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Hierarchical assembly of the Alu domain of the mammalian signal recognition particle

Published online by Cambridge University Press:  04 May 2001

OLIVER WEICHENRIEDER
Affiliation:
European Molecular Biology Laboratory, Grenoble Outstation, F-38042 Grenoble Cedex 9, France Present address: The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
CATHERINE STEHLIN
Affiliation:
European Molecular Biology Laboratory, Grenoble Outstation, F-38042 Grenoble Cedex 9, France
ULRIKE KAPP
Affiliation:
European Molecular Biology Laboratory, Grenoble Outstation, F-38042 Grenoble Cedex 9, France
DARCY E. BIRSE
Affiliation:
European Molecular Biology Laboratory, Grenoble Outstation, F-38042 Grenoble Cedex 9, France
PETER A. TIMMINS
Affiliation:
Institute Laue-Langevin, F-38042 Grenoble Cedex 9, France
KATHARINA STRUB
Affiliation:
Département de Biologie Cellulaire, Université de Genève, Sciences III, CH-1211, Geneva 4, Switzerland
STEPHEN CUSACK
Affiliation:
European Molecular Biology Laboratory, Grenoble Outstation, F-38042 Grenoble Cedex 9, France
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Abstract

The mammalian signal recognition particle (SRP) catalytically promotes cotranslational translocation of signal sequence containing proteins across the endoplasmic reticulum membrane. While the S-domain of SRP binds the N-terminal signal sequence on the nascent polypeptide, the Alu domain of SRP temporarily interferes with the ribosomal elongation cycle until the translocation pore in the membrane is correctly engaged. Here we present biochemical and biophysical evidence for a hierarchical assembly pathway of the SRP Alu domain. The proteins SRP9 and SRP14 first heterodimerize and then initially bind to the Alu RNA 5′ domain. This creates the binding site for the Alu RNA 3′ domain. Alu RNA then undergoes a large conformational change with the flexibly linked 3′ domain folding back by 180° onto the 5′ domain complex to form the final compact Alu ribonucleoprotein particle (Alu RNP). We discuss the possible mechanistic consequences of the likely reversibility of this final step with reference to translational regulation by the SRP Alu domain and with reference to the structurally similar Alu RNP retroposition intermediates derived from Alu elements in genomic DNA.

Type
Research Article
Copyright
2001 RNA Society

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