The effects of flow velocity on the fitness-related behaviours of Mesocentrotus nudus remain largely unknown, greatly hampering the efficiency of stock enhancement. To explore the appropriate velocities for stock enhancement, we investigated dislodgement and immobilization velocities up to 90 cm s−1. The experimental results showed that M. nudus (test diameter of ~30 mm) were dislodged at 73.50 ± 7.7 cm s−1 and that M. nudus movement occurred only when the flow velocity was less than 33.40 ± 2.7 cm s−1. Three flow velocities less than 33.40 ± 2.7 cm s−1 (2, 10 and 20 cm s−1) were subsequently used to study the effects of flow velocities on covering behaviour and the righting response time of M. nudus. The downstream movement velocity of M. nudus was significantly larger than that upstream at 2 cm s−1 (P = 0.016) and 10 cm s−1 (P = 0.008), but not at 20 cm s−1 (P = 0.222). The righting response time of M. nudus was significantly longer at 20 cm s−1 than that at 2 cm s−1 (P = 0.015). The present study indicates that a flow velocity less than 20 cm s−1, preferably 2–10 cm s−1, is probably appropriate for the stock enhancement of M. nudus. Notably, the current study is a laboratory investigation without considering the hydrographic complexity in the field. Further studies should be carried out to investigate the long-term effects of water flow on feeding and growth of M. nudus both in the laboratory and the field.