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APPLICATIONS OF THREE-DIMENSIONAL BOX MODELING TO PALEONTOLOGICAL FUNCTIONAL ANALYSIS

Published online by Cambridge University Press:  27 April 2017

Imran A. Rahman
Affiliation:
Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK 〈[email protected]
Stephan Lautenschlager
Affiliation:
School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgebaston Birmingham, B15 2TT, UK 〈[email protected]
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Abstract

Functional analysis through computer modeling can inform on how extinct organisms moved and fed, allowing us to test long-standing paleobiological hypotheses. Many such studies are based on digital models derived from computed tomography or surface scanning, but these methods are not appropriate for all fossils. Here, we show that box modeling—3-D modeling of complex shapes based on simple objects—can be used to reconstruct the morphology of various fossil specimens. Moreover, the results of computational functional analyses utilizing such models are very similar to those for models derived from tomographic or surface-based techniques. Box modeling is more broadly applicable than alternative methods for digitizing specimens; hence, there is great potential for this approach in paleontological functional analysis. Possible applications include large-scale comparative studies, analyses of hypothetical morphologies, and virtually restoring incomplete/distorted specimens.

Type
Research Article
Copyright
Copyright © 2017, The Paleontological Society 

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References

Anderson, P.S.L., Bright, J.A., Gill, P.G., Palmer, C., and Rayfield, E.J., 2011a, Models in palaeontological functional analysis: Biology Letters, v. 8, p. 119122, DOI: 10.1098/rsbl.2011.0674.CrossRefGoogle ScholarPubMed
Anderson, P.S.L., Gill, P.G., and Rayfield, E.J., 2011b, Modeling the effects of cingula structure on strain patterns and potential fracture in tooth enamel: Journal of Morphology, v. 272, p. 5065, DOI: 10.1002/jmor.10896.Google Scholar
Bates, K.T., Manning, P.L., Hodgetts, D., and Sellers, W.I., 2009, Estimating mass properties of dinosaurs using laser imaging and 3D computer modelling: PLoS ONE, v. 4, no. 2, art. e4532, DOI: 10.1371/journal.pone.0004532.CrossRefGoogle ScholarPubMed
Bates, K.T., Manning, P.L., Vila, B., and Hodgetts, D., 2008, Three-dimensional modelling and analysis of dinosaur trackways: Palaeontology, v. 51, p. 9991010, DOI: 10.1111/j.1475-4983.2008.00789.x.Google Scholar
Brassey, C.A., Maidment, S.C.R., and Barrett, P.M., 2015, Body mass estimates of an exceptionally complete Stegosaurus (Ornithischia: Thyreophora): Comparing volumetric and linear bivariate mass estimation methods: Biology Letters, v. 11, no. 3, art. 20140984, DOI: 10.1098/rsbl.2014.0984.CrossRefGoogle ScholarPubMed
Breithaupt, B.H., Matthews, N.A., and Noble, T.A., 2004, An integrated approach to three-dimensional data collection at dinosaur tracksites in the Rocky Mountain West: Ichnos, v. 11, nos. 1–2, p. 1126, DOI: 10.1080/10420940490442296.Google Scholar
Cunningham, J.A., Rahman, I.A., Lautenschlager, S., Rayfield, E.J., and Donoghue, P.C.J., 2014, A virtual world of paleontology: Trends in Ecology & Evolution, v. 29, p. 347357, DOI: 10.1016/j.tree.2014.04.004.Google Scholar
Cunningham, J.A., Thomas, C.-W., Bengtson, S., Kearns, S.L., Xiao, S., Marone, F., Stampanoni, M., and Donoghue, P.C.J., 2012, Distinguishing geology from biology in the Ediacaran Doushantuo biota relaxes constraints on the timing of the origin of bilaterians: Proceedings of the Royal Society B, Biological Sciences, v. 279, p. 23692376, DOI: 10.1098/rspb.2011.2280.Google Scholar
Falkingham, P.L., 2012, Acquisition of high resolution three-dimensional models using free, open-source, photogrammetric software: Palaeontologia Electronica, v. 15, no. 1, art. 1T, http://palaeo-electronica.org/content/issue1-2012technical-articles/92-3d-photogrammetry.Google Scholar
Garwood, R.J., and Dunlop, J.A., 2011, Morphology and systematics of Anthracomartidae (Arachnida: Trigonotarbida): Palaeontology, v. 54, p. 145161, DOI: 10.1111/j.1475-4983.2010.01000.x.Google Scholar
Garwood, R.J., and Dunlop, J.A., 2014, The walking dead: Blender as a tool for paleontologists with a case study on extinct arachnids: Journal of Paleontology, v. 88, p. 735746, DOI: 10.1666/13-088.CrossRefGoogle Scholar
Gil, L., Marcé-Nogué, J., and Sánchez, M., 2015, Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrates: Palaeontologia Electronica, v. 18, no. 1, art. 10A, http://palaeo-electronica.org/content/2015/1095-controversy-in-materials-data.Google Scholar
Giles, S., Coates, M.I., Garwood, R.J., Brazeau, M.D., Atwood, R., Johanson, Z., and M. Friedman, M., 2015, Endoskeletal structure in Cheirolepis (Osteichthyes, Actinopterygii), an early ray-finned fish: Palaeontology, v. 58, no. 5, p. 849870, DOI: 10.1111/pala.12182.CrossRefGoogle ScholarPubMed
Gunz, P., Mitteroecker, P., Neubauer, S., Weber, G.W., and Bookstein, F. L., 2009, Principles for the virtual reconstruction of hominin crania: Journal of Human Evolution, v. 57, p. 4862, DOI: 10.1016/j.jhevol.2009.04.004.CrossRefGoogle ScholarPubMed
Haug, C., Briggs, D.E.G., Mikulic, D.G., Kluessendorf, J., and Haug, J.T., 2014, The implications of a Silurian and other thylacocephalan crustaceans for the functional morphology and systematic affinities of the group: BMC Evolutionary Biology, v. 14, art. 159, DOI: 10.1186/s12862-014-0159-2.CrossRefGoogle ScholarPubMed
Haug, J.T., Maas, A., Haug, C., and Walosek, D., 2011, Sarotrocercus oblitus—Small arthropod with great impact on the understanding of arthropod evolution?: Bulletin of Geosciences, v. 86, p. 725736.CrossRefGoogle Scholar
Hess, R., 2010, Blender Foundations: The Essential Guide to Learning Blender 2.6: Amsterdam, The Netherlands, Focal Press, 404 p.Google Scholar
Lautenschlager, S., 2014, Morphological and functional diversity in therizinosaur claws and the implications for theropod claw evolution: Proceedings of the Royal Society B, Biological Sciences, v. 281, art. 20140497, DOI: 10.1098/rspb.2014.0497.CrossRefGoogle ScholarPubMed
Lautenschlager, S., 2015, Estimating cranial musculoskeletal constraints in theropod dinosaurs: Royal Society Open Science, v. 2, art. 150495, DOI: 10.1098/rsos.150495.Google Scholar
Lautenschlager, S., 2017, Digital reconstruction of soft-tissue structures in fossils: Paleontological Society Papers, v. 22, p. 101117.Google Scholar
Lautenschlager, S., Rayfield, E.J., Altangerel, P., Zanno, L.E., and Witmer, L.M., 2012, The endocranial anatomy of Therizinosauria and its implications for sensory and cognitive function: PLoS ONE, v. 7, no. 12, art. e52289, DOI: 10.1371/journal.pone.0052289.Google Scholar
Lautenschlager, S., Witmer, L.M., Altangerel, P., and Rayfield, E.J., 2013, Edentulism, beaks, and biomechanical innovations in the evolution of theropod dinosaurs: Proceedings of the National Academy of Sciences of the United States of America, v. 110, p. 2065720662, DOI: 10.1073/pnas.1310711110.Google Scholar
Lida, X., Wang, Y., Snively, E., Zhang, J., Dong, Z., Burns, M.E., and Currie, P.J., 2015, Model-based identification of mechanical characteristics of Sinosaurus (Theropoda) crests: Acta Geologica Sinica, v. 89, p. 111, DOI: 10.1111/1755-6724.12390.CrossRefGoogle Scholar
Limaye, A., 2012, Drishti: A volume exploration and presentation tool, 85060X, in Stock, S.R., ed., Developments in X-Ray Tomography VIII, Proceedings of SPIE, San Diego, California: Bellingham, Washington, SPIE (Society of Photographic Instrumentation Engineers), p. 8506.CrossRefGoogle Scholar
Madsen, J.H., 1976, Allosaurus fragilis: A revised osteology: Utah Geological and Mineralogical Survey Bulletin, v. 109, p. 1163.Google Scholar
Maidment, S.C.R., Brassey, C., and Barrett, P.M., 2015, The postcranial skeleton of an exceptionally complete individual of the plated dinosaur Stegosaurus stenops (Dinosauria: Thyreophora) from the Upper Jurassic Morrison Formation of Wyoming, USA: PLoS ONE, v. 10, no. 10, art. e0138352, DOI: 10.1371/journal.pone.0138352.CrossRefGoogle Scholar
Mallison, H., and Wings, O., 2014, Photogrammetry in paleontology—A practical guide: Journal of Paleontological Techniques, v. 12, p. 131.Google Scholar
Marsh, O.C., 1877, Notice of new dinosaurian reptiles from the Jurassic formation: American Journal of Science and Arts, v. 14, p. 514516, DOI: 10.2475/ajs.s3-14.84.514.CrossRefGoogle Scholar
Marsh, O.C., 1887, Principal characters of American Jurassic dinosaurs, part IX: The skull and dermal armour of Stegosaurus : American Journal of Science, v. 3, no. 34, p. 413417.CrossRefGoogle Scholar
Porro, L.B., Rayfield, E.J., and Clack, J.A., 2015, Descriptive anatomy and three-dimensional reconstruction of the skull of the early tetrapod Acanthostega gunnari Jarvik, 1952: PLoS ONE, v. 10, no. 4, art. e0124731, DOI: 10.1371/journal.pone.0124731.Google Scholar
Rahman, I.A., and Zamora, S., 2009, The oldest cinctan carpoid (stem-group Echinodermata), and the evolution of the water vascular system: Zoological Journal of the Linnean Society, v. 157, p. 420432, DOI: 10.1111/j.1096-3642.2008.00517.x.Google Scholar
Rahman, I.A., Belaústegui, Z., Zamora, S., Nebelsick, J.H., Domènech, R., and Martinell, J., 2015a, Miocene Clypeaster from Valencia (E Spain): Insights into the taphonomy and ichnology of bioeroded echinoids using X-ray micro-tomography: Palaeogeography, Palaeoclimatology, Palaeoecology, v. 438, p. 168179, DOI: 10.1016/j.palaeo.2015.07.021.CrossRefGoogle Scholar
Rahman, I.A., Waters, J.A., Sumrall, C.D., and Astolfo, A., 2015b, Early post-metamorphic, Carboniferous blastoid reveals the evolution and development of the digestive system in echinoderms: Biology Letters, v. 11, no. 10, art. 20150776, DOI: 10.1098/rsbl.2015.0776.Google Scholar
Rahman, I.A., Zamora, S., Falkingham, P.L., and Phillips, J.C., 2015c, Cambrian cinctan echinoderms shed light on feeding in the ancestral deuterostome: Proceedings of the Royal Society of London B, Biological Sciences, v. 282, art. 20151964, DOI: 10.1098/rspb.2015.1964.Google Scholar
Rayfield, E.J., 2005, Using finite-element analysis to investigate suture morphology: A case study using large carnivorous dinosaurs: The Anatomical Record A, Discoveries in Molecular, Cellular, and Evolutionary Biology, v. 283, p. 349365, DOI: 10.1002/ar.a.20168.CrossRefGoogle ScholarPubMed
Rayfield, E.J., 2007, Finite element analysis and understanding the biomechanics and evolution of living and fossil organisms: Annual Review of Earth and Planetary Sciences, v. 35, p. 541576, DOI: 10.1146/annurev.earth.35.031306.140104.Google Scholar
Rayfield, E.J., and Milner, A.C., 2008, Establishing a framework for archosaur cranial mechanics: Paleobiology, v. 34, p. 494515, DOI: 10.1666/07006.1.Google Scholar
Rayfield, E.J., Norman, D.B., Horner, C.C., Horner, J.R., Smith, P.M., Thomason, J.J., and Upchurch, P., 2001, Cranial design and function in a large theropod dinosaur: Nature, v. 409, p. 10331037, DOI: 10.1038/35059070.Google Scholar
Rücklin, M., Donoghue, P.C.J., Johanson, Z., Trinajstic, K., Marone, F., and Stampanoni, M., 2012, Development of teeth and jaws in the earliest jawed vertebrates: Nature, v. 491, p. 748751, DOI: 10.1038/nature11555.CrossRefGoogle ScholarPubMed
Schmidt, D.N., Rayfield, E.J., Cocking, A., and Marone, F., 2013, Linking evolution and development: Synchrotron radiation X-ray tomographic microscopy of planktic foraminifers: Palaeontology, v. 56, p. 741749, DOI: 10.1111/pala.12013.Google Scholar
Shiino, Y., Kuwazuru, O., Suzuki, Y., and Ono, S., 2012, Swimming capability of the remopleuridid trilobite Hypodicranotus striatus: Hydrodynamic functions of the exoskeleton and the long, forked hypostome: Journal of Theoretical Biology, v. 300, p. 2938, DOI: 10.1016/j.jtbi.2012.01.012.Google Scholar
Smith, J.B., Lamanna, M.C., Mayr, H., and Lacovara, K.J., 2006, New information regarding the holotype of Spinosaurus aegyptiacus Stromer, 1915: Journal of Paleontology, v. 80, p. 400406, DOI: 10.1666/0022-3360(2006)080[0400:NIRTHO]2.0.CO;2.Google Scholar
Smith, S.Y., Collinson, M.E., Rudall, P.J., Simpson, D.A., Marone, F., and Stampanoni, M., 2009, Virtual taphonomy using synchrotron tomographic microscopy reveals cryptic features and internal structure of modern and fossil plants: Proceedings of the National Academy of Sciences of the United States of America, v. 106 p. 1201312018, DOI: 10.1073/pnas.0901468106.Google ScholarPubMed
Stein, M., 2010, A new arthropod from the early Cambrian of North Greenland, with a ‘great appendage’-like antennula: Zoological Journal of the Linnean Society, v. 158, p. 477500, DOI: 10.1111/j.1096-3642.2009.00562.x.Google Scholar
Sutton, M.D., Garwood, R. J., Siveter, David J., and Siveter, Derek J., 2012, SPIERS and VAXML: A software toolkit for tomographic visualisation and a format for virtual specimen interchange: Palaeontologia Electronica, v. 15, no. 2, p. 114, http://palaeo-electronica.org/content/issue-2-2012-technical-articles/226-virtual-palaeontology-toolkit.Google Scholar
Sutton, M.D., Rahman, I.A., and Garwood, R.J., 2014, Techniques for Virtual Palaeontology: Oxford, UK, Wiley, 208 p.Google Scholar
Sutton, M.D., Rahman, I. A., and Garwood, R. J., 2017, Virtual paleontology—An overview: Paleontological: Society Papers, v. 22, p. 1–20.Google Scholar
Witmer, L.M., Chatterjee, S., Franzosa, J., and Rowe, T., 2003, Neuroanatomy of flying reptiles and implications for flight, posture and behaviour: Nature, v. 425, p. 950953, DOI: 10.1038/nature02048.Google Scholar
Wu, C., 2013, Towards linear-time incremental structure from motion, in Proceedings of the 2013 International Conference on 3D Vision, Seattle, Washington: Los Alamitos, California, IEEE Computer Society, p. 127–134, DOI: 10.1109/3DV.2013.25.Google Scholar
Zapata, U, Metzger, K., Wang, Q., Elsey, R.M., Ross, C.F., and Dechow, P.C., 2010, Material properties of mandibular cortical bone in the American alligator, Alligator mississippiensis : Bone, v. 46, p. 860867, DOI: 10.1016/j.bone.2009.11.010.Google Scholar
Zelenitsky, D.K., Therrien, F., and Kobayashi, Y., 2009, Olfactory acuity in theropods: Palaeobiological and evolutionary implications: Proceedings of the Royal Society of London B, Biological Sciences, v. 276, p. 667673, DOI: 10.1098/rspb.2008.1075.Google Scholar