Remains of a Holocene drowned forest in southern Lake Huron discovered in 12.5 m of water (164 m above sea level), 4.5 km east of Lexington, Michigan USA (Sanilac site), provided wood to investigate environment and lake history using several proxies. Macrofossil evidence indicates a forest comprised primarily of conifers equivalent to the modern “rich conifer swamp” community, despite generally low regional abundance of these species in pollen records. Ages range from 7095 ± 50 to 6420 ± 70 14C yr BP, but the clustering of stump dates and the development of 2 floating tree-ring chronologies suggest a briefer forest interval of no more than c. 400 years. Dendrochronological analysis indicates an environment with high inter-annual climate variability. Stable-carbon isotope composition falls within the range of modern trees from this region, but the stable-oxygen composition is consistent with warmer conditions than today. Both our tree-ring and isotope data provide support for a warmer environment in this region, consistent with a mid-Holocene thermal maximum. This drowned forest also provides a dated elevation in the Nipissing transgression at about 6420 14C yr BP (7350 cal yr BP) in the southern Lake Huron basin, a few hundred years before reopening of the St. Clair River drainage.

Between 10,500 and 9000 cal yr BP, δ18O values of benthic ostracodes within glaciolacustrine varves from Lake Superior range from − 18 to − 22‰ PDB. In contrast, coeval ostracode and bivalve records from the Lake Huron and Lake Michigan basins are characterized by extreme δ18O variations, ranging from values that reflect a source that is primarily glacial (∼ − 20‰ PDB) to much higher values characteristic of a regional meteoric source (∼ − 5‰ PDB). Re-evaluated age models for the Huron and Michigan records yield a more consistent δ18O stratigraphy. The striking feature of these records is a sharp drop in δ18O values between 9400 and 9000 cal yr BP. In the Huron basin, this low δ18O excursion was ascribed to the late Stanley lowstand, and in the Lake Michigan basin to Lake Agassiz flooding. Catastrophic flooding from Lake Agassiz is likely, but a second possibility is that the low δ18O excursion records the switching of overflow from the Lake Superior basin from an undocumented northern outlet back into the Great Lakes basin. Quantifying freshwater fluxes for this system remains difficult because the benthic ostracodes in the glaciolacustrine varves of Lake Superior and Lake Agassiz may not record the average δ18O value of surface water.