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Elongation factor G-induced structural change in helix 34 of 16S rRNA related to translocation on the ribosome

Published online by Cambridge University Press:  11 January 2002

NATALIA B. MATASSOVA
Affiliation:
Institute of Molecular Biology, University of Witten/Herdecke, D-58448 Witten, Germany Present address: RiboTargets, Granta Park, Abingdon, Cambridge CB16GB, United Kingdom.
MARINA V. RODNINA
Affiliation:
Institute of Physical Biochemistry, University of Witten/Herdecke, D-58448 Witten, Germany
WOLFGANG WINTERMEYER
Affiliation:
Institute of Molecular Biology, University of Witten/Herdecke, D-58448 Witten, Germany
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Abstract

During the translocation step of the elongation cycle, two tRNAs together with the mRNA move synchronously and rapidly on the ribosome. The movement is catalyzed by the binding of elongation factor G (EF-G) and driven by GTP hydrolysis. Here we study structural changes of the ribosome related to EF-G binding and translocation by monitoring the accessibility of ribosomal RNA (rRNA) for chemical modification by dimethyl sulfate or cleavage by hydroxyl radicals generated by Fe(II)-EDTA. In the state of the ribosome that is formed upon binding of EF-G but before the movement of the tRNAs takes place, residues 1054, 1196, and 1201 in helix 34 in 16S rRNA are strongly protected. The protections depend on EF-G binding, but do not require GTP hydrolysis, and are lost upon translocation. Mutants of EF-G, which are active in ribosome binding and GTP hydrolysis but impaired in translocation, do not bring about the protections. According to cryo-electron microscopy (Stark et al., Cell, 2000, 100:301–309), there is no contact of EF-G with the protected residues of helix 34 in the pretranslocation state, suggesting that the observed protections are due to an induced conformational change. Thus, the present results indicate that EF-G binding to the pretranslocation ribosome induces a structural change of the head of the 30S subunit that is essential for subsequent tRNA-mRNA movement in translocation.

Type
Research Article
Information
RNA , Volume 7 , Issue 12 , December 2001 , pp. 1879 - 1885
Copyright
2001 RNA Society

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