Hostname: page-component-586b7cd67f-2brh9 Total loading time: 0 Render date: 2024-11-23T01:29:52.261Z Has data issue: false hasContentIssue false

Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization

Published online by Cambridge University Press:  11 January 2002

LUKE D. SHERLIN
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
TIMOTHY L. BULLOCK
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
T. AMAR NISSAN
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
JOHN J. PERONA
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
FREDERICK J. LARIVIERE
Affiliation:
Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, USA
OLKE C. UHLENBECK
Affiliation:
Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, USA
STEPHEN A. SCARINGE
Affiliation:
Dharmacon Research, Incorporated, Boulder, Colorado 80301, USA
Get access

Abstract

Preparation of large quantities of RNA molecules of a defined sequence is a prerequisite for biophysical analysis, and is particularly important to the determination of high-resolution structure by X-ray crystallography. We describe improved methods for the production of multimilligram quantities of homogeneous tRNAs, using a combination of chemical synthesis and enzymatic approaches. Transfer RNA half-molecules with a break in the anticodon loop were chemically synthesized on a preparative scale, ligated enzymatically, and cocrystallized with an aminoacyl-tRNA synthetase, yielding crystals diffracting to 2.4 Å resolution. Multimilligram quantities of tRNAs with greatly reduced 3′ heterogeneity were also produced via transcription by T7 RNA polymerase, utilizing chemically modified DNA half-molecule templates. This latter approach eliminates the need for large-scale plasmid preparations, and yields synthetase cocrystals diffracting to 2.3 Å resolution at much lower RNA:protein stoichiometries than previously required. These two approaches developed for a tRNA–synthetase complex permit the detailed structural study of “atomic-group” mutants.

Type
METHOD
Information
RNA , Volume 7 , Issue 11 , November 2001 , pp. 1671 - 1678
Copyright
© 2001 RNA Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)