Members of the serpin family of serine proteinase
inhibitors play important roles in the inflammatory, coagulation,
fibrinolytic, and complement cascades. An inherent part
of their function is the ability to undergo a structural
rearrangement, the stressed (S) to relaxed (R) transition,
in which an extra strand is inserted into the central A
β-sheet. In order for this transition to take place,
the A sheet has to be unusually flexible. Malfunctions
in this flexibility can lead to aberrant protein linkage,
serpin inactivation, and diseases as diverse as cirrhosis,
thrombosis, angioedema, emphysema, and dementia. The development
of agents that control this conformational rearrangement
requires a high resolution structure of an active serpin.
We present here the topology of the archetypal serpin
α1-antitrypsin to 2 Å resolution. This
structure allows us to define five cavities that are potential
targets for rational drug design to develop agents that will
prevent conformational transitions and ameliorate the associated
disease.