We apply the immersed boundary (or IB) method to simulate deformation and detachment of a periodic array of wall-bounded biofilm colonies in response to a linear shear flow. The biofilm material is represented as a network of Hookean springs that are placed along the edges of a triangulation of the biofilm region. The interfacial shear stress, lift and drag forces acting on the biofilm colony are computed by using fluid stress jump method developed by Williams, Fauci and Gaver [Disc. Con-tin. Dyn. Sys. B 11(2):519–540, 2009], with a modified version of their exclusion filter. Our detachment criterion is based on the novel concept of an averaged equivalent continuum stress tensor defined at each IB point in the biofilm which is then used to determine a corresponding von Mises yield stress; wherever this yield stress exceeds a given critical threshold the connections to that node are severed, thereby signalling the onset of a detachment event. In order to capture the deformation and detachment behaviour of a biofilm colony at different stages of growth, we consider a family of four biofilm shapes with varying aspect ratio. For each aspect ratio, we varied the spacing between colonies to investigate role of spatial clustering in offering protection against detachment. Our numerical simulations focus on the behaviour of weak biofilms (with relatively low yield stress threshold) and investigate features of the fluid-structure interaction such as locations of maximum shear and increased drag. The most important conclusions of this work are: (a) reducing the spacing between colonies reduces drag by from 50 to 100% and alters the interfacial shear stress profile, suggesting that even weak biofilms may be able to grow into tall structures because of the protection they gain from spatial proximity with other colonies; (b) the commonly employed detachment strategy in biofilm models based only on interfacial shear stress can lead to incorrect or inaccurate results when applied to the study of shear induced detachment of weak biofilms. Our detachment strategy based on equivalent continuum stresses provides a unified and consistent IB framework that handles both sloughing and erosion modes of biofilm detachment, and is consistent with strategies employed in many other continuum based biofilm models.

This paper is concerned with the asymptotic behaviour of solutions to quasilinear hyperbolic equations with nonlinear damping on the quarter-plane (x, t) ∈ ℝ+ x ∈ ℝ+. We obtain the Lp (1 ≤ p ≤ +∞) convergence rates of the solution to the quasilinear hyperbolic equations without the additional technical assumptions for the nonlinear damping f(v) given by Li and Saxton.

There are a number of interesting applications where modeling elastic and/or viscoelastic materials is fundamental, including uses in civil engineering, the food industry, land mine detection and ultrasonic imaging. Here we provide an overview of the subject for both elastic and viscoelastic materials in order to understand the behavior of these materials. We begin with a brief introduction of some basic terminology and relationships in continuum mechanics, and a review of equations of motion in a continuum in both Lagrangian and Eulerian forms. To complete the set of equations, we then proceed to present and discuss a number of specific forms for the constitutive relationships between stress and strain proposed in the literature for both elastic and viscoelastic materials. In addition, we discuss some applications for these constitutive equations. Finally, we give a computational example describing the motion of soil experiencing dynamic loading by incorporating a specific form of constitutive equation into the equation of motion.