Hostname: page-component-78c5997874-mlc7c Total loading time: 0 Render date: 2024-11-05T02:30:45.708Z Has data issue: false hasContentIssue false
  • English
  • Français

Potential model weeds to study genomics, ecology, and physiology in the 21st century

Published online by Cambridge University Press:  20 January 2017

Wun S. Chao ,
Dave P. Horvath ,
James V. Anderson  and
Michael E. Foley
Dave P. Horvath
Affiliation:
U.S. Department of Agriculture—Agricultural Research Service, Biosciences Research Laboratory Plant Science Research, Fargo, ND 58105-5674
James V. Anderson
Affiliation:
U.S. Department of Agriculture—Agricultural Research Service, Biosciences Research Laboratory Plant Science Research, Fargo, ND 58105-5674
Michael E. Foley
Affiliation:
U.S. Department of Agriculture—Agricultural Research Service, Biosciences Research Laboratory Plant Science Research, Fargo, ND 58105-5674
Get access Rights & Permissions [Opens in a new window]

Abstract

Plant model systems have contributed greatly to the dramatic progress in understanding the fundamental aspects of plant biology. Using model weeds will also help facilitate focused funding and research in the weed science community. Criteria for developing model weeds require attention to weedy characteristics that impart economic losses and a wide geographic distribution, attributes that present the potential for political and scientific support. Expressed sequence tag (EST) databases for model weeds are the most practical approach to identifying new genes and obtaining data on the gene expression underlying weedy characteristics. Weeds such as Canada thistle, eastern black nightshade, johnsongrass, jointed goatgrass, leafy spurge, waterhemp, and weedy rice are proposed as model systems.

Keywords

Canada thistle, Cirsium arvense (L.) Scop CIRARcommon waterhemp, Amaranthus rudis Sauer AMATAeastern black nightshade, Solanum ptycanthum Dun. SOLPTjohnsongrass, Sorghum halepense (L.) Pers SORHAjointed goatgrass, Aegilops cylindrica Host. AEGCYleafy spurge, Euphorbia esula L. EUPESred rice (weedy rice), Oryza sativa L. ORYSAtall waterhemp, Amaranthus tuberculatus (Moq.) J. D. Sauer AMATUGenomicsmodel systemsweedy characteristicsweed science
Type
Special Topics
Information
Weed Science , Volume 53 , Issue 6 , December 2005 , pp. 929 - 937
Copyright
Copyright © Weed Science Society of America 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Literature Cited

Alonso-Blanco, C., Bentsink, L., Hanhart, C. J., Vries, H. B. E., and Koornneef, M. 2003. Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana . Genetics 164:711–729.Google Scholar
Anderson, G. L., Prosser, C. W., Wendel, L. E., Delfosse, E. S., and Faust, R. M. 2003. The Ecological Areawide Management (TEAM) of leafy spurge program of the United States Department of Agriculture-Agricultural Research Service. Pest Manag. Sci 59:609–613.Google Scholar
Anderson, J. V., Chao, W. S., and Horvath, D. P. 2001. A current review on the regulation of dormancy in vegetative buds. Weed Sci 49:581–589.Google Scholar
Anderson, J. V. and Davis, D. G. 2004. Abiotic stress alters transcript profiles and activity of enzymes involved in glutathione-metabolism in Euphorbia esula . Physiol. Plant 120:421–433.Google Scholar
Anderson, J. V., Delseny, M., and Fregene, M. A. et al. 2004. An EST resource for cassava and other species of Euphorbiaceae. Plant Mol. Biol 56:527–539.Google Scholar
Anderson, J. V. and Horvath, D. P. 2001. Random sequencing of cDNAs and identification of mRNAs. Weed Sci 49:590–597.Google Scholar
Anonymous. 2004. Aegilops cylindrical jointed goatgrass—Executive Summary of the National Jointed Goatgrass Research Program CSREES-USDA Special Grant. Available at http://www.jointedgoatgrass.org/.Google Scholar
Baker, H. G. 1974. The evolution of weeds. Annu. Rev. Ecol. Syst 5:1–24.Google Scholar
Basu, C., Halfhill, M. D., Mueller, T. C., and Stewart, C. N. 2004. Weed genomics: new tools to understand weed biology. Trends Plant Sci 9:391–398.Google Scholar
Bennett, M. D. and Leitch, I. J. 2003. Plant DNA C-values database. http://www.kew.org/cval.Google Scholar
Bennett, M. D., Leitch, I. J., and Hanson, L. 1998. DNA amounts in two samples of angiosperm weeds. Ann. Bot 82:121–134.Google Scholar
Bishop, G. J. and Koncz, C. 2002. Brassinosteroids and plant steroid hormone signaling. Plant Cell 14:S97–S110.Google Scholar
Bowman, J. and Eshed, Y. 2000. Formation and maintenance of the shoot apical meristem. Trends Plant Sci 5:110–115.Google Scholar
Bres-Patry, C., Lorieux, M., Clement, G., Bangratz, M., and Ghesquiere, A. 2001. Heredity and genetic mapping of domestication-related traits in a temperate japonica weedy rice. Theor. Appl. Genet 102:118–126.Google Scholar
CAB International. 2004a. Sorghum halepense . in Crop Protection Compendium. 2004 ed. Wallingford, Great Britain: CAB International. [CD-ROM].Google Scholar
CAB International. 2004b. Euphorbia esula [original text by W. Chao and J. V. Anderson]. in Crop Protection Compendium. 2004 ed. Wallingford, Great Britain: CAB International. [CD-ROM].Google Scholar
Cai, H. W. and Morishima, H. 2000. Genomic regions affecting seed shattering and seed dormancy in rice. Theor. Appl. Genet 100:840–846.Google Scholar
Chao, W. S. 2002. Contemporary methods to investigate dormancy. Weed Sci 50:215–226.Google Scholar
Chen, L. J., Lee, D. S., Song, Z. P., Suh, H. S., and Lu, B. R. 2004. Gene flow from cultivated rice (Oryza sativa) to its weedy and wild relatives. Ann. Bot 93:67–73.Google Scholar
Chen, M. S., Presting, G., and Barbazuk, W. B. et al. 2002. An integrated physical and genetic map of the rice genome. Plant Cell 14:537–545.Google Scholar
Clark, S. E. 2001. Cell signaling at the shoot meristem. Nat. Rev. Mol. Cell Biol 2:276–284.Google Scholar
Cooper, M. R. and Johnson, A. W. 1984. Poisonous plants in Britain and their effects on animals and man. London: Her Majesty's Stationery Office. 305 p.Google Scholar
Debeaujon, I., Léon-Kloosterziel, K. M., and Koornneef, M. 2000. Influence of the testa on seed dormancy, germination, and longevity in Arabidopsis. Plant Physiol 122:403–413.Google Scholar
Debeaujon, I. and Koornneef, M. 2000. Gibberellin requirement for Arabidopsis seed germination is determined both by testa characteristics and embryonic abscisic acid. Plant Physiol 122:415–424.Google Scholar
Defelice, M. S. 2003. The black nightshades, Solanum nigrum L. et al.— poison, poultice, and pie. Weed Technol 17:421–427.Google Scholar
Diarra, A. R. J. and Talbert, R. E. 1985. Interference of red rice (Oryza sativa) with rice (O. sativa). Weed Sci 33:644–649.Google Scholar
Donald, W. W. 1994. The biology of Canada thistle (Cirsium arvense). Rev. Weed Sci 6:77–101.Google Scholar
Donald, W. W. and Ogg, A. G. Jr. 1991. Biology and control of jointed goatgrass (Aegilops cylindrica), a review. Weed Technol 5:3–17.Google Scholar
Dugas, D. V. and Bartel, B. 2004. MicroRNA regulation of gene expression in plants. Curr. Opin. Plant Biol 7:512–520.Google Scholar
Duke, S. O., Baerson, S. R., and Dayan, F. E. et al. 2003. U.S. Department of Agriculture—Agricultural Research Service research on natural products for pest management. Pest Manag. Sci 59:708–717.Google Scholar
Finkelstein, R. R., Gampala, S. S. L., and Rock, C. D. 2002. Abscisic acid signaling in seeds and seedlings. Plant Cell 14:S15–45.Google Scholar
Foley, M. E. 2002. Weeds, seeds, and buds—opportunities and systems for dormancy investigations. Weed Sci 50:267–272.Google Scholar
Footitt, S. and Cohn, M. A. 1995. Seed dormancy in red rice (Oryza sativa). IX. Embryo fructose-2,6-bisphosphate during dormancy breaking and subsequent germination. Plant Physiol 107:1365–1370.Google Scholar
Forcella, F. 2003. U.S. Department of Agriculture—Agricultural Research Service research on pest biology: weeds. Pest Manag. Sci 59:754–763.Google Scholar
Gealy, D. R., Mitten, D. H., and Rutger, J. N. 2003. Gene flow between red rice (Oryza sativa) and herbicide-resistant rice (O-sativa): implications for weed management. Weed Technol 17:627–645.Google Scholar
Gibson, S. I. 2004. Sugar and phytohormone response pathways: navigating a signaling network. J. Exp. Bot 55:253–264.Google Scholar
Goff, S. A., Ricke, D., and Lan, T-H. et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92–100.Google Scholar
Gu, X-Y., Kianian, S. F., and Foley, M. E. 2004. Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics 166:1503–1516.Google Scholar
Gu, X-Y., Kianian, S. F., and Foley, M. E. 2005. Seed dormancy imposed by covering tissues interrelates to shattering and seed morphological characteristics in weedy rice. Crop Sci 45:948–955.Google Scholar
Hartzler, R. G. 2003. Waterhemp—the perfect weed? http://www.weeds.iastate.edu/mgmt/2003/symposium.shtml. WSSA-North American Weed Management Association Invasive Plant Species Workshop, Kansas City, MO. Feb. 12–13.Google Scholar
Hartzler, R. G., Battles, B. A., and Nordby, D. 2004. Effect of common waterhemp (Amaranthus rudis) emergence date on growth and fecundity in soybean. Weed Sci 52:242–245.Google Scholar
Heap, I. 2004. The International Survey of Herbicide Resistant Weeds. http://www.weedscience.com.Google Scholar
Holm, G. L., Plucknett, D. L., Pancho, J. V., and Herburger, J. P. 1977. The World's Worst Weeds: Distribution and Biology. Honolulu, HI: Hawaii University Press.Google Scholar
Holm, L. 1969. Weed problems in developing countries. Weed Sci 17:113–118.Google Scholar
Holm, L. G., Plucknett, D. L., Pancho, J. V., and Herberger, J. P. 1991. The World's Worst Weeds: Distribution and Biology. Malabar, FL: Krieger. 609 p.Google Scholar
Horak, M. J. and Loughin, T. M. 2000. Growth analysis of four Amaranthus species. Weed Sci 48:347–355.Google Scholar
Horvath, D. P., Anderson, J. V., Chao, W. S., and Foley, M. E. 2003. Knowing when to grow: signals regulating bud dormancy. Trends Plant Sci 8:534–540.Google Scholar
Horvath, D. P. and Schaffer, R. 2003. Urg1, a conserved and previously uncharacterized gene expressed preferentially in growing shoots of Arabidopsis and leafy spurge. Appl. Genomics Proteomics 2:169–179.Google Scholar
Hu, F. Y., Tao, D. Y., and Sacks, E. et al. 2003. Convergent evolution of perenniality in rice and sorghum. Proc. Natl. Acad. Sci. USA 100:4050–4054.Google Scholar
Ishimaru, K., Yano, M., Aoki, N., Ono, K., Hirose, T., Lin, S. Y., Monna, L., Sasaki, T., and Ohsugi, R. 2001. Toward the mapping of physiological and agronomic characters on a rice function map: QTL analysis and comparison between QTLs and expressed sequence tags. Theor. Appl. Genet 102:793–800.Google Scholar
Jander, G., Baerson, S. R., Hudak, J. A., Gonzalez, K. A., Gruys, K. J., and Last, R. L. 2003. Ethylmethanesulfonate saturation mutagenesis in Arabidopsis to determine frequency of herbicide resistance. Plant Physiol 131:139–146.Google Scholar
Jeschke, M. R., Tranel, P. J., and Rayburn, A. L. 2003. DNA content analysis of smooth pigweed (Amaranthus hybridus) and tall waterhemp (A. tuberculatus): implications for hybrid detection. Weed Sci 51:1–3.Google Scholar
Jia, Y., Gu, Y-Q., Horvath, D. P., Anderson, J. V., and Chao, W. S. 2005. Subtractive hybridization as a tool for genes involved in dormancy and growth in underground adventitious buds of leafy spurge (Euphorbia esula). Annual Meeting of the Weed Science Society of America. Honolulu, HI. Feb. 7–10.Google Scholar
Jordon-Thaden, I. E. and Louda, S. M. 2003. Chemistry of Cirsium and Carduus: a role in ecological risk assessment for biological control of weeds? Biochem. Syst. Ecol 31:1353–1396.Google Scholar
Koornneef, M., Bentsink, L., and Hilhorst, H. 2002. Seed dormancy and germination. Curr. Opin. Plant Biol 5:33–36.Google Scholar
Lampe, K. F. and McCann, M. A. 1985. AMA Handbook of Poisonous and Injurious Plants. Chicago: American Medical Association. 432 p.Google Scholar
Leguizamon, E. S. 1986. Seed survival and patterns of seedling emergence in Sorghum halepense (L.) Pers. Weed Res 26:397–403.Google Scholar
Leon, P. and Sheen, J. 2003. Sugar and hormone connections. Trends Plant Sci 8:110–116.Google Scholar
Leon, R. G. and Owen, M. D. K. 2003. Regulation of weed seed dormancy through light and temperature interactions. Weed Sci 51:752–758.Google Scholar
Leopold, A. C., Glenister, R., and Cohn, M. A. 1988. Relationship between water content and afterripening in red rice. Physiol. Plant 74:659–662.Google Scholar
Louda, S. M., Kendall, D., Connor, J., and Simberloff, D. 1997. Ecological effects of an insect introduced for the biological control of weeds. Science 277:1088–1090.Google Scholar
Lym, R. G., Nissen, S. J., Rowe, M. L., Lee, D. J., and Masters, R. A. 1996. Leafy spurge (Euphorbia esula) genotype affects gall midge (Spurgia esulae) establishment. Weed Sci 44:629–633.Google Scholar
Madsen, S. B. 1962. Germination of buried and dry stored seeds III, 1934– 1960. Proc. Int. Seed Testing Assoc 27:920–928.Google Scholar
Meyerowitz, E. M. 2001. Prehistory and history of Arabidopsis research. Plant Physiol 125:15–19.Google Scholar
Meyerowitz, E. M. and Pruitt, R. E. 1985. Arabidopsis thaliana and plant molecular genetics. Science 229:1214–1218.Google Scholar
Meyers, B. C., Galbraith, D. W., Nelson, T., and Agrawal, V. 2004. Methods for transcriptional profiling in plants. Be fruitful and replicate. Plant Physiol 135:637–652.Google Scholar
Minorsky, P. V. 2003. Achieving the in silico plant. Systems biology and the future of plant biological research. Plant Physiol 132:404–409.Google Scholar
Monaghan, N. 1979. The biology of johnsongrass (Sorghum halepense). Weed Res 19:261–267.Google Scholar
Moore, R. J. 1975. The biology of Canadian weeds. 13. Cirsium arvense (L.) Scop. Can. J. Plant Sci 55:1033–1048.Google Scholar
Nishimura, C. C., Ohashi, Y., Sato, S., Kato, T., Tabata, S., and Ueguchia, C. 2004. Histidine kinase homologs that act as cytokinin receptors possess overlapping functions in the regulation of shoot and root growth in Arabidopsis. Plant Cell 16:1365–1377.Google Scholar
Nordby, D. E. and Hartzler, R. G. 2004. Influence of corn on common waterhemp (Amaranthus rudis) growth and fecundity. Weed Sci 52:255–259.Google Scholar
Ogg, A. G., Rogers, B. S., and Schilling, E. E. 1981. Characterization of black nightshade (Solanum nigrum) and related species in the United States. Weed Sci 29:27–32.Google Scholar
Paterson, A. H., Schertz, K. F., Lin, Y-R., Liu, S-C., and Chang, Y-L. 1995. The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) Pers. Proc. Natl. Acad. Sci. USA 92:6127–6131.Google Scholar
Pratt, D. B. and Clark, L. G. 2001. Amaranthus rudis and A. tuberculatus— one species or two? J. Torrey Bot. Soc 128:282–296.Google Scholar
Rensink, W. A. and Buell, C. R. 2004. Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species. Plant Physiol 135:622–629.Google Scholar
Richards, D. E., King, K. E., Ait-ali, T., and Harberd, N. P. 2001. How gibberellin regulates plant growth and development: a molecular genetic analysis of gibberellin signaling. Annu. Rev. Plant Physiol. Plant Mol. Biol 52:67–88.Google Scholar
Roux, F., Gasquez, J., and Reboud, X. 2004. The dominance of the herbicide resistance cost in several Arabidopsis thaliana mutant lines. Genetics 166:449–460.Google Scholar
Sauer, J. D. 1955. Revision of the dioecious amaranths. Madroño 13:5–46.Google Scholar
Schulz-Schaeffer, J. and Gerhardt, S. 1987. Cytotaxonomic analysis of the Euphorbia spp. (“leafy spurge”) complex. Biol. Zentbl 106:429–438.Google Scholar
Schulz-Schaeffer, J. and Gerhardt, S. 1989. Cytotaxonomic analysis of the Euphorbia spp. (“leafy spurge”) complex. II. Comparative study of the chromosome morphology. Biol. Zentbl 108:69–76.Google Scholar
Seefeldt, S. S., Zemetra, R., Young, F. L., and Jones, S. S. 1998. Production of herbicide-resistant jointed goatgrass (Aegilops cylindrica) × wheat (Triticum aestivum) hybrids in the field by natural hybridization. Weed Sci 46:632–634.Google Scholar
Seibert, A. C. and Pearce, R. B. 1993. Growth analysis of weed and crop species with reference to seed weight. Weed Sci 41:52–56.Google Scholar
Skinner, D. L., Paterson, A. H., Vencill, W. K., and Ma, H. 2003. Cloning and characterization of rhizome-specific genes. Poster 443, Plant and Animal Genomes XI conference. January 11–15, 2003. Town & Country Convention Center, San Diego, CA. http://www.intl-pag.org/11/abstracts/P5d_P443_XI.html.Google Scholar
Skinner, K., Smith, L., and Rice, P. 2000. Using noxious weed lists to prioritize targets for developing weed management strategies. Weed. Sci 48:640–644.Google Scholar
Steber, C. M. and McCourt, P. 2001. A role for brassinosteroids in germination in Arabidopsis. Plant Physiol 125:763–769.Google Scholar
Temnykh, S., DeClerck, G., Lukashova, A., Lipovich, L., Cartinhour, S., and McCouch, S. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441–1452.Google Scholar
Turner, J. G., Ellis, C., and Devoto, A. 2002. The jasmonate signal pathway. Plant Cell 14:S153–164.Google Scholar
Wang, K. L-C., Li, H., and Ecker, J. R. 2002. Ethylene biosynthesis and signaling networks. Plant Cell 14:S131–151.Google Scholar
Weinig, C., Stinchcombe, J. R., and Schmitt, J. 2003. Evolutionary genetics of resistance and tolerance to natural herbivory in Arabidopsis thaliana . Evol. Int. J. Org. Evol 57:1270–1280.Google Scholar
Westbrooks, R. L. 1998. Invasive plants, changing the landscape of America: fact Book. Federal Interagency Committee for the Management of Noxious and Exotic Weeds (FICMNEW). Washington, D.C. Pp. 4–5, 16–17.Google Scholar
Wu, J. Z., Maehara, T., and Shimokawa, T. et al. 2002. A comprehensive rice transcript map containing 6591 expressed sequence tag sites. Plant Cell 14:525–535.Google Scholar
Yu, J., Hu, S. N., and Wang, J. et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79–92.Google Scholar
Zemetra, R. S., Hansen, J., and Mallory-Smith, C. A. 1998. Potential for gene transfer between wheat (Triticum aestivum) and jointed goatgrass (Aegilops cylindrica). Weed Sci 46:313–317.Google Scholar