Despite the prevalence of catch per unit effort (CPUE) as a key metric in fisheries assessments it can be fraught with inherent problems that often cause its use as an index of abundance to become contentious. This is particularly the case with abalone, a sedentary shellfish targeted by commercial dive fishers around the globe. It is common practice to standardize CPUE to at least partly address issues about how well it reflects the actual abundance of a stock. Differences between standardized and unstandardized trends may lead to controversy between scientists and stakeholders when standardized trends provide a less optimistic picture of stock status. It is within this context that we applied Linear Mixed Model (LMM) and Generalized Linear Mixed Model (GLMM) methods to standardize CPUE for the Western Zone blacklip abalone fishery in Victoria, Australia. This fishery was chosen for our evaluation because it included substantial population losses from a disease shock during the middle of the time series. The effects of diver, reef location, month and their interactions with year were included as random effects in these models and the results compared with nominal geometric means. The two standardization methods provided similar standardized CPUE trends and clearly demonstrated that a large proportion of the variance could be attributed to diver and spatial effects. The GLMM seemed to explain more variability in the data and produced better precision for standardized CPUEs than LMM. The temporal trend in variability attributed to divers and spatial scales reveals the impact of disease as well as any homo/heterogeneity effect. The CPUE trends responded to the impact of disease against a backdrop of declining stock, however when compared with the inter-annual pattern in nominal CPUE, the standardized trends showed that the decline immediately following the onset of disease was less precipitous. In contrast to what appeared to be an increase in the nominal series during the more recent post-disease period, there was only a slight non-significant increase observable in the standardized trends.

Perennial weeds constitute a serious problem in Greek cotton-growing areas, as they strongly competing against the crop and downgrade the final product. Monitoring weeds at a regional scale and relating their occurrence with abiotic factors will assist in the control of these species. Purple nutsedge, field bindweed, bermudagrass, and johnsongrass were studied in cotton crops for three consecutive growing seasons (2007 through 2009) in a large area of central Greece. Weed densities and uniformities per sampling site were assessed in relation to soil and climatic data. Abundance index (AI), which is highly dependent on abiotic factors, was also estimated, and revealed purple nutsedge to the most persistent and damaging species among the recorded weeds. Field bindweed showed the highest correlation with soil properties and especially with clay content. Furthermore, correlation analysis was used over the sampling years in order to assess the stability of weed occurrence in the sampling sites. Purple nutsedge, field bindweed, and bermudagrass proved to be stable in location and intensity. The weed density spatial distribution was evaluated by using local indicators of spatial autocorrelation (LISA) statistics, and was mapped by ordinary kriging and co-kriging interpolation methods. Only 1 to 3 spatial outliers were identified in each 1 of the 3 yr. Between the two interpolation methods co-kriging delivered better results for field bindweed and purple nutsedge, indicating that soil data could improve the estimation of weed occurrence. These co-kriging interpolated weed maps would be a very useful tool for decision makers in taking appropriate weed control measures.

Assessing the abundance and distribution of mammalian carnivores is vital for understanding their ecology and providing for their long-term conservation. Because of the difficulty of trapping and handling carnivores many studies have relied on abundance indices that may not accurately reflect real abundance and distribution patterns. We developed statistical analyses that detect spatial correlation in visitation data from combined scent station and camera-trap surveys, and we illustrate how to use such data to make inferences about changes in carnivore assemblages. As a case study we compared the carnivore communities of adjacent communal and freehold rangelands in central Namibia. We used an index of overdispersion to test for repeat visits to individual camera-trap scent stations and a bootstrap simulation to test for correlations in visits to camera neighbourhoods. After distilling our presence-absence data to the most defensible spatial scale, we assessed overall carnivore visitation using logistic regression. Our analyses confirmed the expected pattern of a depauparate fauna on the communal rangelands compared to the freehold rangelands. Additionally, the species that were not detected on communal sites were the larger-bodied carnivores. By modelling these rare visits as a Poisson process we illustrate a method of inferring whether or not such patterns are because of local extinction of species or are simply a result of low sample effort. Our Namibian case study indicates that these field methods and analyses can detect meaningful differences in the carnivore communities brought about by anthropogenic influences.

Data were collected on the species richness and abundance of fishes at two sites in the Salonga National Park, Democratic Republic of Congo. Thirty species were identified out of a total of 1,180 fish caught. Claria buthupogon and Synodontis nigriventris (respectively 4.7 and 3.5 catches per net-night) were the most abundant species. Twenty-six other fish species were reported from interviews with local people. Conservation concerns are the burning of breeding sites, use of chemicals for fishing, and the newly introduced practice of dynamite fishing. The effects of these practices in the Park have yet to be documented, but it is likely that these fishing techniques are having negative effects on the fish fauna and urgent action is required to curb such activities, at least within the Park.

The Amami rabbit Pentalagus furnessi is a rare forest-dwelling form endemic to the Amami and Tokuno Islands in Japan. In order to estimate the distribution and abundance of the Amami rabbit we counted their faecal pellets along forest roads and streams as well as within the forests on Amami and Tokuno Islands during January 1993–March 1995. The number of pellets/ km along a stream gave a practical index for measuring relative abundance. The rabbit was estimated to be distributed over about 370 sq km on Amami Island and 33 sq km on Tokuno Island. There was a large variance in faecal abundance among the survey routes. Some populations were completely isolated and thought to be very small. The size of a local population was positively correlated with those of neighbouring populations and the amount of mature forest relative to other serai stages. We compared the results of this survey with those of previous surveys to find that the total population of this species appears to be declining. Some conservation measures are proposed for forest habitat management, designed to avert the decline of the Amami rabbit and to ensure its preservation.