal is a topographic high dividing the west and central basins of Long Island Sound (north-west Atlantic). The southern end of the shoal has a linear, north–south-tending boulder reef along the crest. Repeated observations of the reef using remote and diver-held cameras from 1991 to 2010 found an apparently stable epibenthic community dominated by Haliclona oculata (branching sponge), Astrangia poculata (northern star coral), Mytilus edulis (blue mussel) and erect bryozoa. In 2012, when the boulder reef area was imaged as part of a benthic habitat mapping project, A. poculata was still abundant, but no H. oculata was found. A number of mechanisms (e.g. species interactions, disease, recruitment failure, thermal stress, sediment loading, freshwater input and physical disturbance) may have contributed, individually or synergistically, to the community shift. However, because of the ad hoc and aperiodic nature of the observations, drivers of the shift are indeterminate. As a result, whether the observed changes reflect a short-term disturbance or a long-term community state remains unclear, as do the effects of changes in the identity of the dominant species.

We describe the successful creation of new reef habitat on Pulau Weh, Indonesia. Coral cover on artificial reef modules increased from a mean of 24±SE 2.4% 1 year after the initial attachment of Acropora spp. coral fragments to 64±SE 4.8% after 3 years. The artificial reef modules were also rapidly colonized by coral recruits. Recruit densities were 53±SE 3.2 m−2 on modules that had been submerged for only 1 year, nearly twice as high as recruit densities on natural reef substratum (31±2.8 m−2). Consequently, the original Acropora assemblage had increased to include at least 23 coral taxa, including 10 additional Acropora species. The artificial reefs also supported at least 29 reef fish species, from 11 families. Unfortunately, this initial success in habitat creation was abruptly halted by a rapid rise in sea temperature in May 2010 that killed almost all corals on the artificial reefs and on nearby natural reefs. Notwithstanding the general view that reef rehabilitation is yet to deliver ecological and conservation benefits at meaningful scales, other benefits of this project included raising the awareness of reef conservation in the local community, promotion of tourism on Pulau Weh and job creation. We conclude, therefore, that habitat creation has a legitimate role as part of an integrated marine conservation strategy.

Many reef coral diseases have been described affecting corals in the wild, several of which have been associated with causal agents based on experimental inoculation and testing of Koch's postulates. In the aquarium industry, many coral diseases and pathologies are known from the grey literature but as yet these have not been systematically described and the relationship to known diseases in the wild is difficult to determine. There is therefore scope to aid the maintenance and husbandry of corals in aquaria by informing the field of the scientifically described wild diseases, if these can be reliably related. Conversely, since the main driver to identifying coral diseases in aquaria is to select an effective treatment, the lessons learnt by aquarists on which treatments work with particular syndromes provides invaluable evidence for determining the causal agents. Such treatments are not commonly sought by scientists working in the natural environment due the cost and potential environmental impacts of the treatments. Here we review both wild and aquarium diseases and attempt to relate the two. Many important aquarium diseases could not be reconciled to those in the wild. In one case, however, namely that of the ciliate Helicostoma sp. as a causal agent of brown jelly syndrome in aquarium corals, there may be similarities with pathogenic agents of the wild coral diseases, such as white syndrome and brown band syndrome. We propose that Helicostoma is actually a misnomer, but improved understanding of this pathogen and others could benefit both fields. Improved practices in aquarium maintenance and husbandry would also benefit natural environments by reducing the scale of wild harvest and improving the potential for coral culture, both for the aquarium industry and for rehabilitation programmes.

In order to determine optimal feeding regimes for captive corals, prey capture by the scleractinian coral Galaxea fascicularis was determined by measuring clearance of prey items from the surrounding water. Colonies of G. fascicularis (sized between 200 and 400 polyps) were incubated in 1300 ml incubation chambers. Nauplii of the brine shrimp Artemia sp. were used as the prey item. A series of incubation experiments was conducted to determine the maximal capture per feeding event and per day. To determine maximal capture per feeding event, total uptake of nauplii after one hour was determined for different prey item availabilities ranging from 50 to 4000 nauplii per polyp. To determine maximal capture per day, the corals were subjected to four repetitive feeding events at three different prey item densities (50, 100 and 150 nauplii per polyp). Alongside these quantitative experiments, it was tested to what extent the feeding response of corals is triggered by chemical cues. One hour after food addition, extract of Artemia nauplii was added to the incubation chambers to test its effect on subsequent prey capture rates. In all experiments, prey capture was expressed as the number of nauplii consumed per coral polyp. Total capture of Artemia nauplii by G. fascicularis after a single feeding event increased linearly up till a prey item availability of 2000 nauplii per polyp. Maximal capture per feeding event was estimated at 1200 nauplii per polyp, which is higher than rates reported in previous studies. It became apparent that at high densities of Artemia nauplii, the clearance rate method does not discriminate between active capture and passive sedimentation. Repetitive feeding with 50 nauplii per polyp resulted in a constant total prey capture per feeding event. At a supply of 100 nauplii per polyp, total capture decreased after the first feeding event, and remained constant during the subsequent feeding events at a level comparable to the lower food availability. However, at a supply of 150 nauplii per polyp, total capture per event was higher throughout the entire four-hour incubation period, which obfuscates an accurate estimation of the maximal daily food uptake. In all incubations, a decrease in capture efficiency was observed within the course of the feeding event. In all repetitive feeding experiments, capture efficiency increased immediately upon addition of a new batch of food. This increase in efficiency was not caused by a priming effect of extract of Artemia. The inconsistencies in the data show that estimates of prey capture based on clearance rates should be interpreted with caution, because this method does not take into account potential dynamics of prey capture and release.

We performed fertilization experiments with Acropora digitifera, which is one of the dominant scleractinian corals in the Ryukyu Archipelago, Japan, to determine optimal conditions for in vitro manipulations. Our result suggests that conspecific fertilization is essentially complete within 30 min under the experimental conditions used in usual fertilization experiments in corals. Previous in vitro experiments (1 × 105–106 sperm/ml, 4–8 h) are likely to have overestimated the efficiency of fertilization of Acropora spp. in the field. Therefore, we suggest that incubation periods shorter than those used to date (i.e. complete exclusion of sperm 1 h after their addition) would be more appropriate for the estimation of fertilization rates in corals.