Hostname: page-component-586b7cd67f-r5fsc Total loading time: 0 Render date: 2024-11-26T23:50:30.967Z Has data issue: false hasContentIssue false

Topology and dynamics of the 10 kDa C-terminal domain of DnaK in solution

Published online by Cambridge University Press:  01 February 1999

ERIC B. BERTELSEN
Affiliation:
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403
HONGJUN ZHOU
Affiliation:
Macromolecular NMR Section, ABL-Basic Research Program, NCI-Frederick Cancer Research and Development Center, Frederick, Maryland 21702
DAVID F. LOWRY
Affiliation:
Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352
GREGORY C. FLYNN
Affiliation:
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403
FREDERICK W. DAHLQUIST
Affiliation:
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403
Get access

Abstract

Hsp70 molecular chaperones contain three distinct structural domains, a 44 kDa N-terminal ATPase domain, a 17 kDa peptide-binding domain, and a 10 kDa C-terminal domain. The ATPase and peptide binding domains are conserved in sequence and are functionally well characterized. The function of the 10 kDa variable C-terminal domain is less well understood. We have characterized the secondary structure and dynamics of the C-terminal domain from the Escherichia coli Hsp70, DnaK, in solution by high-resolution NMR. The domain was shown to be comprised of a rigid structure consisting of four helices and a flexible C-terminal subdomain of approximately 33 amino acids. The mobility of the flexible region is maintained in the context of the full-length protein and does not appear to be modulated by the nucleotide state. The flexibility of this region appears to be a conserved feature of Hsp70 architecture and may have important functional implications. We also developed a method to analyze 15N nuclear spin relaxation data, which allows us to extract amide bond vector directions relative to a unique diffusion axis. The extracted angles and rotational correlation times indicate that the helices form an elongated, bundle-like structure in solution.

Type
Research Article
Copyright
© 1999 The Protein Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)