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Actin surface structure revealed by antibody imprints: Evaluation of phage-display analysis of anti-actin antibodies

Published online by Cambridge University Press:  01 April 1999

ALGIRDAS J. JESAITIS
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
DAWIT GIZACHEW
Affiliation:
Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717-3520
EDWARD A. DRATZ
Affiliation:
Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717-3520
DANIEL W. SIEMSEN
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
KIM CLAWSON STONE
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
JAMES B. BURRITT
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3520
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Abstract

Phage-display peptide library analysis of an anti-F actin polyclonal antibody identified 12 amino acid residues of actin that appear, in its X-ray crystal structure, to be grouped together in a surface accessible conformational epitope. Phage epitope mapping was carried out by isolating immune complexes containing members of the J404 nonapeptide phage-display library formed in diluted antiserum and isolated on a protein A affinity matrix. Immunoreactive clones were grown as plaques, replica plated onto nitrocellulose, and labeled with anti-actin immune serum. One hundred and forty-four positively staining clones identified in this way were sequenced. Of these, 54 displayed peptides with sequence similarities. When the most abundantly selected sequence, KQTWQQLWD, was produced as a synthetic peptide and derivatized to ovalbumin, the complex was strongly recognized by the antiserum on Western blots and inhibited the binding of the antibody to immobilized F-actin by 60%. A scrambled version of this sequence WQDKWLQTQ, when coupled to ovalbumin, was not recognized by the antiserum and minimally inhibited binding of antiserum to immobilized F-actin by 10%. KQTWQQLWD contained four residues that corresponded, in frame, to a highly conserved six residue region of the chicken β-actin sequence 351TFQQMW356 (identical residues are shown in bold). Examination of the rabbit skeletal muscle X-ray crystal structure suggested that within a 15 Å radius of W356, nine additional residues were arranged on the actin surface in such a way that they could be mimicked by several of the selected phage sequences with root-mean-square deviation fits of 2.1–2.5 Å. We conclude that phage-display analysis can provide information about the relative location of amino acids on the surfaces of proteins using antibody imprints of the protein surface structure.

Type
Research Article
Copyright
© 1999 The Protein Society

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