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Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization

Published online by Cambridge University Press:  11 January 2002

LUKE D. SHERLIN
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
TIMOTHY L. BULLOCK
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
T. AMAR NISSAN
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
JOHN J. PERONA
Affiliation:
Department of Chemistry and Biochemistry, and Interdepartmental Program in Biomolecular Science & Engineering, University of California at Santa Barbara, Santa Barbara, California 93106-9510, USA
FREDERICK J. LARIVIERE
Affiliation:
Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, USA
OLKE C. UHLENBECK
Affiliation:
Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, USA
STEPHEN A. SCARINGE
Affiliation:
Dharmacon Research, Incorporated, Boulder, Colorado 80301, USA
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Abstract

Preparation of large quantities of RNA molecules of a defined sequence is a prerequisite for biophysical analysis, and is particularly important to the determination of high-resolution structure by X-ray crystallography. We describe improved methods for the production of multimilligram quantities of homogeneous tRNAs, using a combination of chemical synthesis and enzymatic approaches. Transfer RNA half-molecules with a break in the anticodon loop were chemically synthesized on a preparative scale, ligated enzymatically, and cocrystallized with an aminoacyl-tRNA synthetase, yielding crystals diffracting to 2.4 Å resolution. Multimilligram quantities of tRNAs with greatly reduced 3′ heterogeneity were also produced via transcription by T7 RNA polymerase, utilizing chemically modified DNA half-molecule templates. This latter approach eliminates the need for large-scale plasmid preparations, and yields synthetase cocrystals diffracting to 2.3 Å resolution at much lower RNA:protein stoichiometries than previously required. These two approaches developed for a tRNA–synthetase complex permit the detailed structural study of “atomic-group” mutants.

Type
METHOD
Information
RNA , Volume 7 , Issue 11 , November 2001 , pp. 1671 - 1678
Copyright
© 2001 RNA Society

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