Hostname: page-component-cd9895bd7-jkksz Total loading time: 0 Render date: 2024-12-24T17:25:54.695Z Has data issue: false hasContentIssue false

A fluorescence-based assay for 3′ → 5′ exoribonucleases: Potential applications to the study of mRNA decay

Published online by Cambridge University Press:  01 March 2000

GERALD M. WILSON
Affiliation:
Department of Molecular Genetics and Microbiology, University of Medicine and Dentistry of New Jersey, Piscataway, New Jersey 08854, USA
HAIPING LU
Affiliation:
Department of Microbiology and Immunology, Wake Forest University School of Medicine, Winston-Salem, North Carolina 27157, USA
YUE SUN
Affiliation:
Department of Microbiology and Immunology, Wake Forest University School of Medicine, Winston-Salem, North Carolina 27157, USA
AMANDA KENNEDY
Affiliation:
Department of Microbiology and Immunology, Wake Forest University School of Medicine, Winston-Salem, North Carolina 27157, USA
GARY BREWER
Affiliation:
Department of Molecular Genetics and Microbiology, University of Medicine and Dentistry of New Jersey, Piscataway, New Jersey 08854, USA
Get access

Abstract

A cell-free mRNA decay assay has been adapted to permit the kinetics of 3′ → 5′ exoribonuclease activities to be monitored in real time. RNA probes containing 5′ caps and 3′ poly(A) tails generated by transcription in vitro are 3′ labeled using fluorescein-N6-ATP and poly(A) polymerase. Release of fluorescein-conjugated adenosine residues from the 3′ end of the RNA substrate is monitored by a time-dependent decrease in fluorescence anisotropy in the presence of cytosolic proteins. To demonstrate the utility of the assay, an RNA probe was constructed containing a fragment of the c-myc 3′ untranslated region and an 85-base poly(A) tail. Following 3′ fluorescein labeling, the rate of 3′-terminal adenosine excision was monitored in the presence of an S100 cytosolic extract prepared from K562 erythroleukemia cells. Removal of the fluorescein-tagged A residues resolved to a first-order decay function, allowing the rate constant and enzyme-specific activity to be determined in this extract. Further applications and advantages of this technology are discussed.

Type
METHOD
Copyright
2000 RNA Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)