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Distinct roles for RDE-1 and RDE-4 during RNA interference in Caenorhabditis elegans

Published online by Cambridge University Press:  11 January 2002

SUSAN PARRISH
Affiliation:
Department of Embryology, Carnegie Institution of Washington, Baltimore, Maryland 21210, USA Biology Graduate Program, Johns Hopkins University, Baltimore, Maryland 21218, USA
ANDREW FIRE
Affiliation:
Department of Embryology, Carnegie Institution of Washington, Baltimore, Maryland 21210, USA
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Abstract

RNA interference (RNAi) is a cellular defense mechanism that uses double-stranded RNA (dsRNA) as a sequence-specific trigger to guide the degradation of homologous single-stranded RNAs. RNAi is a multistep process involving several proteins and at least one type of RNA intermediate, a population of small 21–25 nt RNAs (called siRNAs) that are initially derived from cleavage of the dsRNA trigger. Genetic screens in Caenorhabditis elegans have identified numerous mutations that cause partial or complete loss of RNAi. In this work, we analyzed cleavage of injected dsRNA to produce the initial siRNA population in animals mutant for rde-1 and rde-4, two genes that are essential for RNAi but that are not required for organismal viability or fertility. Our results suggest distinct roles for RDE-1 and RDE-4 in the interference process. Although null mutants lacking rde-1 show no phenotypic response to dsRNA, the amount of siRNAs generated from an injected dsRNA trigger was comparable to that of wild-type. By contrast, mutations in rde-4 substantially reduced the population of siRNAs derived from an injected dsRNA trigger. Injection of chemically synthesized 24- or 25-nt siRNAs could circumvent RNAi resistance in rde-4 mutants, whereas no bypass was observed in rde-1 mutants. These results support a model in which RDE-4 is involved before or during production of siRNAs, whereas RDE-1 acts after the siRNAs have been formed.

Type
Research Article
Information
RNA , Volume 7 , Issue 10 , October 2001 , pp. 1397 - 1402
Copyright
2001 RNA Society

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