Introduction
What if designers and fabricators did too much? Despite the need for an enhanced design practice, specifically in the prototyping and post-making phases, as Song and Paulos (Reference Song and Paulos2021) assume, we are in an era of the built environment. Manmade environments are massified and the civilisation is entirely and completely represented by artificial objects accompanied by the domestication of other-than-humans’ beings. Makers must go beyond the traditional anthropocentric perspective and not neglect relevant knowledge by quickly appropriating novel and innovative creations that might not be scientifically rigorous, ecologically sustainable and ethically sound.
“The access and growing ubiquity of digital fabrication has ushered in a celebration of creativity and ‘making’. However, the focus is often on the resulting static artifact or the creative process and tools to design it. We envision a post-making process that extends past these final static objects – not just in their making but in their ‘unmaking’” (Song and Paulos, Reference Song and Paulos2021).
To merge the gap between humans and nature and to project other ways of manufacturing, designers and engineers are experimenting with biological materials. They are expanding the materials’ arsenal and changing the paradigm from a top-down and humanised creation to a co-creation approach with living organisms (Dade-Robertson et al., Reference Dade-Robertson, Levin and Davies2023; Hénaff, Reference Hénaff2023; Diniz, Reference Diniz2023). This new paradigm is influencing makers to introduce novel methodologies coming from disciplines usually apart from the design field. Therefore, biodesign is a promising field in this new landscape, where the crossing-over between the biological sciences and the design, creative and artistic disciplines, happens. Additionally, the biodesign discipline is emerging as a strong educational tool, holding promise to tackle several challenges in various fields: architecture (e.g. more resilient materials to reduce the negative ecological impact of construction [Andréen & Goidea, Reference Andréen and Goidea2022]); design (e.g. sustainable manufacture of products [Camere & Karana, Reference Camere and Karana2018); materials science (e.g. reduce waste [Mcmeeking et al., Reference Mcmeeking, Dieckmann and Cheeseman2024]); fashion (e.g. sustainable raw materials to reduce the negative impact of production processes [Ng & Wang, Reference Ng and Wang2016; Rathimamoorthy & Kiruba 2020]); and visual communication (e.g. widespread acceptance of new materials [D’Olivo & Karana, Reference D’Olivo and Karana2021]).
Specifically, bacterial cellulose (BC) is a biomaterial that has recently grabbing the attention of the mass media and the broader audience (e.g. Suzanne Lee, Modern Synthesis, Polybion-Gani partnership). Research-wise, BC is an interesting material to investigate due to its low-cost and relatively easy production, treatment and design (Ng & Wang, Reference Ng and Wang2016; Ng, Reference Ng2017; Bastida & Peirano, Reference Bastida and Peirano2020; Kapsali, Reference Kapsali2022; Bell et al., Reference Bell, Chow, Choi and Alistar2023a; Bell et al., Reference Bell, Chow, Lazaro Vasquez, Devendorf and Alistar2023b; Nicolae et al., Reference Nicolae, Roussel, Koelle, Huron, Steimle and Teyssier2023). For its better comprehension a proper investigation of the BC-producing microorganisms and their respective biochemical pathways is required to reach the expectations drawn to this biopolymer.
The aim of this work is to describe why there is a need to better comprehend the biology (taxonomy and genetics) and structure (biochemistry) of BC production. The research goal is to improve the biodesign practicalities calling for more focus on the BC productivity, treatment and functionalisation. Through a narrative review analysis, an overview and critique of current BC production is performed. Additionally, approaches like genome sequencing are highlighted and discussed to help biodesigners in generating crucial insights for a more sustainable and realistic use of BC (Singhania et al., Reference Singhania, Patel, Tsai, Chen and Di Dong2021; Manan et al., Reference Manan, Ullah, Ul-Islam, Shi, Gauthier and Yang2022). In the next sections, it is provided the biological context of BC, including its genomic and biochemical nuances. Lastly, biodesign educational and professional examples are discussed in order to achieve a successful interdisciplinary approach.
Background and related work
Bacterial cellulose producers
The best studied BC producers are the acetic acid bacteria (AAB). They are gram-negative and obligate aerobic bacteria found in a variety of natural sources that are rich in sugar and alcohols (e.g. fruits and fermented foods) (Yang et al., Reference Yang, Chen, Wang, Zhou, Liebl, Barja and Chen2022). AAB phenotypes relate to the acetic acid production, nitrogen fixation (Fuentes-Ramírez et al., Reference Fuentes-Ramírez, Bustillos-Cristales, Tapia-Hernández, Jiménez-Salgado, Wang, Martínez-Romero and Caballero-Mellado2001), pigment production (Malimas et al., Reference Malimas, Yukphan, Takahashi, Muramatsu, Kaneyasu, Potacharoen, Tanasupawat, Nakagawa, Tanticharoen and Yamada2009) and exopolysaccharides generation (Tonouchi, Reference Tonouchi, Matsushita, Toyama, Tonouchi and Okamoto-Kainuma2016; La China et al., Reference La China, Zanichelli, De Vero and Gullo2018; Barja, Reference Barja2021). These microorganisms are also known for producing several aldehydes, ketones and other organic acids through oxidative fermentation (Mamlouk & Gullo, Reference Mamlouk and Gullo2013; Lynch et al., Reference Lynch, Zannini, Wilkinson, Daenen and Arendt2019). Besides producing these compounds AAB can also accumulate a large amount of them extracellularly as happens with BC (Mamlouk & Gullo, Reference Mamlouk and Gullo2013; Lynch et al., Reference Lynch, Zannini, Wilkinson, Daenen and Arendt2019). The most prolific AAB in terms of BC production is Komagataeibacter xylinus (Römling & Galperin, Reference Römling and Galperin2015; Gullo et al., Reference Gullo, Sola, Zanichelli, Montorsi, Messori and Giudici2017). During the past years, several reviews have been published to elucidate the details of AAB taxonomy (Trček & Barja, Reference Trček and Barja2015; Yamada, Reference Yamada, Matsushita, Toyama, Tonouchi and Okamoto-Kainuma2016), biotechnological applications (Saichana et al., Reference Saichana, Matsushita, Adachi, Frébort and Frebortova2015), resistance mechanisms (Nakano & Ebisuya, Reference Nakano, Ebisuya, Matsushita, Toyama, Tonouchi and Okamoto-Kainuma2016; Qiu et al., Reference Qiu, Zhang and Hong2021) and BC production (Gullo et al., Reference Gullo, La China, Falcone and Giudici2018; De Amorim et al., Reference De Amorim, De Souza, Duarte, Da Silva Duarte, De Assis Sales Ribeiro, Silva, De Farias, Stingl, Costa, Vinhas and Sarubbo2020; Barja, Reference Barja2021); however, there are yet research questions in need to be answered. These questions relates simultaneously to the diversity of BC producers and their associated BC biosynthesis pathways.
Apart from K. xylinus, several AAB species are also known to produce BC. Among them are members of the genera Komagataeibacter, Acetobacter, Gluconacetobacter, Rhizobia, Rhodobacter, Agrobacterium and Sarcina (Delmer, Reference Delmer1999; Brown, Reference Brown2004; Morgan et al., Reference Morgan, Strumillo and Zimmer2013, Matsutani et al., Reference Matsutani, Ito, Azuma, Ogino, Shirai, Yakushi and Matsushita2015). Other non-AAB species can also produce BC such as Achromobacter, Alcaligenes, Aerobacter, Azotobacter, Pseudomonas, Dickeya and Lactobacillus (Deinema & Zevenhuizen, Reference Deinema and Zevenhuizen1971; Brown, Reference Brown2004; Jahn et al., Reference Jahn, Selimi, Barak and Charkowski2011; Morgan et al., Reference Morgan, Strumillo and Zimmer2013; Khan et al., Reference Khan, Kadam and Dutt2020). As an example, Khan et al. (Reference Khan, Kadam and Dutt2020), characterised a Lactobacillus hilgardii strain capable of producing BC in high quantities. Using a fructose-rich medium, they observed that L. hilgardii was able to produce immensely pure and crystalline BC with a yield of 7.23 g/ L after 16 days of incubation. Hence, the plethora of organisms able to produce BC represent novel routes of research to detect, engineer, characterise and standardise the best possible BC producer.
One of the easiest ways of producing BC is through kombucha fermentation. Kombucha is a slightly alcoholic and carbonated beverage resulting from the fermentation of a tea-based aqueous solution and sugar by a symbiotic culture of bacteria and yeast (SCOBY) (Villareal-Soto et al., Reference Villarreal-Soto, Beaufort, Bouajila, Souchard and Taillandier2018). At the aqueous-air interface, there is the deposition of BC that forms a layer at the surface of the liquid. This pellicle can be collected by hand for further treatment without any intricate technique. Microbiologically, kombucha is constituted by the AAB such as Gluconobacter sp., Acetobacter sp., Komagataeibacter sp. (de Roos & de Vuyst, Reference De Roos and De Vuyst2018), lactic acid bacteria such as Lactococcus sp. and Lactobacillus sp. Yeasts such as Zygosaccharomyces bailii, Saccharomyces cerevisae, Schizosaccharomyces pombe, Saccharomycodes ludwigii, Kloeckera apiculata, Torulaspora delbrueckii and Brettanomyces bruxellensis have also been detected (Coton et al., Reference Coton, Pawtowski, Taminiau, Burgaud, Deniel, Coulloumme-Labarthe, Fall, Daube and Coton2017; Laavanya et al., Reference Laavanya, Shirkole and Balasubramanian2021).
A recent study by Keating et al. (Reference Keating, Van Zyl, Collins, Nakagawa, Weintraub, Coburn and Young2023) has argued for a formation of a new taxonomy – Novacetimonas hansenii – to incorporate a BC overproducer strain (N. hansenii NQ5) due to insights gained from whole genome analysis. In support of this taxonomical rearrangement, Ryngajłło et al. (Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019) investigated 19 Komagataeibacter genomes and concluded that there was sufficient evidence to distinguish between the K. xylinus and K. hansenii clades. They found variance in the genomic traits related to the carbohydrate uptake and regulation of its metabolism, exopolysaccharide synthesis, plasmid DNA content and the c-di-GMP signalling network that explain the phenotypic diversity found in these clades. This new knowledge represents research routes yet to be explored that directly and indirectly influence BC generation.
Bacterial cellulose biochemistry and synthesis limiting factors
BC possesses better physico-mechanical properties than the plant-derived cellulose due to its nanofibrous 3D structure (Ul-Islam et al., Reference Ul-Islam, Khan and Park2012). Additionally, BC has a high purity and crystallinity, mechanical strength, jellified appearance, porous geometry, biocompatibility and easy mouldability representing a promising material for designers (Khan et al., Reference Khan, Ul-Islam, Ullah, Zhu, Narayanan, Han and Park2022). BC is synthesised through four main sequential enzymatic steps:
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i) Phosphorylation of glucose by the glucokinase;
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ii) Glucose-6-phosphate isomerises into glucose-1-phosphate by the effect of the phosphoglucomutase,
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iii) UDP-glucose is synthesised by the UDP-glucose pyrophosphorylase and
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iv) Cellulose synthase reaction (Yoshinaga et al., Reference Yoshinaga, Tonouchi and Watanabe1997; Singhania et al., Reference Singhania, Patel, Tsai, Chen and Di Dong2021).
In the last step, UDP-glucose polymerases into cellulose by the activity of a membrane protein complex called cellulose synthase, which is an unstable high molecular mass protein that is also responsible for cellulose secretion to the extracellular matrix (El-Saied et al., Reference El-Saied, Basta and Gobran2004). The cellulose synthase consists of four core proteins that are encoded by the cellulose synthase operon containing the genes bcsABCD (Yoshinaga et al., Reference Yoshinaga, Tonouchi and Watanabe1997). However, the operon is not equally observable among the Komagataeibacter species (Saxena and Brown, Reference Saxena and Brown1995; Matsutani et al., Reference Matsutani, Ito, Azuma, Ogino, Shirai, Yakushi and Matsushita2015).
In general, cellulose producers are a relatively well-studied group of microbes but the high cost and low yield of BC production make it necessary to increase the depth of research and characterisation. Specifically, it is necessary to clarify the potential genotype-phenotype dualism related to the BC synthesis, secretion machineries and other relevant cellular processes (Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019). One example is the high phenotypic variability of Komagataeibacter (Gullo et al., Reference Gullo, La China, Falcone and Giudici2018). Since different strains can be recovered throughout the fermentation and BC production experiments (Valera et al., Reference Valera, Torija, Mas and Mateo2015; La China et al., Reference La China, Zanichelli, De Vero and Gullo2018) it is possible that a microbial consortium is needed for achieving the best results. The hypothesis is that different strains prefer different growth conditions within the same production cycle, potentiating a “cascade” effect that results in high BC yields. Therefore, BC production is strain-dependent, differing in the yields, structure and strain stability (Fang & Catchmark, Reference Fang and Catchmark2015; Chen et al., Reference Chen, Lopez-Sanchez, Wang, Mikkelsen and Gidley2018; Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019). Moreover, the fermentation substrate, the culture media and the genetic organisation of the cellulose synthase and its related genes can also account for the detected phenotypic variability (La China et al., Reference La China, Bezzecchi, Moya, Petroni, Di Gregorio and Gullo2020; Singhania et al., Reference Singhania, Patel, Tseng, Kumar, Chen, Haldar, Saini and Dong2022).
Depending if BC is produced by a SCOBY or through pure culture of strains, the substrate requirements might differ as well as other factors related to the equipment and post-production treatments (Fernandes et al., Reference Fernandes, Pedro, Ribeiro, Bortolini, Ozaki, Maciel and Haminiuk2020; Laavanya et al., Reference Laavanya, Shirkole and Balasubramanian2021; Rathinamoorthy & Kiruba, Reference Rathinamoorthy and Kiruba2022; Singhania et al., Reference Singhania, Patel, Tseng, Kumar, Chen, Haldar, Saini and Dong2022). The leading factors contributing to the BC production are the type and concentration of the nitrogen (e.g. peptone) and carbon source (e.g. glucose, sucrose), the dissolved oxygen in suspension (∼10–15%), the pH (∼4–6) and temperature (∼25–35 °C). Various types of wastes and by-products (both having complex chemical compositions) have been tried to grow BC, but the best results observed are from the experiments where additional nutrient sources are supplemented (Fernandes et al., Reference Fernandes, Pedro, Ribeiro, Bortolini, Ozaki, Maciel and Haminiuk2020; Nascimento et al., Reference Nascimento, Torres, Freitas, Reis and Crespo2021; da Silva et al., Reference Da Silva, De Medeiros, De Amorim, Do Nascimento, Converti, Costa and Sarubbo2021). Other relevant factors are the proportion (∼1:15–1:10) and age (∼3–30 days) of the inoculation and the co-substrate concentration (e.g. ethanol, vitamins) (Fernandes et al., Reference Fernandes, Pedro, Ribeiro, Bortolini, Ozaki, Maciel and Haminiuk2020; Singhania et al., Reference Singhania, Patel, Tseng, Kumar, Chen, Haldar, Saini and Dong2022). Alterations in the biochemical pathways for microbial growth and cellulose synthesis differ between strains (Masaoka et al., Reference Masaoka, Ohe and Sakota1993; Toyosaki et al., Reference Toyosaki, Naritomi, Seto, Matsuoka, Tsuchida and Yoshinaga1995; Czaja et al., Reference Czaja, Young, Kawecki and Brown2007; Ochaikul et al., Reference Ochaikul, Suwanposri, Yukphan and Yamada2013; Zeng et al., Reference Zeng, Laromaine and Roig2014; Fang & Catchmark, Reference Fang and Catchmark2015). Other soluble exopolysaccharides like acetan and its derivatives and levan that indirectly affect BC production also vary among BC-producing strains (Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019). In summary, the genetic instability of the cellulose synthase, its differential presence in AAB and the paraphernalia of other factors directly and indirectly affecting BC synthesis make its production an extremely hard experimental setup. This constitutes a major challenge for biodesigners, which would benefit from a standardisation of BC-producing experimental protocols.
Bacterial cellulose, genomics and proteomics
About the genomic features of the Komagataeibacter genus, Matsutani et al. (Reference Matsutani, Ito, Azuma, Ogino, Shirai, Yakushi and Matsushita2015) analysed the whole genome of Komagataeibacter medellinensis NBRC 3288 and found the particular genetic conditions that make this strain lose and regain the ability to synthesise BC. They also found other mutations associated with such phenotypic variance. Together, this genetic instability and easiness to lose and regain abilities related to cellulose production constitute a risk of using this strain in a standard routine. Such risk can be extrapolated to other strains belonging to the Komagataeibacter genus since these bacteria are known to have transient phenotypes in their essential metabolism (Beppu, Reference Beppu1994; Coucheron, Reference Coucheron1991; Takemura et al., Reference Takemura, Horinouchi and Beppu1991; Sokollek et al., Reference Sokollek, Hertel and Hammes1998; Azuma et al., Reference Azuma, Hosoyama, Matsutani, Furuya, Horikawa, Harada, Hirakawa, Kuhara, Matsushita, Fujita and Shirai2009; Castro et al., Reference Castro, Cleenwerck, Trček, Zuluaga, De Vos, Caro, Aguirre, Putaux and Gañán2013; La China et al., Reference La China, Bezzecchi, Moya, Petroni, Di Gregorio and Gullo2020). For instance, Florea et al. (Reference Florea, Hagemann, Santosa, Abbott, Micklem, Spencer-Milnes, De Arroyo Garcia, Paschou, Lazenbatt, Kong, Chughtai, Jensen, Freemont, Kitney, Reeve and Ellis2016a) found and described two additional cellulose synthase operons in Gluconacetobacter hansenii and several previously unknown genes related to BC production. Recently, Bimmer et al. (Reference Bimmer, Reimer, Klingl, Ludwig, Zollfrank, Liebl and Ehrenreich2023) performed a proteomic analysis on the same strain (Komagataeibacter hansenii ATCC 53582) and their characterisation of the regulatory diguanylate cyclases (dgcA and dgcB deleterious mutants) suggested a new regulatory mechanism of cellulose synthesis in K. hansenii.
Recent studies have shown the extensive involvement of the operon bcsABCD in the biosynthesis, extracellular transport and assembly of cellulose (Manan et al., Reference Manan, Ullah, Ul-Islam, Shi, Gauthier and Yang2022). The cellulose synthase enzyme is encoded by two types of operons, and both types consist of four genes:
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i) Type I: bcsA-D (Matsutani et al., Reference Matsutani, Ito, Azuma, Ogino, Shirai, Yakushi and Matsushita2015) and
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ii) Type II: bcsABII, bcsX, bcsY and bcsCII (Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019).
These two types of operons are subjected to mutations. Specifically, the bcsC subunits (related to the cellulose export through the membrane) are prone to disruption, suggesting that cellulose export is subject to evolutionary forces (Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019). However, the cellulose synthase is a complex enzyme and other descriptions have been referred including a third type of operon and the presence of more related genes (Römling & Galperin, Reference Römling and Galperin2015; La China et al., Reference La China, Bezzecchi, Moya, Petroni, Di Gregorio and Gullo2020; Manan et al., Reference Manan, Ullah, Ul-Islam, Shi, Gauthier and Yang2022). Despite the well-conserved function of the BcsA and BcsB (responsible for cellulose synthesis activity and β-glucan chain formation, respectively (Ross et al., Reference Ross, Mayer and Benziman1991; Yoshinaga et al., Reference Yoshinaga, Tonouchi and Watanabe1997; Park et al., Reference Park, Jung and Khan2009; Römling & Galperin, Reference Römling and Galperin2015; Morgan et al., Reference Morgan, McNamara, Fischer, Rich, Chen, Withers and Zimmer2016)), the function of BcsC and BcsD is still under debate (Saxena et al., Reference Saxena, Kudlicka, Okuda and Brown1994; Hu et al., Reference Hu, Gao, Tajima, Sunagawa, Zhou, Kawano, Fujiwara, Yoda, Shimura, Satoh, Munekata, Tanaka and Yao2010; Iyer et al., Reference Iyer, Catchmark, Brown and Tien2011). Regarding the genomic instability of the AAB, there are also the insertion sequences that cause disruptions in essential biochemical mechanisms and also hamper cellulose synthesis (Asai, Reference Asai1968; Valla et al., Reference Valla, Coucheron and Johs1987; Coucheron, Reference Coucheron1991; Takemura et al., Reference Takemura, Horinouchi and Beppu1991; Beppu, Reference Beppu1994; Coucheron, Reference Coucheron1993; Sokollek et al., Reference Sokollek, Hertel and Hammes1998; Steiner and Sauer, Reference Steiner and Sauer2001; Matsutani et al., Reference Matsutani, Ito, Azuma, Ogino, Shirai, Yakushi and Matsushita2015; Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019). So, the genomic landscape of AAB represents a plethora of challenges to be addressed to reach a stable and efficient BC production.
Therefore, it is questionable that BC can be assumed as a definitive solution for more sustainable manufacturing practices, despite the intellectual property protection efforts attempted in the recent years (Da Silva et al., Reference Da Silva, De Medeiros, De Amorim, Do Nascimento, Converti, Costa and Sarubbo2021). Another relevant limitation regarding the use of Komagataeibacter spp. is that only a limited fraction of their already identified proteins possess assigned functional categories (ca. 30% for K. xylinus E25 (Ryngajłło et al., Reference Ryngajłło, Kubiak, Jędrzejczak-Krzepkowska, Jacek and Bielecki2019). Such a lack of knowledge regarding protein function represents an opportunity for further exploration of proteomics (Zhang et al., Reference Zhang, Li and Nie2010).
Such instability represents a risk for prototyping research and the effort to get outside of the lab is substantial (Bernstein et al., Reference Bernstein, Reifschneider, Bennett and Wetmore2017). The only way to mitigate these risks is to increase the effort to decipher the genomic and biochemical details of AAB BC producers. Ultimately, only after that effort will be possible to obtain a standard framework to be utilised across disciplines and outside of the lab.
Bacterial cellulose and genetic engineering
Several attempts to genetically engineer AAB to generate higher yields of BC have also been investigated. Jang et al. (Reference Jang, Kim, Kim, Shim, Ryu, Park and Lee2019) engineered a K. xylinus strain and were able to more than double the yield of BC production (3.15 g/L) by overexpressing the heterologous pgi and gnd genes from Escherichia coli or Corynebacterium glutamicum. To increase the ability of K. xylinus to use mannose as a carbon source, Yang et al. (Reference Yang, Cao, Li, Chen, Wu, Zhou and Hong2023) engineered a strain capable of better using mannose-rich biomass as a sole carbon source through the expression of the mannose kinase (mak) and phosphomannose isomerase (pgi) genes from E. coli. Their results showed that the yield almost doubled while improving BC tensile strength and elongation potential. Since the yield is not the only feature relevant for BC generation, Huang et al. (Reference Huang, Liu, Sun, Li, Liu, Jia, Xie and Zhong2020) used the clustered regularly interspaced short palindromic repeats interference (CRISPRi) system to test and control the BC mechanical characteristics such as porosity and crystallinity by overexpressing the galU gene (responsible for controlling the carbon metabolic flux between BC synthesis and the pentose phosphate pathway). They found that the galU is positively associated with the BC crystallinity and negatively associated with the porosity. To allow a standard genetic engineering approach, Florea et al. (Reference Florea, Hagemann, Santosa, Abbott, Micklem, Spencer-Milnes, De Arroyo Garcia, Paschou, Lazenbatt, Kong, Chughtai, Jensen, Freemont, Kitney, Reeve and Ellis2016a) developed a modular toolkit to guide the genetic engineering of K. rhaeticus aiming for a high BC yield. Their toolkit works twofold, being applied to genetically engineer K. rhaeticus and applying extracted proteins to the BC itself. However, the toolkit is tailored specifically to this strain and optimised protocols must be tested to every other strain. Additionally, the BC mechanical properties (e.g. tensile, stiffness, viscoelasticity, porosity) have also to be studied to achieve a usable biomaterial (see Chen et al., Reference Chen, Lopez-Sanchez, Wang, Mikkelsen and Gidley2018, where they analysed the mechanical properties of six different Komagataeibacter strains, five K. xylinus and one K. hansenii).
Real-world implications for bacterial cellulose
BC represents an interesting material due to its malleability, biocompatibility and strength (Florea et al., Reference Florea, Reeve, Abbott, Freemont and Ellis2016b). Up until now, BC has been explored for a varied range of applications such as cosmeceuticals, mining and refinery, textiles, sewage treatment, foods, paper industry, biomedical apparel, electronics, etc. (Singhania et al., Reference Singhania, Patel, Tsai, Chen and Di Dong2021). According to Manan et al. (Reference Manan, Ullah, Ul-Islam, Shi, Gauthier and Yang2022) and Rathinamoorthy and Kiruba (Reference Rathinamoorthy and Kiruba2022), the main limitations for BC production for mundane and technical applications can be summarised as related to the:
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i) Culture media required for production: since different strains show different nutritional needs and phenotypes;
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ii) Post-treatment processes: since every treatment is tailored for its application and so a high degree of specialisation is necessary in research, development and industrial manufacture of every unique appliance and;
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iii) Scaling-up: since it is not trivial how to produce high amounts of BC in a stable, controlled and cost-effective manner.
The argument is that only possessing a full comprehension of the BC biodesigners can approach BC as an innovative and sustainable polymer. The BC producers’ phenotypic variation and how this plasticity corresponds to the different BC chemical and functional features constitute additional challenges for biodesigning.
Practical and industrial biodesign applications
To address the complex nature of BC, professionals are pushing the boundaries of knowledge, bringing other disciplines to their practice. Neri Oxman’s and Suzanne Lee’s works represent the next paradigm shift in biotechnological engineering, biofabrication, augmented architecture and biomaterials.
Oxman’s Aguahoja project focused on developing a robotic platform for 3D printing biomaterials, including cellulose (Duro-Royo et al., Reference Duro-Toyo, Zak, Ling, Tai, Hogan, Darweesh and Oxman2018). It is a 5-metre tall biocomposite structure, composed of several biopolymers such as BC. Aquahoja was developed through a computationally driven approach through additive manufacturing (Guzzi & Tibbitt, Reference Guzzi and Tibbitt2020), and its design was intended to allow temporality, being able to sense, inform the user of and adapt to changes in the surrounding ecosystem. The team behind Aquahoja found that shape and materiality are directly informed by physical properties (e.g. stiffness and opacity), environmental conditions (e.g. temperature and relative humidity) and fabrication technical constraints (e.g. arm speed and nozzle pressure). Such structure aims at optimised structural stability, flexibility and visual connectivity. Designed for biodegradability, Aquahoja’s exposure to environmental conditions like rainwater will disassemble its structure until its disappearance, giving back the biological building blocks to the natural nutrient cycle.
As a pioneer in merging biology and design, Suzanne Lee has been working on removing the boundaries within the two disciplines. As the CEO of BiofabricateFootnote 1 (hosting, consulting and education company for biology-led innovation), she argues that “we have the tools to make the same things [as Nature] – without killing the animal, without cutting down the tree. We can programme biology to do it in a much more efficient way using minimal and renewable resources.”Footnote 2 Suzanne Lee’s prediction is that the fourth industrial revolution will be a material one, led by biology. Developing BC-based fashion prototypes for 20 years she recalls that “the technology was absolutely right [20 years ago] but people just weren’t ready.”1
Biodesigners have also explored BC as a design material. Carolina De Lara (Reference De Lara2024) developed BC-based composite textiles to be applied in footwear designs while defining the work methods tailored for designers with a non-biological background. Fiona Bell and colleagues developed an interactive breastplate biofabricated by SCOBY (Reference Bell, Chow, Choi and Alistar2023a) and a non-invasive bio-digital calendar that focus on the SCOBY’s well-being (Reference Bell, Coffie and Alistar2024). Ofer & Alistar (Reference Ofer and Alistar2023), created an immersive learning experience for biodesigning with kombucha. They focused on the sensory experience of designing with livingness and reporting through an autoethnographic research method. In practice, a lab journal was used for documentation, including writings on the reflective sensory engagement experience through the in-person contact with kombucha and SCOBY (sewing and embroidering, layering, laser cutting and engraving and moulding). Interestingly, Netta Ofer and Alistar (Reference Ofer and Alistar2023) offer a personal and non-scientifically take on growing BC while there is enough knowledge to grow it with more confidence: “how and when to feed it, what a healthy layer looks like, when a new layer should be expected, etc. All these nuances in the SCOBY’s growth were difficult to predict reliably, as each microbial culture and each grown layer had different behaviour and timeline. However, within that uncertainty, during the research team’s meetings, [Netta Ofer] would describe the growth from her own sensory point of view.” Reflecting about designing with living microorganisms is necessary but not sufficient; the current knowledge on growing AAB and SCOBY and producing BC cannot be neglected. Both can be achieved together. When not performed simultaneously, it constitutes an example of the need for a more robust interdisciplinarity approach.
Regarding the industrial and commercial applications, Polybion™Footnote 3 is a company that aims to source bio-based materials to the market, and Celium™ is their first biomaterial, formed by “premium cultivated cellulose.” Despite Polybion’s promises and media attention in the leather-alternatives’ sector, Celium’s features still requires further development before being presented as a more sustainable solution. This occurs because the material still requires a polyurethane coating for durability, and it works in combination with synthetic polymers. To achieve a more sustainable biomaterial, the approach must deviate from the reliance on petroleum-based plastics. It is urgent to explore other materials that do not hinder the biodegradability potential.
Consequently, the manufacture of BC is questionable and must be challenged in terms of its sustainable promises. The company assumes the compromise of durability in detriment of the biodegradability and sustainability by arguing that a long-lasting feature reduces frequent replacements, minimising waste generation and the associated environmental footprint (personal communication). The dilemma deserves a more critical view and justify the continue research and development of better solutions to assure the sustainability and durability of biomaterials. Interestingly, the product is already being marketed as a whole solution through a partnership with Gani,Footnote 4 while there are several questions to be answered. Therefore, the research purpose is to continue to elucidate, clarify and further explore the potential of novel solutions in addressing world problems (Popper, Reference Popper1959). Thus, biodesigners must take these cautionary notions into account when performing industrial-led briefings.
New curricula for biodesign
Questioning the participation of non-human organisms in research, Chen and Pschetz (Reference Chen and Pschetz2024) argue for a “microbial revolt.” To activate it they developed a workshop that “invites designers and biologists to reflect upon the invisible labour of lab organisms that support their research.” As often seen in BC experiments, contaminations hinder the laboratory work and increase the challenges for research. According to Chen and Pschetz (Reference Chen and Pschetz2024), microbial cell death and contaminations constitute microbial forms of resistance, refusal and non-cooperation to human activities. The workshop designs comprise the following steps:
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i) Microbial embodiment and role-play;
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ii) Journaling and group sharing;
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iii) Artefacts/revolts creation (“Chindōgus”);
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iv) Sketching/illustrating the results; and
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v) Group sharing of the results.
By carrying out interviews with workshop participants, Chen and Pschetz (Reference Chen and Pschetz2024) were able to find bottlenecks to interdisciplinarity related to main themes such as the power dynamics inside the lab, care ecologies and research creative freedom. Such creative freedom can be tackled by blurring the boundaries between the learning, the making and the growing (Correa & Holbert Reference Correa and Holbert2021). Correa and Holbert (Reference Correa and Holbert2021) proposed the concept of “interspecies creative learning” that aims to foster the work with more-than-humans. So, their Myco-kit represents a biodesign toolkit to allow the learning and prototyping explorations for a more ecologically conscious practice. Despite being developed for young children, it may be potentially useful for older audiences. Therefore, by creating liminal spaces where those boundaries can be contested (Chen & Pschetz, Reference Chen and Pschetz2024), “interspecies creative learning” (Correa & Holbert, Reference Correa and Holbert2021) and creative discovery that respects the more-than-humans’ agency can potentially give rise to a more robust interdisciplinarity. Additionally, it can also be considered incorporating themes in the more-than-humans’ agenda like their temporalities (Oktay et al., Reference Oktay, Ikeya, Lee, Barati, Lee, Chen, Pschetz and Ramirez-Figueroa2023), representation as participatory decision makers,Footnote 5 values and perspectives (Bekker et al., Reference Bekker, Eriksson, Fougt, Hansen, Nilsson and Yoo2023) and engagement and embodying (Light, Reference Light2024).
Light (Reference Light2024) argues for “approaches that involve people in being-with, designing-with and participating-as non-humans” (p. 2). These three aspects should be inserted into the biodesign curriculum, to allow a more non-anthropogenic curriculum. This calls for more creative tools to be explored, such as imagination – “imagination is invoked to bring in non-human actors; the humans ‘becoming’ other beings to do tasks.” (Light, Reference Light2024, p. 3). Assuming that it is challenging to speak of or from the more-than-humans’ experience, the exercise stimulates different non-human perspectives and phenomenological possibilities. At least, biodesigners need improved and complete design representations, that allow the development of more representative biological metaphors encompassing the appropriate more-than-humans’ agency (Dade-Robertson & Zhang, Reference Dade-Robertson and Zhang2024).
Bekker et al. (Reference Bekker, Eriksson, Fougt, Hansen, Nilsson and Yoo2023) defined challenges in teaching more-than-human perspectives in the field of Human-Computer Interactions. Despite not being directly aimed at biodesigners, the focus on practitioners coming from non-biological backgrounds can relate to design as well. They defined three main themes relevant to the more-than-humans’ perspectives: species, things and designers, and from their experience, the identified challenges are (Bekker et al., Reference Bekker, Eriksson, Fougt, Hansen, Nilsson and Yoo2023, p. 57):
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i) Representation: “who might speak on behalf of whom”;
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ii) Inclusion: “how can students make sure to include all the relevant perspectives – including the more-than-human”;
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iii) Human and non-human designers: “if the designer is a non-human (…) how might this influence the design process”;
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iv) Outcome and effect: “what are the success criteria for working on a project with more-than-human players”;
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v) Role of (bio) technology: “if/how/when technologies are necessary, or whether it is more fruitful to develop tools with no technologies involved”;
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vi) Bias: how to go beyond “western thinking, and the hegemony of modernist paradigms (…) to bring in perspectives from other cultures that are more aligned with a more-than-human ecological worldview” (p. 57).
The use of biological probes can facilitate and enhance the experience of teaching and learning biodesign maintaining the care for the more-than-perspectives. Briefly, biological probes “are intended to provide the setting in which it is possible to engage with biological systems from a design perspective” (Ramirez-Figueroa, Reference Ramirez-Figueroa2017, p. 8). They allow the engagement with other organisms and their phenotypes. Therefore they:
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i) Enable open-ended, non-deterministic design outcomes;
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ii) Operate within rigorous domains and objectives;
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iii) Articulate throughout direct engagements with living systems and;
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iv) Operate as inspirations for critical thinking.
Ultimately, the deployment of biological probes can extend the biodesign teaching practice outside of the lab and formal educational spaces. As Chappell et al. (Reference Chappell, Perez and Okada Takara2023) observed, “informal learning spaces can empower multidirectional and multigenerational knowledge exchange and advance a more diverse, inclusive, and innovative biodesign enterprise” (p. 1). Their work shows the benefits of biodesign education in bringing other actors. Artists, teachers, activists and researchers can activate creativity, playfulness, storytelling and ancestral scientific knowledge in informal learning spaces such as community bio-labs, summer camps and art-based maker spaces (Chappell et al., Reference Chappell, Perez and Okada Takara2023).
Interdisciplinarity for biodesign bacterial cellulose
The weak link between the genetics and the biochemistry surrounding BC production and the design setup is hindering the proper transfer of knowledge between microbiologists, engineers, designers and manufacturers (Bernstein et al., Reference Bernstein, Reifschneider, Bennett and Wetmore2017; Chen et al., Reference Chen, Lopez-Sanchez, Wang, Mikkelsen and Gidley2018; Zhou et al., Reference Zhou, Deng, Hwang and Ji2020; Da Silva et al., Reference Da Silva, De Medeiros, De Amorim, Do Nascimento, Converti, Costa and Sarubbo2021; Kapsali, Reference Kapsali2022; Pereira & Franco, Reference Pereira and Franco2022).
Taking advantage of interdisciplinary approaches, such ambitions can be achieved through research combining different disciplines. Importantly, it is urgent that genomic analysis and other “omics” approaches are included in the biodesign practice (Zhang et al., Reference Zhang, Li and Nie2010; Misra et al., Reference Misra, Langefeld, Olivier and Cox2019; Ryngajłło et al., Reference Ryngajłło, Jędrzejczak-Krzepkowska, Kubiak, Ludwicka and Bielecki2020). This effort has the potential to allow the development and use of standard design and bioengineering prototyping protocols (Table 1). These recommendations are aligned with the activities proposed by Chappell et al. (Reference Chappell, Perez and Okada Takara2023) for community biodesign and can complement them in the particular case of studying BC as a biological probe.
Recently Brooks and Alper (Reference Brooks and Alper2021) argued that synthetic biology needs to step outside of the lab. They pointed out the challenges of storage and stability of the biological and computational resources for use in other-than-research contexts. Therefore, they suggest the development of platforms suitable for three main outside-the-lab scenarios:
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i) bioproduction on remote and non-conventional contexts;
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ii) biosensing and;
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iii) closed-loop systems (e.g. therapeutics and drug delivery).
Such scenarios would potentially help to mitigate the technical challenges occurring outside of the lab like genetic stability of the biological material, economics related to resources and infrastructure and feasibility of the technical operations. Still, the multiple disciplines and competences needed for the proper transfer of knowledge outside of the lab constitute a barrier. Additionally, these barriers potentiate the appearance of an “inside-the-lab-syndrome” (Bernstein et al., Reference Bernstein, Reifschneider, Bennett and Wetmore2017; Flink & Rüffin, Reference Flink, Rüffin, Simon, Kuhlmann, Stamm and Canzler2019; Zhou et al., Reference Zhou, Deng, Hwang and Ji2020; Pereira & Franco, Reference Pereira and Franco2022). Therefore, such boundaries must be removed to increase interdisciplinarity and allow a more robust research and prototyping of innovative, sustainable and attainable solutions. Still, such effort must be accomplished taking into consideration the rigorous knowledge coming from the involved disciplines. As an example, the “Microbial Revolt” workshop attempted by Chen and Pschetz (Reference Chen and Pschetz2024) allowed the observation of “key epistemic differences between designers and biologists, mapped different approaches to more-than-human care and ecologies, and revealed the potential for design to challenge the secluded and productionist culture in biological laboratories.” So, a revolt can be seen simultaneously as a creative method and for more-than-human designs and a enacting tool for interdisciplinarity.
Since the synthetic biology possesses several tools for interdisciplinary projects between biologists and engineers, a stronger connection and sharing of data and tools and frameworks are essential. According to Tang et al. (Reference Tang, An, Huang, Vasikaran, Wang, Jiang, Lu and Zhong2020), “synthetic biology applies genetic tools to engineer living cells and organisms analogous to the programming of machines (…) [it] aims to program biological systems to perform user-defined functions.” Its engineering principle has paved the way for its establishment as a proper engineering field. To meet this end, Florea et al. (Reference Florea, Reeve, Abbott, Freemont and Ellis2016b) reported a genetic engineering toolkit for Komagataeibacter consisting of experimental protocols, modular plasmids, promoters to target, reporter proteins and inducible constructs that allow external gene expression control. Singhania et al. (Reference Singhania, Patel, Tsai, Chen and Di Dong2021) reviewed and presented the mechanisms of and for genetic engineering aimed at BC production. They included the “heterologous overexpression of glucose 6-phosphate isomerase pgi gene from Escherichia coli,” the “gdh knock down” and “crdS gene introduction and expression to simultaneous synthesise cellulose/curdlan” (Singhania et al., Reference Singhania, Patel, Tsai, Chen and Di Dong2021, p. 6798).
Led by the example of biomineralisation, Dade-Robertson et al. (Reference Dade-Robertson, Ramirez Figueroa and Zhang2015) questioned the synthetic biology approaches in the design realm. They argued that synthetic biology can be employed as a design approach to simplify the engineering design cycle, describe DNA sequences and their products as design building blocks and overcome complex laboratory practices of recombinant DNA. Additionally, biodesigners can engage with the biological media settings, the working strain itself through genetic manipulation or a combination of both (Dade-Robertson et al., Reference Dade-Robertson, Levin and Davies2023). However, it is also important to assure that the more-than-human agency is taken into consideration during synthetic biology experiments.
Incorporating knowledge from the biological sciences into the design practice expands the idea of making and prototyping. Biopolymers like BC are alive and unpredictable, and they can be programmable if a deep understanding is set beforehand and tried thereafter. Hence, the skillset of biodesigners deserves a shift towards a mediating and open-minded approach to the design process to allow a co-performance with nature (Camere & Karana, Reference Camere and Karana2018; Dade-Robertson et al., Reference Dade-Robertson, Levin and Davies2023; Diniz, Reference Diniz2023; Hénaff, Reference Hénaff2023).
The non-anthropogenic concerns are becoming increasingly important in this new design approach. They relate to the more-than-humans agency and embodiment (Light, Reference Light2024) and temporalities (Oktay et al., Reference Oktay, Ikeya, Lee, Barati, Lee, Chen, Pschetz and Ramirez-Figueroa2023). Therefore, this change potentially allows the development of a wealthier society and a more balanced interpretation of being. Ultimately, an enhanced awareness about nature’s interests promotes the construction of a society that goes beyond humans, relying in post-humanist theories interpretation of being (Camere & Karana, Reference Camere and Karana2018; Neimanis, Reference Neimanis2016). Hence, to promote proper interdisciplinarity setups in the biodesign realm the general and practical biology of the organisms under study cannot be neglected. To erase the barriers of interdisciplinarity, other disciplines and more creative approaches surrounding the design process of prototyping with living materials must be included in the education and practice of biodesign on a regular basis (Parkes & Dickie, Reference Parkes and Dickie2013; Gome et al., Reference Gome, Fein, Waksberg, Maayan, Grishko, Wald and Zuckerman2019; Da Silva et al, Reference Da Silva, De Medeiros, De Amorim, Do Nascimento, Converti, Costa and Sarubbo2021; Andréen and Goidea, Reference Andréen and Goidea2022).
Quoting Suzanne Lee, the future for interdisciplinarity in biodesign will be a space “where empirical data-based, evidence-tested, hypothesis-focused science meets hunch-driven, intangible and tacit ideation.”1 There is a just collaboration between humans and nature that can be achieved, with time, investment and multistakeholders’ acceptance.
Limitations and future steps
The dynamism of the biodesign field is pushing the boundaries of disciplines that now are merging. The updated educational curricula are empowering biodesigners to get comfortable with more technical approaches coming from genomics and computational technology. This study highlighted key aspects of BC production specifically from the perspective of its biological and biochemical features.
The work from Huang et al. (Reference Huang, Liu, Sun, Li, Liu, Jia, Xie and Zhong2020), Jang et al. (Reference Jang, Kim, Kim, Shim, Ryu, Park and Lee2019) and Yang et al. (Reference Yang, Cao, Li, Chen, Wu, Zhou and Hong2023) exemplifies that BC synthesis is not trivial and an interdisciplinary effort needs to be seriously implemented. However, there are still challenges to be addressed that were not included in this paper such as the effects of epigenetics on BC production (Dade-Robertson et al., Reference Dade-Robertson, Levin and Davies2023; Orlovska et al., Reference Orlovska, Podolich, Kukharenko, Zaets, Reva, Khirunenko, Zmejkoski, Rogalsky, Barh, Tiwari, Kumavath, Góes-Neto, Azevedo, Brenig, Ghosh, De Vera and Kozyrovska2021).
The first limitation of this study is that the BC producers’ biodiversity and biochemistry were not fully detailed. The second regards the limited review of the design and industrial whole body of work performed in this study. However, the objective was not to perform an in-depth literature review but to inform biodesigners about the complexity of experimenting with BC.
The challenge to map, detail and standardise concepts and tools in biodesign is clear, and it would be interesting if the biodesign community could join forces to address such tasks. One way would be to create regional networks of interdisciplinary biodesigners. One of the first activities delivered by such networks could be the creation of biodesign experimental guidelines, such as the ones developed by Florea et al. (Reference Florea, Reeve, Abbott, Freemont and Ellis2016b) for guiding genetic modifications in K. rhaeticus. Guidelines for selecting the right BC-producing strains, delineating their growth conditions and post-treatment protocols for several artistic and applicable uses, are also crucial. Additionally, it is also urgent to refocus on guaranteeing scientific rigour and safety procedures for laboratory work. Performing it at the regional level would increase the locally anchored robustness of local communities.
Interdisciplinarity involves different actors to negotiate and agree. However, to transfer the knowledge and results coming from interdisciplinary projects requires a communication effort and biodesigners need to practice it. The “inside-the-lab-syndrome” is an issue, and biodesign schools should expose students to real-world scenarios, bridging the gap between theory, prototyping and artistic and industrial applications and challenges.
Conclusions and impact statement
One of the issues of BC production is the reporting of experiments without taking a rigorous stance on the complexity related to the biology (e.g. investigating the bcsABCD operon (Wong et al., Reference Wong, Fear, Calhoon, Eichinger, Mayer, Amikam, Benziman, Gelfand, Meade and Emerick1990; Yoshinaga et al., Reference Yoshinaga, Tonouchi and Watanabe1997) and biochemistry of its production (e.g. Ng and Wang, Reference Ng and Wang2016)). Practitioners in general, and biodesigners in particular, need to have a greater understanding in terms of the supplies necessary to grow microorganisms such as BC producers, their genetic background and the post-treatment methodologies available to produce, treat and prototype cellulose and other biopolymers at reasonable yields. Since prototyping is one of the last stages of a design setup, it is essential to expand the boundaries of research to implement the interdisciplinary mindset.
Still, the genetic landscape of BC producers needs to be further studied, catalogued and experimented, to allow a robust design practice (Singhania et al., Reference Singhania, Patel, Tsai, Chen and Di Dong2021). The diversity of strains like K. hansenii, K. xylinum and K. ucaveti confirms the urgent need for the full comprehension of the complete array of factors that affects BC production.
Finally, more effort must be put into the exploration of appropriate cultivation methods, including the optimised and cost-effective substrates and tailored equipment to increase the productivity of BC. Then, it is necessary to develop and disseminate micro- and large-scale protocols to allow the fine-tuning and the proper transfer of knowledge and results associated with BC production across fields and organisations. However, these recommendations might not be enough to fully deploy sustainable and widespread solutions to the market. Interdisciplinarity and frequent discussions inside and outside the lab can be key.
Consequently, the ethical compromise towards a more sustainable future must be taken seriously for all biomaterials since it is not an exclusive feature of BC. Lastly, only adding an enhanced design practice, together with the application of quality and safety standards to grow target microorganisms and handle cellulose, biodesigners can expect to have a say in researching, applying and deploying solutions to the environmental, industrial and artistic challenges where BC can be applied.
Data availability statement
Data availability is not applicable to this article as no new data were created or analysed in this study.
Acknowledgements
This work benefitted from the network provided by the Bauhaus of the Seas Sails EU-funded project through the grant agreement ID 101079995. The author wants to thank Cristóvão Roussado for the critical conversations regarding the topics here presented.
Funding statement
CP-R was supported by a grant from eGames Lab project, funded by the PRR (Plano de Recuperação e Resiliência português, 02-C05-i01.01-2022.PC645022399-00000057). ITI/LARSyS is a collaborative laboratory funded by the Fundacao para a Ciencia e Tecnologia Project UIDB/50009/2020. The funders had no role in the study design, data collection and interpretation or the decision to submit the work for publication.
Competing interests
The author declares no conflict of interest.
Ethics statement
Ethical approval and consent are not relevant to this article type.
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