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Understanding the sequence determinants of conformational switching using protein design

Published online by Cambridge University Press:  05 October 2000

SEEMA DALAL
Affiliation:
Department of Chemistry, Yale University, 266 Whitney Avenue, Bass 322, New Haven, Connecticut 06520 Current address: Department of Cell Biology and Physiology, Washington University School of Medicine, St. Louis, Missouri 63110.
LYNNE REGAN
Affiliation:
Department of Chemistry, Yale University, 266 Whitney Avenue, Bass 322, New Haven, Connecticut 06520 Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, Bass 322, New Haven, Connecticut 06520
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Abstract

An important goal of protein design is to understand the forces that stabilize a particular fold in preference to alternative folds. Here, we describe an extension of earlier studies in which we successfully designed a stable, native-like helical protein that is 50% identical in sequence to a predominantly β-sheet protein, the B1 domain of Streptococcal IgG-binding protein G. We report the characteristics of a series of variants of our original design that have even higher sequence identity to the B1 domain. Their properties illustrate the extent to which protein stability and conformation can be modulated through careful manipulation of key amino acid residues. Our results have implications for understanding conformational change phenomena of central biological importance and in probing the malleability of the sequence/structure relationship.

Type
Research Article
Copyright
2000 The Protein Society

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